Experiment set29IT065 for Pseudomonas putida KT2440

Compare to:

Rhamnogalacturonan - from potato carbon source

200 most important genes:

  gene name fitness t score description  
PP_0082 -3.4 -4.7 tryptophan synthase alpha chain compare
PP_3726 -3.1 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_4799 -2.7 -4.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4364 -2.6 -4.9 putative Anti-sigma F factor antagonist compare
PP_0164 -2.6 -9.8 conserved protein of unknown function compare
PP_2999 -2.5 -1.7 Glyoxalase family protein compare
PP_4938 -2.1 -7.3 putative Glycosyl transferase compare
PP_0292 -2.1 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3532 -2.1 -1.7 Transcriptional regulator, AsnC family compare
PP_5232 -2.1 -1.7 conserved protein of unknown function compare
PP_5313 -2.1 -2.8 DNA-binding protein HU-alpha compare
PP_3599 -2.1 -8.3 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PP_2370 -2.1 -5.1 conserved protein of unknown function compare
PP_0957 -2.0 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4734 -2.0 -6.4 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0420 -2.0 -8.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3505 -2.0 -2.0 conserved protein of unknown function compare
PP_1493 -2.0 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0184 -1.9 -6.1 Argininosuccinate lyase compare
PP_4999 -1.9 -2.1 dihydroorotase-like protein compare
PP_3840 -1.9 -1.3 conserved protein of unknown function compare
PP_1995 -1.9 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1169 -1.9 -5.3 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) compare
PP_4695 -1.9 -8.5 Sensory box histidine kinase compare
PP_5097 -1.9 -10.1 homoserine O-acetyltransferase compare
PP_1697 -1.8 -2.5 transcriptional regulator, GntR family compare
PP_1985 -1.8 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_2575 -1.8 -2.0 conserved exported protein of unknown function compare
PP_1293 -1.8 -1.1 molybdopterin synthase small subunit compare
PP_4696 -1.8 -5.0 Nitrogen regulation protein NR(I) compare
PP_4961 -1.8 -2.0 putative Lipoprotein compare
PP_3601 -1.8 -7.6 galactarate dehydratase compare
PP_1079 -1.7 -4.3 Ornithine carbamoyltransferase compare
PP_3999 -1.7 -7.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1168 -1.7 -6.2 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_0421 -1.7 -6.2 Anthranilate phosphoribosyltransferase compare
PP_0417 -1.7 -11.4 Anthranilate synthase component 1 compare
PP_4789 -1.7 -3.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5014 -1.7 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0966 -1.7 -6.6 Histidinol dehydrogenase compare
PP_0083 -1.7 -5.4 tryptophan synthase beta chain compare
PP_1088 -1.7 -8.4 Argininosuccinate synthase compare
PP_3600 -1.7 -9.6 glucarate transporter compare
PP_1171 -1.7 -7.3 Uronate dehydrogenase (EC 1.1.1.203) (from data) conserved
PP_0289 -1.7 -4.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -1.6 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0834 -1.6 -2.6 Sec translocation complex subunit YajC compare
PP_5185 -1.6 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0852 -1.6 -2.8 Transcriptional regulator, Cro/CI family compare
PP_0290 -1.6 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1170 -1.6 -4.7 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_4797 -1.6 -2.0 conserved protein of unknown function compare
PP_2328 -1.6 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_5015 -1.6 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -1.5 -7.1 2-isopropylmalate synthase compare
PP_5128 -1.5 -5.5 Dihydroxy-acid dehydratase compare
PP_t10 -1.5 -2.0 tRNA-Pro compare
PP_1167 -1.5 -5.5 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_5471 -1.5 -1.5 putative response regulator receiver protein compare
PP_2001 -1.5 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_1165 -1.5 -8.9 conserved protein of unknown function compare
PP_1544 -1.5 -2.7 conserved protein of unknown function compare
PP_4891 -1.5 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4723 -1.5 -11.2 Carbamoyl-phosphate synthase large chain compare
PP_5098 -1.5 -5.8 methionine biosynthesis protein MetW compare
PP_0833 -1.4 -2.9 queuine tRNA-ribosyltransferase compare
PP_1988 -1.4 -5.8 3-isopropylmalate dehydrogenase compare
PP_4678 -1.4 -9.0 Ketol-acid reductoisomerase compare
PP_5225 -1.4 -1.4 frataxin compare
PP_0965 -1.4 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3926 -1.4 -1.3 short-chain dehydrogenase compare
PP_1679 -1.4 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5571 -1.3 -1.6 conserved protein of unknown function compare
PP_4098 -1.3 -1.5 UvrABC system protein C compare
PP_0967 -1.3 -5.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1096 -1.3 -1.2 putative electron transport complex protein compare
PP_0691 -1.3 -3.9 Glutamate 5-kinase compare
PP_3511 -1.3 -6.7 Branched-chain-amino-acid aminotransferase compare
PP_1366 -1.3 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_0914 -1.2 -7.0 GGDEF domain protein compare
PP_4680 -1.2 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4356 -1.2 -2.2 Flagellar protein FliO compare
PP_5289 -1.2 -2.3 Acetylglutamate kinase compare
PP_4124 -1.2 -0.8 NADH-quinone oxidoreductase subunit G compare
PP_1729 -1.2 -0.9 conserved protein of unknown function compare
PP_4561 -1.2 -1.0 stress response protein compare
PP_1654 -1.2 -2.4 cysteine synthase B compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_5453 -1.2 -1.7 conserved protein of unknown function compare
PP_2581 -1.2 -1.3 conserved protein of unknown function compare
PP_2499 -1.2 -0.9 conserved protein of unknown function compare
PP_1097 -1.2 -1.8 Methionine--tRNA ligase compare
PP_4370 -1.2 -3.1 Flagellar hook-basal body complex protein FliE compare
PP_0293 -1.1 -1.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3013 -1.1 -4.1 conserved protein of unknown function compare
PP_0848 -1.1 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1672 -1.1 -3.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4355 -1.1 -2.6 flagellar export apparatus subunit compare
PP_2371 -1.1 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3637 -1.1 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4909 -1.1 -4.4 phosphoserine phosphatase compare
PP_2327 -1.1 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1876 -1.1 -1.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1233 -1.1 -2.5 sulfurtransferase compare
PP_3484 -1.1 -2.8 Response regulator receiver protein compare
PP_4895 -1.1 -2.4 tRNA dimethylallyltransferase compare
PP_4470 -1.1 -2.7 putative transcriptional regulator (Arc domain-containing) compare
PP_2899 -1.0 -1.1 conserved exported protein of unknown function compare
PP_4679 -1.0 -3.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0593 -1.0 -1.0 putative ribosome-binding factor compare
PP_0513 -1.0 -2.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3730 -1.0 -2.0 Transcriptional regulatory protein AruR compare
PP_5393 -1.0 -0.8 putative metal-binding chaperone compare
PP_0339 -1.0 -4.5 Pyruvate dehydrogenase E1 component compare
PP_0556 -1.0 -2.8 Acetoin catabolism protein compare
PP_0195 -1.0 -1.7 conserved protein of unknown function compare
PP_3312 -1.0 -0.8 putative Heat shock protein compare
PP_4227 -1.0 -1.3 conserved protein of unknown function compare
PP_0220 -1.0 -3.4 methionine import ATP-binding protein metN2 compare
PP_3773 -1.0 -1.4 conserved protein of unknown function compare
PP_1733 -1.0 -0.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1824 -1.0 -1.1 Smr domain protein compare
PP_4481 -1.0 -4.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4964 -0.9 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5279 -0.9 -2.2 conserved protein of unknown function compare
PP_1082 -0.9 -3.8 bacterioferritin compare
PP_5114 -0.9 -0.9 putative adenine methyltransferase compare
PP_1678 -0.9 -3.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_5448 -0.9 -1.5 conserved protein of unknown function compare
PP_t29 -0.9 -1.7 tRNA-Ala compare
PP_4358 -0.9 -3.3 flagellar synthesis, switching and energizing component compare
PP_0368 -0.9 -4.7 putative Acyl-CoA dehydrogenase compare
PP_2145 -0.9 -4.5 beta-N-acetylglucosaminidase compare
PP_5322 -0.9 -3.5 putative metal ion transporter compare
PP_1142 -0.9 -0.6 conserved protein of unknown function compare
PP_2414 -0.9 -1.2 conserved exported protein of unknown function compare
PP_0434 -0.9 -6.6 Anhydro-N-acetylmuramic acid kinase compare
PP_0435 -0.9 -7.0 Peptidase, M23/M37 family compare
PP_2000 -0.9 -1.0 amidophosphoribosyl transferase compare
PP_2322 -0.9 -4.1 Major outer membrane lipoprotein compare
PP_4368 -0.9 -3.7 flagellar motor switch protein compare
PP_4369 -0.8 -4.3 Flagellar M-ring protein compare
PP_5640 -0.8 -1.9 conserved protein of unknown function compare
PP_2127 -0.8 -2.3 Sensor histidine kinase compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_4832 -0.8 -3.5 Precorrin-6x reductase compare
PP_5216 -0.8 -2.0 exopolyphosphatase compare
PP_2088 -0.8 -2.1 RNA polymerase sigma factor SigX compare
PP_3081 -0.8 -2.6 conserved protein of unknown function compare
PP_2121 -0.8 -2.1 putative Lipoprotein compare
PP_1362 -0.8 -2.0 pyruvate kinase II compare
PP_4892 -0.8 -3.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0307 -0.8 -1.8 conserved exported protein of unknown function compare
PP_4982 -0.8 -2.1 putative cytochrome b561, iron-regulated compare
PP_2442 -0.8 -1.3 conserved protein of unknown function, DUF480 family compare
PP_3821 -0.8 -4.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2375 -0.8 -5.3 cobalamin-dependent methionine synthase compare
PP_4133 -0.8 -1.9 Transcriptional regulator-related protein compare
PP_5472 -0.8 -2.9 conserved exported protein of unknown function compare
PP_4419 -0.8 -0.7 transposase compare
PP_4363 -0.8 -4.4 Sensor histidine kinase/response regulator compare
PP_1176 -0.8 -1.8 conserved protein of unknown function compare
PP_0340 -0.8 -5.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2324 -0.8 -3.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4837 -0.8 -1.9 conserved protein of unknown function compare
PP_5121 -0.8 -1.8 conserved exported protein of unknown function compare
PP_2668 -0.8 -1.9 ABC efflux transporter, ATP-binding protein compare
PP_5146 -0.8 -4.1 RNA pyrophosphohydrolase compare
PP_0265 -0.8 -3.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
PP_1941 -0.8 -3.0 conserved protein of unknown function compare
PP_2337 -0.8 -1.1 aconitate isomerase compare
PP_2320 -0.8 -4.9 conserved exported protein of unknown function compare
PP_0422 -0.8 -1.8 Indole-3-glycerol phosphate synthase compare
PP_1862 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_1764 -0.8 -2.9 Phosphoglycolate phosphatase 2 compare
PP_5644 -0.8 -1.5 conserved membrane protein of unknown function compare
PP_1501 -0.8 -2.9 conserved protein of unknown function compare
PP_2847 -0.8 -1.1 Urease accessory protein UreJ compare
PP_2580 -0.8 -1.3 conserved protein of unknown function compare
PP_4981 -0.8 -1.3 polyisoprene-binding protein, acidic stress response factor compare
PP_5109 -0.8 -3.0 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_5203 -0.8 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_0405 -0.8 -5.8 conserved protein of unknown function compare
PP_4977 -0.8 -4.0 5,10-methylenetetrahydrofolate reductase compare
PP_5176 -0.8 -1.5 conserved protein of unknown function compare
PP_4989 -0.8 -1.8 Protein PilJ compare
PP_2044 -0.8 -0.9 conserved inner membrane protein of unknown function compare
PP_5110 -0.7 -1.1 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4344 -0.7 -4.9 flagellar export pore protein compare
PP_3235 -0.7 -3.2 conserved protein of unknown function compare
PP_4362 -0.7 -1.3 conserved protein of unknown function compare
PP_1673 -0.7 -2.6 cobyrinate a,c-diamide synthase compare
PP_3102 -0.7 -2.3 conserved protein of unknown function compare
PP_4724 -0.7 -3.6 Carbamoyl-phosphate synthase small chain compare
PP_1355 -0.7 -5.5 Muropeptide permease AmpG compare
PP_0319 -0.7 -0.6 conserved protein of unknown function compare
PP_5076 -0.7 -5.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1045 -0.7 -0.6 Type II secretion pathway protein XcpP compare
PP_4120 -0.7 -1.5 NADH-quinone oxidoreductase subunit B compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Rhamnogalacturonan - from potato in Pseudomonas putida KT2440

For carbon source Rhamnogalacturonan - from potato across organisms