Experiment set29IT063 for Pseudomonas putida KT2440

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Mucic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -7.0 -21.0 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.6 -10.9 Carbamoyl-phosphate synthase small chain compare
PP_4890 -6.0 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -6.0 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_4678 -6.0 -9.2 Ketol-acid reductoisomerase compare
PP_3511 -5.9 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_0966 -5.9 -8.1 Histidinol dehydrogenase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -5.8 -6.9 methionine biosynthesis protein MetW compare
PP_1988 -5.8 -8.9 3-isopropylmalate dehydrogenase compare
PP_5015 -5.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5076 -5.7 -14.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_0967 -5.6 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -5.6 -5.5 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.5 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2001 -5.5 -12.7 O-succinylhomoserine sulfhydrylase compare
PP_0290 -5.5 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5075 -5.4 -10.4 glutamate synthase (NADPH) beta subunit compare
PP_3599 -5.3 -8.9 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PP_1109 -5.3 -15.0 Transcriptional regulator, GntR family compare
PP_5095 -5.3 -3.7 pyrroline-5-carboxylate reductase compare
PP_4679 -5.3 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -5.2 -17.0 Anthranilate synthase component 1 compare
PP_1088 -5.2 -11.5 Argininosuccinate synthase compare
PP_4909 -5.1 -7.0 phosphoserine phosphatase compare
PP_3601 -5.1 -8.5 galactarate dehydratase compare
PP_1079 -5.0 -3.5 Ornithine carbamoyltransferase compare
PP_0420 -5.0 -11.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -5.0 -12.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -4.9 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -4.8 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1231 -4.8 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -4.8 -4.6 Acetylglutamate kinase compare
PP_4999 -4.7 -3.3 dihydroorotase-like protein compare
PP_2327 -4.7 -9.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5097 -4.6 -14.5 homoserine O-acetyltransferase compare
PP_2370 -4.6 -5.5 conserved protein of unknown function compare
PP_5128 -4.5 -8.5 Dihydroxy-acid dehydratase compare
PP_5508 -4.5 -2.1 conserved protein of unknown function compare
PP_0691 -4.4 -6.5 Glutamate 5-kinase compare
PP_3600 -4.4 -15.6 glucarate transporter compare
PP_0292 -4.4 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0421 -4.4 -8.3 Anthranilate phosphoribosyltransferase compare
PP_0184 -4.3 -7.2 Argininosuccinate lyase compare
PP_5155 -4.2 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_0289 -4.1 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1986 -4.1 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_1110 -4.1 -6.7 serine acetyltransferase compare
PP_1025 -4.1 -13.6 2-isopropylmalate synthase compare
PP_0339 -4.0 -5.5 Pyruvate dehydrogenase E1 component compare
PP_5322 -4.0 -8.5 putative metal ion transporter compare
PP_0787 -4.0 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0901 -4.0 -8.3 DNA-binding response regulator compare
PP_2371 -3.9 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1233 -3.9 -4.6 sulfurtransferase compare
PP_0083 -3.8 -3.7 tryptophan synthase beta chain compare
PP_1111 -3.7 -6.1 putative Synthetase compare
PP_3999 -3.6 -4.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0902 -3.5 -11.3 integral membrane sensor signal transduction histidine kinase compare
PP_5104 -3.3 -7.5 thiazole synthase compare
PP_4696 -3.3 -3.2 Nitrogen regulation protein NR(I) compare
PP_4799 -3.2 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2388 -3.2 -4.9 Transporter, LysE family compare
PP_5303 -3.1 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1054 -3.0 -2.5 Type II secretion pathway protein XcpZ compare
PP_2328 -2.9 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_4813 -2.9 -7.8 PAP2 family protein/DedA family protein compare
PP_4700 -2.9 -5.5 pantothenate synthetase compare
PP_0063 -2.7 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1912 -2.5 -5.9 Phosphate acyltransferase compare
PP_4782 -2.5 -5.0 Phosphomethylpyrimidine kinase compare
PP_4922 -2.4 -11.9 Phosphomethylpyrimidine synthase compare
PP_4789 -2.3 -5.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4874 -2.3 -1.5 50S ribosomal protein L9 compare
PP_0735 -2.2 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_1348 -2.1 -6.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2390 -2.1 -7.9 Transcriptional regulator, LysR family compare
PP_2740 -2.1 -1.8 Transcriptional regulator, MerR family compare
PP_4480 -2.1 -8.7 arginine N-succinyltransferase, subunit alpha compare
PP_4268 -2.0 -1.9 nucleoid-associated broad specificity regulator compare
PP_0291 -2.0 -3.1 conserved protein of unknown function compare
PP_3590 -1.9 -7.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2088 -1.9 -4.0 RNA polymerase sigma factor SigX compare
PP_3052 -1.8 -1.5 conserved protein of unknown function compare
PP_4695 -1.8 -8.0 Sensory box histidine kinase compare
PP_5295 -1.7 -1.8 conserved protein of unknown function compare
PP_0435 -1.6 -12.1 Peptidase, M23/M37 family compare
PP_5085 -1.6 -6.7 malic enzyme B compare
PP_4120 -1.5 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_4130 -1.5 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2168 -1.5 -7.7 Transaldolase compare
PP_4824 -1.5 -3.5 Sensor histidine kinase/response regulator compare
PP_2581 -1.4 -1.4 conserved protein of unknown function compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1186 -1.4 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_0612 -1.4 -6.6 FAD-dependent glycine/D-amino acid oxidase compare
PP_1224 -1.4 -5.0 periplasmic subunit of the TolQRA transport system compare
PP_4122 -1.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4481 -1.3 -5.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1426 -1.3 -8.7 L-aspartate oxidase compare
PP_3602 -1.3 -6.9 2,5-dioxovalerate dehydrogenase compare
PP_1112 -1.2 -6.6 conserved membrane protein of unknown function compare
PP_0653 -1.2 -1.4 conserved protein of unknown function compare
PP_2337 -1.2 -1.9 aconitate isomerase compare
PP_0852 -1.2 -2.0 Transcriptional regulator, Cro/CI family compare
PP_5048 -1.2 -4.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0362 -1.2 -7.2 Biotin synthase compare
PP_2402 -1.2 -2.2 putative Sensor histidine kinase compare
PP_2000 -1.1 -1.1 amidophosphoribosyl transferase compare
PP_0065 -1.1 -2.9 NAD-binding component of TrK potassium transporter compare
PP_4271 -1.1 -0.7 conserved protein of unknown function compare
PP_4131 -1.1 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_5331 -1.1 -3.6 Long-chain acyl-CoA thioester hydrolase compare
PP_0195 -1.1 -1.8 conserved protein of unknown function compare
PP_1304 -1.1 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4004 -1.1 -2.0 DNA translocase FtsK compare
PP_3245 -1.1 -1.5 conserved protein of unknown function compare
PP_3244 -1.1 -3.3 Magnesium transporter, MgtC family compare
PP_3098 -1.0 -1.1 conserved protein of unknown function compare
PP_5055 -1.0 -2.9 Sulfurtransferase compare
PP_4964 -1.0 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1303 -1.0 -4.9 Sulfate adenylyltransferase subunit 2 compare
PP_4902 -1.0 -1.3 Oligoribonuclease compare
PP_4993 -1.0 -2.7 Glutathione synthetase compare
PP_2378 -1.0 -1.6 Fe/S biogenesis protein NfuA compare
PP_1679 -1.0 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1681 -1.0 -6.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4478 -1.0 -4.9 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_2280 -1.0 -1.5 conserved protein of unknown function compare
PP_4124 -1.0 -1.3 NADH-quinone oxidoreductase subunit G compare
PP_4379 -1.0 -4.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1468 -0.9 -1.1 Tyrosine recombinase XerD compare
PP_1344 -0.9 -1.9 conserved protein of unknown function compare
PP_4094 -0.9 -2.0 conserved protein of unknown function compare
PP_1322 -0.9 -1.4 putative Lipoprotein compare
PP_0685 -0.9 -2.4 conserved protein of unknown function compare
PP_0401 -0.9 -1.7 Ribosomal RNA small subunit methyltransferase A compare
PP_0273 -0.9 -2.1 conserved protein of unknown function compare
PP_5035 -0.9 -3.9 Histidine utilization repressor compare
PP_4830 -0.9 -3.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_5654 -0.9 -1.4 putative phosphotriesterase compare
PP_4253 -0.9 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_5227 -0.9 -4.4 diaminopimelate decarboxylase compare
PP_4262 -0.9 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0425 -0.9 -1.8 conserved protein of unknown function compare
PP_1355 -0.9 -7.8 Muropeptide permease AmpG compare
PP_3243 -0.9 -2.2 Acetyltransferase, GNAT family compare
PP_5328 -0.9 -2.5 putative phosphate transport system permease protein compare
PP_4126 -0.9 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_2389 -0.9 -1.8 conserved protein of unknown function compare
PP_4699 -0.9 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3081 -0.9 -2.5 conserved protein of unknown function compare
PP_1265 -0.8 -2.0 conserved protein of unknown function compare
PP_0738 -0.8 -1.5 conserved protein of unknown function compare
PP_5350 -0.8 -2.8 Transcriptional regulator, RpiR family compare
PP_0593 -0.8 -1.0 putative ribosome-binding factor compare
PP_5748 -0.8 -1.3 cytochrome c heme lyase subunit compare
PP_4826 -0.8 -3.8 Precorrin-3B C17-methyltransferase compare
PP_3506 -0.8 -1.8 Magnesium chelatase, subunit ChII compare
PP_5571 -0.8 -1.3 conserved protein of unknown function compare
PP_0188 -0.8 -3.1 putative Uroporphyrin-III C-methyltransferase compare
PP_1664 -0.8 -2.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4493 -0.8 -6.0 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_5090 -0.8 -1.4 putative cell division protein compare
PP_0913 -0.8 -4.1 conserved exported protein of unknown function compare
PP_2883 -0.8 -1.3 conserved protein of unknown function compare
PP_4387 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0789 -0.8 -3.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0393 -0.8 -0.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1673 -0.8 -4.0 cobyrinate a,c-diamide synthase compare
PP_4895 -0.8 -1.7 tRNA dimethylallyltransferase compare
PP_5352 -0.8 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2217 -0.7 -1.6 enoyl-CoA hydratase compare
PP_4917 -0.7 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2087 -0.7 -1.9 CmpX protein compare
PP_4487 -0.7 -6.3 acetyl-CoA synthetase compare
PP_1021 -0.7 -3.2 DNA-binding transcriptional regulator compare
PP_2060 -0.7 -1.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2070 -0.7 -1.4 Transcriptional regulator, AraC family compare
PP_0319 -0.7 -1.2 conserved protein of unknown function compare
PP_0303 -0.7 -2.4 dehydrocarnitine cleavage enzyme compare
PP_1764 -0.7 -4.1 Phosphoglycolate phosphatase 2 compare
PP_4633 -0.7 -2.6 conserved protein of unknown function, DUF1244 family compare
PP_1237 -0.7 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5453 -0.7 -1.1 conserved protein of unknown function compare
PP_0406 -0.7 -2.9 Nucleotidyltransferase family protein compare
PP_3192 -0.7 -1.9 conserved protein of unknown function compare
PP_1048 -0.7 -1.5 putative protein secretion protein for export compare
PP_1672 -0.7 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1826 -0.7 -1.4 Hydrolase, isochorismatase family compare
PP_2677 -0.7 -2.1 conserved exported protein of unknown function compare
PP_2336 -0.7 -1.4 aconitate hydratase 1 compare
PP_1216 -0.7 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1008 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PP_1778 -0.7 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_5028 -0.7 -1.6 proline iminopeptidase compare
PP_0938 -0.7 -3.9 conserved protein of unknown function compare
PP_0356 -0.7 -3.3 malate synthase G compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Mucic acid in Pseudomonas putida KT2440

For carbon source Mucic acid across organisms