Experiment set29IT062 for Pseudomonas putida KT2440

Compare to:

D-Glucuronic acid gamma lactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_4757 -6.2 -6.1 D-glucarate dehydratase / L-idarate epimerase compare
PP_0290 -6.1 -4.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1171 -6.0 -10.8 Uronate dehydrogenase (EC 1.1.1.203) (from data) compare
PP_0293 -6.0 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4759 -5.9 -5.7 transcriptional regulator, GntR family compare
PP_3599 -5.8 -7.9 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PP_0417 -5.5 -16.0 Anthranilate synthase component 1 compare
PP_5289 -5.5 -3.8 Acetylglutamate kinase compare
PP_1169 -5.4 -9.0 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) compare
PP_3511 -5.4 -9.7 Branched-chain-amino-acid aminotransferase compare
PP_1088 -5.3 -10.9 Argininosuccinate synthase compare
PP_1988 -5.3 -11.4 3-isopropylmalate dehydrogenase compare
PP_4758 -5.3 -10.8 Major facilitator family transporter compare
PP_1167 -5.2 -7.3 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_4890 -5.2 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -5.2 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4678 -5.2 -16.2 Ketol-acid reductoisomerase compare
PP_4723 -5.2 -18.7 Carbamoyl-phosphate synthase large chain compare
PP_1985 -5.1 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_4680 -5.1 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.1 -11.4 Histidinol dehydrogenase compare
PP_1995 -5.0 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -5.0 -11.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -4.9 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -4.9 -5.8 Indole-3-glycerol phosphate synthase compare
PP_0184 -4.9 -5.8 Argininosuccinate lyase compare
PP_2001 -4.8 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_5322 -4.8 -5.7 putative metal ion transporter compare
PP_4909 -4.8 -8.6 phosphoserine phosphatase compare
PP_0967 -4.8 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1168 -4.7 -7.2 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_5015 -4.6 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -4.6 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5097 -4.6 -14.6 homoserine O-acetyltransferase compare
PP_1170 -4.5 -8.4 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_4724 -4.4 -9.5 Carbamoyl-phosphate synthase small chain compare
PP_0965 -4.4 -11.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -4.3 -10.4 methionine biosynthesis protein MetW compare
PP_0289 -4.3 -9.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2327 -4.3 -10.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -4.1 -7.3 Glutamate 5-kinase compare
PP_5128 -4.1 -7.7 Dihydroxy-acid dehydratase compare
PP_1826 -4.1 -2.8 Hydrolase, isochorismatase family compare
PP_0083 -4.1 -2.8 tryptophan synthase beta chain compare
PP_1025 -4.0 -12.4 2-isopropylmalate synthase compare
PP_2370 -4.0 -4.2 conserved protein of unknown function compare
PP_1231 -3.9 -8.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4789 -3.9 -5.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0082 -3.9 -4.6 tryptophan synthase alpha chain compare
PP_1986 -3.8 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1079 -3.8 -5.2 Ornithine carbamoyltransferase compare
PP_0421 -3.7 -7.6 Anthranilate phosphoribosyltransferase compare
PP_4364 -3.7 -5.6 putative Anti-sigma F factor antagonist compare
PP_5014 -3.7 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_3999 -3.6 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5155 -3.4 -7.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -3.4 -3.8 dihydroorotase-like protein compare
PP_4696 -3.4 -4.0 Nitrogen regulation protein NR(I) compare
PP_2388 -3.3 -3.7 Transporter, LysE family compare
PP_0735 -3.2 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0435 -3.2 -21.2 Peptidase, M23/M37 family compare
PP_2371 -3.2 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0339 -3.1 -7.6 Pyruvate dehydrogenase E1 component compare
PP_2328 -3.1 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_0787 -3.0 -4.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4695 -3.0 -12.4 Sensory box histidine kinase compare
PP_2499 -3.0 -1.7 conserved protein of unknown function compare
PP_5104 -2.8 -8.2 thiazole synthase compare
PP_2168 -2.7 -10.8 Transaldolase compare
PP_0834 -2.7 -2.2 Sec translocation complex subunit YajC compare
PP_1233 -2.6 -4.9 sulfurtransferase compare
PP_0291 -2.6 -4.6 conserved protein of unknown function compare
PP_4782 -2.6 -4.1 Phosphomethylpyrimidine kinase compare
PP_5303 -2.6 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0368 -2.6 -11.5 putative Acyl-CoA dehydrogenase compare
PP_4892 -2.5 -6.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5095 -2.5 -2.7 pyrroline-5-carboxylate reductase compare
PP_4891 -2.5 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4700 -2.4 -5.1 pantothenate synthetase compare
PP_4938 -2.4 -7.8 putative Glycosyl transferase compare
PP_2132 -2.4 -4.3 Universal stress protein compare
PP_1804 -2.4 -11.8 Glycosyl transferase WbpL compare
PP_2378 -2.3 -2.7 Fe/S biogenesis protein NfuA compare
PP_1780 -2.2 -16.6 putative mannosyltransferase compare
PP_1802 -2.2 -15.1 glycosyl transferase compare
PP_4940 -2.1 -6.9 Putative glycosyltransferase compare
PP_1348 -2.1 -6.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1778 -2.1 -6.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1650 -2.1 -10.1 Sensor protein GacS compare
PP_1776 -2.1 -14.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4922 -2.1 -11.5 Phosphomethylpyrimidine synthase compare
PP_2390 -2.0 -4.8 Transcriptional regulator, LysR family compare
PP_5146 -2.0 -8.4 RNA pyrophosphohydrolase compare
PP_4099 -2.0 -10.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1799 -2.0 -11.9 GDP-mannose 4,6-dehydratase compare
PP_1805 -2.0 -14.1 Polysaccharide biosynthesis protein compare
PP_4936 -1.9 -7.1 O-antigen polymerase compare
PP_3245 -1.9 -1.7 conserved protein of unknown function compare
PP_0406 -1.9 -4.3 Nucleotidyltransferase family protein compare
PP_3821 -1.8 -8.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1048 -1.8 -2.7 putative protein secretion protein for export compare
PP_1779 -1.8 -5.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4004 -1.8 -2.1 DNA translocase FtsK compare
PP_4122 -1.8 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1664 -1.8 -4.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1801 -1.8 -9.3 Glycosyl transferase WbpY compare
PP_1493 -1.7 -3.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1800 -1.7 -9.1 Oxidoreductase Rmd compare
PP_0914 -1.7 -7.8 GGDEF domain protein compare
PP_5652 -1.7 -2.0 conserved protein of unknown function, phage origin compare
PP_2136 -1.7 -4.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4699 -1.7 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2402 -1.7 -2.7 putative Sensor histidine kinase compare
PP_3244 -1.6 -4.4 Magnesium transporter, MgtC family compare
PP_1912 -1.6 -4.4 Phosphate acyltransferase compare
PP_2675 -1.6 -2.7 Cytochrome c-type protein compare
PP_2322 -1.6 -8.8 Major outer membrane lipoprotein compare
PP_5475 -1.6 -1.3 conserved protein of unknown function compare
PP_1224 -1.6 -5.1 periplasmic subunit of the TolQRA transport system compare
PP_3243 -1.6 -2.7 Acetyltransferase, GNAT family compare
PP_4008 -1.6 -5.8 ATP-dependent serine protease compare
PP_0127 -1.6 -4.5 Thiol:disulfide interchange protein compare
PP_0833 -1.5 -3.1 queuine tRNA-ribosyltransferase compare
PP_3409 -1.5 -2.8 putative Cobalamin biosynthesis protein cobE compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0340 -1.5 -8.1 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4130 -1.4 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5114 -1.4 -1.3 putative adenine methyltransferase compare
PP_0852 -1.4 -2.5 Transcriptional regulator, Cro/CI family compare
PP_5055 -1.4 -3.0 Sulfurtransferase compare
PP_4902 -1.4 -1.6 Oligoribonuclease compare
PP_1366 -1.4 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_4120 -1.4 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_5035 -1.4 -3.9 Histidine utilization repressor compare
PP_0949 -1.3 -4.4 putative ATP-binding protein UPF0042 compare
PP_4480 -1.3 -6.1 arginine N-succinyltransferase, subunit alpha compare
PP_0063 -1.3 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0405 -1.3 -10.2 conserved protein of unknown function compare
PP_0356 -1.3 -5.2 malate synthase G compare
PP_5313 -1.3 -2.2 DNA-binding protein HU-alpha compare
PP_4131 -1.3 -4.6 NADH-quinone oxidoreductase subunit N compare
PP_5075 -1.3 -7.9 glutamate synthase (NADPH) beta subunit compare
PP_2324 -1.3 -6.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0593 -1.2 -1.2 putative ribosome-binding factor compare
PP_5279 -1.2 -2.8 conserved protein of unknown function compare
PP_1355 -1.2 -10.1 Muropeptide permease AmpG compare
PP_3098 -1.2 -1.1 conserved protein of unknown function compare
PP_2414 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1309 -1.2 -4.8 conserved exported protein of unknown function compare
PP_4939 -1.2 -3.8 conserved protein of unknown function compare
PP_1165 -1.2 -6.9 conserved protein of unknown function compare
PP_1304 -1.2 -6.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3790 -1.2 -5.3 diaminopimelate epimerase compare
PP_1803 -1.2 -7.7 UDP-sugar epimerase compare
PP_1426 -1.1 -7.4 L-aspartate oxidase compare
PP_2669 -1.1 -5.4 putative Outer membrane protein compare
PP_5528 -1.1 -1.6 conserved protein of unknown function compare
PP_4993 -1.1 -3.0 Glutathione synthetase compare
PP_3398 -1.1 -1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5317 -1.1 -2.8 Probable chorismate pyruvate-lyase compare
PP_1733 -1.1 -0.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5267 -1.1 -1.9 putative cytochrome c5 compare
PP_4917 -1.1 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3539 -1.1 -2.9 putative Transcriptional regulator compare
PP_0434 -1.0 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1994 -1.0 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_4982 -1.0 -3.5 putative cytochrome b561, iron-regulated compare
PP_4126 -1.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_3590 -1.0 -4.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3484 -1.0 -2.8 Response regulator receiver protein compare
PP_4129 -1.0 -1.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5594 -1.0 -1.6 conserved protein of unknown function compare
PP_5145 -1.0 -8.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4342 -1.0 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_3602 -1.0 -5.4 2,5-dioxovalerate dehydrogenase compare
PP_1702 -1.0 -3.0 Recombination-associated protein RdgC compare
PP_0362 -1.0 -6.7 Biotin synthase compare
PP_4470 -1.0 -2.4 putative transcriptional regulator (Arc domain-containing) compare
PP_2320 -1.0 -7.4 conserved exported protein of unknown function compare
PP_5327 -1.0 -5.5 putative phosphate ABC transporter, permease subunit compare
PP_2145 -1.0 -4.8 beta-N-acetylglucosaminidase compare
PP_2323 -1.0 -5.4 conserved protein of unknown function compare
PP_1876 -1.0 -2.7 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0376 -1.0 -4.7 Coenzyme PQQ synthesis protein E compare
PP_5329 -1.0 -4.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3105 -1.0 -1.7 conserved membrane protein of unknown function compare
PP_4124 -1.0 -1.3 NADH-quinone oxidoreductase subunit G compare
PP_5227 -1.0 -5.1 diaminopimelate decarboxylase compare
PP_5508 -1.0 -0.9 conserved protein of unknown function compare
PP_1293 -1.0 -0.9 molybdopterin synthase small subunit compare
PP_3824 -1.0 -2.3 conserved exported protein of unknown function compare
PP_5028 -0.9 -2.1 proline iminopeptidase compare
PP_2883 -0.9 -1.6 conserved protein of unknown function compare
PP_0378 -0.9 -5.3 Pyrroloquinoline-quinone synthase compare
PP_4895 -0.9 -2.4 tRNA dimethylallyltransferase compare
PP_3919 -0.9 -2.0 conserved protein of unknown function compare
PP_3346 -0.9 -1.2 Nickel transporter ATP-binding protein compare
PP_4009 -0.9 -3.5 ATP-dependent Clp protease adapter protein ClpS compare
PP_2868 -0.9 -5.1 Transcriptional regulator, Cro/CI family compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Glucuronic acid gamma lactone in Pseudomonas putida KT2440

For carbon source D-Glucuronic acid gamma lactone across organisms