Experiment set29IT061 for Pseudomonas putida KT2440

Compare to:

D-Glucuronic acid gamma lactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_4758 -6.1 -5.9 Major facilitator family transporter compare
PP_1169 -6.0 -7.1 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) compare
PP_0293 -5.8 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -5.6 -8.6 Histidinol dehydrogenase compare
PP_1171 -5.6 -11.3 Uronate dehydrogenase (EC 1.1.1.203) (from data) compare
PP_3599 -5.5 -8.5 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PP_1167 -5.5 -7.6 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_1988 -5.5 -10.5 3-isopropylmalate dehydrogenase compare
PP_0417 -5.5 -16.2 Anthranilate synthase component 1 compare
PP_1995 -5.4 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5095 -5.3 -3.7 pyrroline-5-carboxylate reductase compare
PP_4757 -5.3 -8.2 D-glucarate dehydratase / L-idarate epimerase compare
PP_4890 -5.3 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -5.3 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -5.3 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -5.2 -12.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -5.2 -11.7 Argininosuccinate synthase compare
PP_3511 -5.2 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.1 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_0965 -5.1 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -5.1 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -5.1 -3.5 Ornithine carbamoyltransferase compare
PP_4678 -5.0 -14.5 Ketol-acid reductoisomerase compare
PP_5097 -5.0 -13.7 homoserine O-acetyltransferase compare
PP_0184 -4.9 -4.8 Argininosuccinate lyase compare
PP_4909 -4.9 -7.5 phosphoserine phosphatase compare
PP_1170 -4.9 -8.1 D-glucaro-1,5-lactonase UxuL (from data) compare
PP_0339 -4.8 -4.7 Pyruvate dehydrogenase E1 component compare
PP_1168 -4.8 -6.6 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) compare
PP_5185 -4.8 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1231 -4.8 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2370 -4.8 -5.7 conserved protein of unknown function compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5322 -4.8 -5.7 putative metal ion transporter compare
PP_1986 -4.7 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0422 -4.7 -5.6 Indole-3-glycerol phosphate synthase compare
PP_5289 -4.7 -4.6 Acetylglutamate kinase compare
PP_4723 -4.7 -18.3 Carbamoyl-phosphate synthase large chain compare
PP_2001 -4.5 -14.3 O-succinylhomoserine sulfhydrylase compare
PP_0289 -4.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.5 -8.1 Glutamate 5-kinase compare
PP_4759 -4.4 -8.5 transcriptional regulator, GntR family compare
PP_4724 -4.4 -9.2 Carbamoyl-phosphate synthase small chain compare
PP_0420 -4.2 -12.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -4.2 -8.4 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.1 -9.9 methionine biosynthesis protein MetW compare
PP_0082 -4.0 -3.9 tryptophan synthase alpha chain compare
PP_1826 -4.0 -2.7 Hydrolase, isochorismatase family compare
PP_1025 -4.0 -12.6 2-isopropylmalate synthase compare
PP_2371 -4.0 -5.4 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -3.9 -7.2 Dihydroxy-acid dehydratase compare
PP_5155 -3.8 -7.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4679 -3.8 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -3.8 -10.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -3.8 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -3.7 -4.4 tryptophan synthase beta chain compare
PP_4789 -3.6 -5.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3999 -3.5 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5104 -3.4 -9.3 thiazole synthase compare
PP_4700 -3.4 -5.6 pantothenate synthetase compare
PP_2136 -3.3 -4.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0368 -3.2 -13.4 putative Acyl-CoA dehydrogenase compare
PP_4782 -3.1 -5.3 Phosphomethylpyrimidine kinase compare
PP_1233 -3.1 -5.1 sulfurtransferase compare
PP_4695 -3.1 -12.3 Sensory box histidine kinase compare
PP_4943 -3.0 -2.1 putative Glycosyl transferase compare
PP_0435 -3.0 -20.0 Peptidase, M23/M37 family compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_4696 -2.9 -4.4 Nitrogen regulation protein NR(I) compare
PP_2168 -2.9 -10.2 Transaldolase compare
PP_4940 -2.8 -7.3 Putative glycosyltransferase compare
PP_4364 -2.7 -4.5 putative Anti-sigma F factor antagonist compare
PP_0834 -2.6 -3.0 Sec translocation complex subunit YajC compare
PP_3821 -2.6 -11.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2388 -2.5 -4.3 Transporter, LysE family compare
PP_0787 -2.5 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3484 -2.5 -6.3 Response regulator receiver protein compare
PP_0833 -2.4 -3.7 queuine tRNA-ribosyltransferase compare
PP_2390 -2.4 -6.3 Transcriptional regulator, LysR family compare
PP_4891 -2.4 -3.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0291 -2.4 -3.2 conserved protein of unknown function compare
PP_4874 -2.4 -1.6 50S ribosomal protein L9 compare
PP_1776 -2.3 -15.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4936 -2.2 -7.2 O-antigen polymerase compare
PP_2328 -2.2 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -2.2 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1801 -2.2 -11.5 Glycosyl transferase WbpY compare
PP_4938 -2.2 -7.4 putative Glycosyl transferase compare
PP_1664 -2.2 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1805 -2.1 -14.6 Polysaccharide biosynthesis protein compare
PP_1804 -2.1 -12.0 Glycosyl transferase WbpL compare
PP_1802 -2.1 -14.2 glycosyl transferase compare
PP_1780 -2.1 -15.8 putative mannosyltransferase compare
PP_1799 -2.1 -12.0 GDP-mannose 4,6-dehydratase compare
PP_0127 -2.1 -6.9 Thiol:disulfide interchange protein compare
PP_0063 -2.0 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2132 -2.0 -3.8 Universal stress protein compare
PP_0406 -1.9 -4.5 Nucleotidyltransferase family protein compare
PP_0356 -1.9 -6.2 malate synthase G compare
PP_1779 -1.8 -5.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5748 -1.8 -2.1 cytochrome c heme lyase subunit compare
PP_4922 -1.8 -8.0 Phosphomethylpyrimidine synthase compare
PP_1800 -1.8 -8.2 Oxidoreductase Rmd compare
PP_4099 -1.8 -10.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0914 -1.8 -8.0 GGDEF domain protein compare
PP_1650 -1.7 -9.1 Sensor protein GacS compare
PP_5279 -1.7 -2.4 conserved protein of unknown function compare
PP_1493 -1.7 -5.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5146 -1.7 -7.9 RNA pyrophosphohydrolase compare
PP_4699 -1.7 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5303 -1.7 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4008 -1.7 -5.8 ATP-dependent serine protease compare
PP_3946 -1.7 -1.7 HTH-type transcriptional repressor NicR compare
PP_4120 -1.7 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_1348 -1.6 -4.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1778 -1.6 -5.3 Lipopolysaccharide ABC export system, permease protein compare
PP_4480 -1.6 -7.2 arginine N-succinyltransferase, subunit alpha compare
PP_2668 -1.6 -4.5 ABC efflux transporter, ATP-binding protein compare
PP_4892 -1.6 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3105 -1.6 -2.8 conserved membrane protein of unknown function compare
PP_0630 -1.5 -0.9 DNA gyrase inhibitor YacG compare
PP_4004 -1.5 -2.2 DNA translocase FtsK compare
PP_4126 -1.5 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_1322 -1.5 -1.6 putative Lipoprotein compare
PP_1803 -1.5 -9.5 UDP-sugar epimerase compare
PP_3392 -1.4 -1.7 conserved protein of unknown function compare
PP_0340 -1.4 -8.0 Glutamate-ammonia-ligase adenylyltransferase compare
PP_2322 -1.4 -6.7 Major outer membrane lipoprotein compare
PP_5571 -1.4 -1.7 conserved protein of unknown function compare
PP_1214 -1.4 -1.3 putative transcriptional regulatory protein compare
PP_2402 -1.4 -2.5 putative Sensor histidine kinase compare
PP_1629 -1.4 -2.8 Protein RecA compare
PP_5035 -1.3 -5.4 Histidine utilization repressor compare
PP_0164 -1.3 -5.5 conserved protein of unknown function compare
PP_1217 -1.3 -0.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2324 -1.3 -5.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_3286 -1.3 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5075 -1.3 -7.7 glutamate synthase (NADPH) beta subunit compare
PP_4561 -1.3 -1.1 stress response protein compare
PP_0405 -1.3 -9.9 conserved protein of unknown function compare
PP_5706 -1.2 -2.0 Sec translocation complex - SecG subunit compare
PP_0949 -1.2 -3.9 putative ATP-binding protein UPF0042 compare
PP_1702 -1.2 -2.9 Recombination-associated protein RdgC compare
PP_1165 -1.2 -7.0 conserved protein of unknown function compare
PP_5110 -1.2 -1.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1355 -1.2 -9.8 Muropeptide permease AmpG compare
PP_5227 -1.2 -5.5 diaminopimelate decarboxylase compare
PP_4131 -1.2 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_2137 -1.2 -2.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_0879 -1.2 -4.4 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1224 -1.1 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_2145 -1.1 -6.8 beta-N-acetylglucosaminidase compare
PP_3245 -1.1 -1.4 conserved protein of unknown function compare
PP_4124 -1.1 -1.3 NADH-quinone oxidoreductase subunit G compare
PP_4722 -1.1 -3.4 Transcription elongation factor GreA compare
PP_5096 -1.1 -4.0 putative factor involved in shape determination compare
PP_3244 -1.1 -1.8 Magnesium transporter, MgtC family compare
PP_2320 -1.1 -7.8 conserved exported protein of unknown function compare
PP_5191 -1.1 -2.1 conserved exported protein of unknown function compare
PP_1303 -1.1 -4.7 Sulfate adenylyltransferase subunit 2 compare
PP_0856 -1.1 -2.3 conserved lipoprotein of unknown function compare
PP_2441 -1.1 -1.3 conserved protein of unknown function compare
PP_4481 -1.0 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1166 -1.0 -2.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0685 -1.0 -2.6 conserved protein of unknown function compare
PP_0888 -1.0 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1691 -1.0 -1.8 conserved protein of unknown function compare
PP_0880 -1.0 -3.3 dipeptide ABC transporter - putative membrane subunit compare
PP_1426 -1.0 -6.8 L-aspartate oxidase compare
PP_1309 -1.0 -3.7 conserved exported protein of unknown function compare
PP_2414 -1.0 -1.4 conserved exported protein of unknown function compare
PP_2323 -1.0 -5.1 conserved protein of unknown function compare
PP_2429 -1.0 -1.5 putative Membrane protein compare
PP_3580 -1.0 -1.2 conserved protein of unknown function compare
PP_3790 -1.0 -5.7 diaminopimelate epimerase compare
PP_1912 -1.0 -2.6 Phosphate acyltransferase compare
PP_1054 -1.0 -1.4 Type II secretion pathway protein XcpZ compare
PP_3409 -1.0 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_0434 -1.0 -4.5 Anhydro-N-acetylmuramic acid kinase compare
PP_t12 -0.9 -0.7 tRNA-Thr compare
PP_3043 -0.9 -0.6 conserved protein of unknown function compare
PP_2345 -0.9 -2.1 conserved exported protein of unknown function compare
PP_5000 -0.9 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_1304 -0.9 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4130 -0.9 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2306 -0.9 -1.3 conserved exported protein of unknown function compare
PP_4009 -0.9 -2.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_3602 -0.9 -5.0 2,5-dioxovalerate dehydrogenase compare
PP_1654 -0.9 -2.1 cysteine synthase B compare
PP_4058 -0.9 -5.1 1,4-alpha-glucan branching enzyme compare
PP_4116 -0.9 -5.8 isocitrate lyase compare
PP_3924 -0.9 -2.5 conserved protein of unknown function compare
PP_5145 -0.9 -7.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2302 -0.9 -2.3 DNA-binding, ATP-dependent protease compare
PP_5538 -0.9 -3.4 putative ABC transporter, substrate-binding protein compare
PP_2000 -0.9 -1.1 amidophosphoribosyl transferase compare
PP_3098 -0.9 -0.9 conserved protein of unknown function compare
PP_4939 -0.8 -2.9 conserved protein of unknown function compare
PP_1669 -0.8 -4.0 NLP/P60 family protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Glucuronic acid gamma lactone in Pseudomonas putida KT2440

For carbon source D-Glucuronic acid gamma lactone across organisms