Experiment set29IT059 for Pseudomonas putida KT2440

Compare to:

2-Keto-D-gluconic acid hemicalcium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_3511 -6.3 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_4364 -6.1 -4.2 putative Anti-sigma F factor antagonist compare
PP_0787 -5.9 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4724 -5.9 -10.2 Carbamoyl-phosphate synthase small chain compare
PP_0967 -5.8 -7.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.8 -8.9 3-isopropylmalate dehydrogenase compare
PP_5346 -5.8 -6.9 pyruvate carboxylase subunit B compare
PP_0966 -5.8 -7.9 Histidinol dehydrogenase compare
PP_4723 -5.7 -21.4 Carbamoyl-phosphate synthase large chain compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.7 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3105 -5.7 -3.9 conserved membrane protein of unknown function compare
PP_1985 -5.6 -5.5 3-isopropylmalate dehydratase large subunit compare
PP_0422 -5.5 -5.4 Indole-3-glycerol phosphate synthase compare
PP_3380 -5.5 -3.8 2-ketogluconate utilization repressor compare
PP_4909 -5.5 -5.3 phosphoserine phosphatase compare
PP_0290 -5.5 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -5.4 -5.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -5.4 -9.7 Argininosuccinate synthase compare
PP_3377 -5.3 -13.8 2-ketogluconate transporter, putative compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_4680 -5.3 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5348 -5.3 -9.5 Transcriptional regulator, LysR family compare
PP_1231 -5.3 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -5.3 -16.2 Anthranilate synthase component 1 compare
PP_5095 -5.2 -3.6 pyrroline-5-carboxylate reductase compare
PP_4678 -5.1 -14.5 Ketol-acid reductoisomerase compare
PP_3376 -5.1 -5.0 putative phosphonate dehydrogenase compare
PP_5098 -5.1 -8.5 methionine biosynthesis protein MetW compare
PP_1995 -4.9 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -4.9 -8.2 Transaldolase compare
PP_4679 -4.9 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.7 -5.6 Argininosuccinate lyase compare
PP_5347 -4.7 -9.6 pyruvate carboxylase subunit A compare
PP_0593 -4.7 -2.1 putative ribosome-binding factor compare
PP_5097 -4.7 -12.2 homoserine O-acetyltransferase compare
PP_4890 -4.7 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0691 -4.6 -6.1 Glutamate 5-kinase compare
PP_0339 -4.6 -4.5 Pyruvate dehydrogenase E1 component compare
PP_0965 -4.6 -12.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.6 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -4.5 -4.4 Ornithine carbamoyltransferase compare
PP_3378 -4.3 -2.7 putative 2-ketogluconokinase compare
PP_2001 -4.3 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_5128 -4.3 -7.9 Dihydroxy-acid dehydratase compare
PP_1986 -4.1 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.1 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0362 -4.1 -15.2 Biotin synthase compare
PP_2371 -4.0 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5717 -3.9 -2.7 conserved protein of unknown function compare
PP_0082 -3.9 -3.8 tryptophan synthase alpha chain compare
PP_4782 -3.8 -5.1 Phosphomethylpyrimidine kinase compare
PP_0164 -3.7 -9.3 conserved protein of unknown function compare
PP_4696 -3.6 -2.5 Nitrogen regulation protein NR(I) compare
PP_5014 -3.4 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -3.4 -4.7 tryptophan synthase beta chain compare
PP_1025 -3.4 -9.8 2-isopropylmalate synthase compare
PP_4799 -3.3 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0420 -3.3 -9.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -3.2 -7.3 Anthranilate phosphoribosyltransferase compare
PP_1233 -3.2 -4.9 sulfurtransferase compare
PP_0735 -3.1 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_5155 -3.1 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -3.0 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -2.8 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0363 -2.8 -13.2 8-amino-7-oxononanoate synthase compare
PP_5104 -2.7 -7.9 thiazole synthase compare
PP_4789 -2.7 -5.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4984 -2.7 -11.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4695 -2.7 -10.4 Sensory box histidine kinase compare
PP_0366 -2.7 -9.5 dethiobiotin synthetase compare
PP_0364 -2.6 -7.8 pimeloyl-[acp] methyl ester esterase compare
PP_4700 -2.6 -5.3 pantothenate synthetase compare
PP_5303 -2.5 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.5 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_1110 -2.5 -3.6 serine acetyltransferase compare
PP_4943 -2.4 -2.3 putative Glycosyl transferase compare
PP_2370 -2.3 -2.0 conserved protein of unknown function compare
PP_3484 -2.3 -4.6 Response regulator receiver protein compare
PP_4874 -2.2 -1.5 50S ribosomal protein L9 compare
PP_0365 -2.2 -8.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_t12 -2.1 -1.3 tRNA-Thr compare
PP_2581 -2.1 -2.0 conserved protein of unknown function compare
PP_5350 -1.9 -4.5 Transcriptional regulator, RpiR family compare
PP_4922 -1.8 -8.7 Phosphomethylpyrimidine synthase compare
PP_5267 -1.8 -2.1 putative cytochrome c5 compare
PP_1826 -1.8 -2.5 Hydrolase, isochorismatase family compare
PP_3245 -1.8 -1.7 conserved protein of unknown function compare
PP_1362 -1.8 -2.4 pyruvate kinase II compare
PP_2341 -1.8 -3.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5114 -1.7 -1.2 putative adenine methyltransferase compare
PP_3790 -1.7 -7.4 diaminopimelate epimerase compare
PP_5279 -1.7 -2.1 conserved protein of unknown function compare
PP_0025 -1.7 -1.3 hypothetical protein compare
PP_1428 -1.7 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_1109 -1.7 -8.8 Transcriptional regulator, GntR family compare
PP_0406 -1.7 -3.5 Nucleotidyltransferase family protein compare
PP_4058 -1.7 -8.4 1,4-alpha-glucan branching enzyme compare
PP_5090 -1.6 -3.1 putative cell division protein compare
PP_2414 -1.6 -1.6 conserved exported protein of unknown function compare
PP_4131 -1.6 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_5322 -1.6 -6.0 putative metal ion transporter compare
PP_4122 -1.6 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_2378 -1.6 -2.1 Fe/S biogenesis protein NfuA compare
PP_1328 -1.6 -1.7 Protein MraZ compare
PP_4098 -1.6 -1.5 UvrABC system protein C compare
PP_2388 -1.6 -3.8 Transporter, LysE family compare
PP_1045 -1.6 -1.9 Type II secretion pathway protein XcpP compare
PP_2402 -1.5 -2.5 putative Sensor histidine kinase compare
PP_0435 -1.5 -11.8 Peptidase, M23/M37 family compare
PP_3398 -1.5 -1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1022 -1.5 -3.6 glucose 6-phosphate-1-dehydrogenase compare
PP_1824 -1.5 -1.7 Smr domain protein compare
PP_0833 -1.4 -2.6 queuine tRNA-ribosyltransferase compare
PP_2145 -1.4 -5.1 beta-N-acetylglucosaminidase compare
PP_1348 -1.4 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2345 -1.4 -2.3 conserved exported protein of unknown function compare
PP_1355 -1.4 -10.2 Muropeptide permease AmpG compare
PP_0949 -1.3 -4.0 putative ATP-binding protein UPF0042 compare
PP_5328 -1.3 -3.9 putative phosphate transport system permease protein compare
PP_0957 -1.3 -1.7 D-arabinose 5-phosphate isomerase compare
PP_4938 -1.3 -5.6 putative Glycosyl transferase compare
PP_2152 -1.3 -2.1 glycerophosphoryl diester phosphodiesterase compare
PP_3603 -1.3 -5.9 Transcriptional regulator, GntR family compare
PP_1111 -1.3 -3.8 putative Synthetase compare
PP_1553 -1.3 -1.9 conserved protein of unknown function compare
PP_2031 -1.3 -1.7 conserved protein of unknown function compare
PP_1778 -1.3 -4.1 Lipopolysaccharide ABC export system, permease protein compare
PP_4546 -1.3 -3.1 ATP-dependent helicase HrpA compare
PP_1344 -1.3 -2.5 conserved protein of unknown function compare
PP_0872 -1.2 -7.2 Peptide chain release factor 3 compare
PP_1366 -1.2 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_5028 -1.2 -2.1 proline iminopeptidase compare
PP_0846 -1.2 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_0834 -1.2 -1.6 Sec translocation complex subunit YajC compare
PP_2322 -1.2 -5.0 Major outer membrane lipoprotein compare
PP_0789 -1.2 -3.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1764 -1.2 -5.6 Phosphoglycolate phosphatase 2 compare
PP_2044 -1.2 -1.1 conserved inner membrane protein of unknown function compare
PP_4993 -1.2 -2.8 Glutathione synthetase compare
PP_1293 -1.2 -1.2 molybdopterin synthase small subunit compare
PP_4895 -1.2 -2.4 tRNA dimethylallyltransferase compare
PP_0434 -1.2 -8.0 Anhydro-N-acetylmuramic acid kinase compare
PP_2121 -1.2 -1.7 putative Lipoprotein compare
PP_0801 -1.2 -1.1 conserved exported protein of unknown function compare
PP_2324 -1.1 -4.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4126 -1.1 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_0405 -1.1 -8.5 conserved protein of unknown function compare
PP_0291 -1.1 -1.4 conserved protein of unknown function compare
PP_0065 -1.1 -2.7 NAD-binding component of TrK potassium transporter compare
PP_1654 -1.1 -2.2 cysteine synthase B compare
PP_5216 -1.1 -2.3 exopolyphosphatase compare
PP_0368 -1.1 -6.5 putative Acyl-CoA dehydrogenase compare
PP_2253 -1.1 -1.0 Transcriptional regulator, GntR family compare
PP_4008 -1.1 -3.8 ATP-dependent serine protease compare
PP_4130 -1.0 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5146 -1.0 -4.6 RNA pyrophosphohydrolase compare
PP_5202 -1.0 -2.0 putative cell division protein compare
PP_2137 -1.0 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4940 -1.0 -3.6 Putative glycosyltransferase compare
PP_3102 -1.0 -4.1 conserved protein of unknown function compare
PP_3286 -1.0 -2.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0401 -1.0 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1994 -0.9 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_1304 -0.9 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1303 -0.9 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_0880 -0.9 -3.5 dipeptide ABC transporter - putative membrane subunit compare
PP_2309 -0.9 -1.4 conserved protein of unknown function compare
PP_5701 -0.9 -0.7 conserved protein of unknown function compare
PP_2575 -0.9 -1.3 conserved exported protein of unknown function compare
PP_1237 -0.9 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4120 -0.9 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_4964 -0.9 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4726 -0.9 -1.9 Chaperone protein DnaJ compare
PP_4124 -0.9 -1.2 NADH-quinone oxidoreductase subunit G compare
PP_4830 -0.9 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_2302 -0.9 -2.2 DNA-binding, ATP-dependent protease compare
PP_2110 -0.9 -1.9 putative ribosomal large subunit pseudouridine synthase compare
PP_3808 -0.9 -2.1 Antibiotic synthesis protein MbtH compare
PP_5338 -0.9 -1.5 aspartate ammonia-lyase compare
PP_2931 -0.9 -2.6 conserved protein of unknown function compare
PP_5331 -0.8 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_1009 -0.8 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5644 -0.8 -2.4 conserved membrane protein of unknown function compare
PP_0856 -0.8 -1.8 conserved lipoprotein of unknown function compare
PP_1780 -0.8 -6.9 putative mannosyltransferase compare
PP_0653 -0.8 -0.9 conserved protein of unknown function compare
PP_2000 -0.8 -1.1 amidophosphoribosyl transferase compare
PP_1801 -0.8 -5.2 Glycosyl transferase WbpY compare
PP_2306 -0.8 -1.5 conserved exported protein of unknown function compare
PP_5230 -0.8 -2.4 Tyrosine recombinase XerC compare
PP_5483 -0.8 -0.9 conserved protein of unknown function compare
PP_5500 -0.8 -3.0 protein of unknown function compare
PP_5705 -0.8 -1.0 protein of unknown function compare
PP_1663 -0.8 -4.0 conserved exported protein of unknown function compare
PP_3580 -0.8 -1.1 conserved protein of unknown function compare
PP_1629 -0.8 -1.9 Protein RecA compare
PP_1217 -0.8 -1.2 Holliday junction ATP-dependent DNA helicase RuvB compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate in Pseudomonas putida KT2440

For carbon source 2-Keto-D-gluconic acid hemicalcium salt hydrate across organisms