Experiment set29IT058 for Pseudomonas putida KT2440

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D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -8.0 -9.5 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.7 -22.4 Carbamoyl-phosphate synthase large chain compare
PP_1169 -6.3 -6.2 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) conserved
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_3599 -6.1 -6.0 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PP_1167 -6.1 -5.9 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) conserved
PP_1985 -6.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_0290 -5.9 -4.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1171 -5.9 -9.9 Uronate dehydrogenase (EC 1.1.1.203) (from data) conserved
PP_0420 -5.9 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3601 -5.9 -5.7 galactarate dehydratase conserved
PP_1988 -5.9 -8.9 3-isopropylmalate dehydrogenase compare
PP_0417 -5.8 -12.5 Anthranilate synthase component 1 compare
PP_4680 -5.8 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4678 -5.8 -10.4 Ketol-acid reductoisomerase compare
PP_0966 -5.6 -8.5 Histidinol dehydrogenase compare
PP_1088 -5.5 -9.9 Argininosuccinate synthase compare
PP_1995 -5.4 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -5.3 -9.6 Branched-chain-amino-acid aminotransferase compare
PP_0967 -5.3 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4364 -5.3 -5.2 putative Anti-sigma F factor antagonist compare
PP_5095 -5.3 -3.6 pyrroline-5-carboxylate reductase compare
PP_2001 -5.3 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_5015 -5.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -5.2 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5322 -5.0 -3.5 putative metal ion transporter compare
PP_4909 -5.0 -7.7 phosphoserine phosphatase compare
PP_1170 -5.0 -7.7 D-glucaro-1,5-lactonase UxuL (from data) conserved
PP_4679 -5.0 -6.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -5.0 -15.4 2-isopropylmalate synthase compare
PP_0421 -5.0 -6.8 Anthranilate phosphoribosyltransferase compare
PP_5097 -5.0 -12.1 homoserine O-acetyltransferase compare
PP_1168 -5.0 -5.9 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) conserved
PP_0184 -5.0 -4.8 Argininosuccinate lyase compare
PP_0339 -4.9 -3.4 Pyruvate dehydrogenase E1 component compare
PP_0289 -4.8 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4890 -4.7 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_1165 -4.7 -15.2 conserved protein of unknown function conserved
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0691 -4.6 -5.3 Glutamate 5-kinase compare
PP_1079 -4.4 -4.3 Ornithine carbamoyltransferase compare
PP_5098 -4.4 -8.4 methionine biosynthesis protein MetW compare
PP_5128 -4.4 -7.2 Dihydroxy-acid dehydratase compare
PP_0025 -4.3 -2.1 hypothetical protein compare
PP_5289 -4.3 -5.0 Acetylglutamate kinase compare
PP_2371 -4.2 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -4.2 -8.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_0965 -4.0 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_0291 -3.9 -5.3 conserved protein of unknown function compare
PP_1231 -3.8 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5104 -3.8 -9.2 thiazole synthase compare
PP_3600 -3.7 -7.8 glucarate transporter conserved
PP_5155 -3.6 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1233 -3.6 -4.9 sulfurtransferase compare
PP_4696 -3.6 -2.5 Nitrogen regulation protein NR(I) compare
PP_0435 -3.6 -21.0 Peptidase, M23/M37 family compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5075 -3.5 -13.9 glutamate synthase (NADPH) beta subunit compare
PP_3999 -3.5 -4.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2370 -3.4 -3.6 conserved protein of unknown function compare
PP_4799 -3.4 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0787 -3.4 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4789 -3.3 -6.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5303 -3.2 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1110 -3.2 -7.4 serine acetyltransferase compare
PP_0735 -3.2 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_3105 -3.1 -3.1 conserved membrane protein of unknown function compare
PP_4782 -3.1 -4.3 Phosphomethylpyrimidine kinase compare
PP_1826 -3.0 -2.9 Hydrolase, isochorismatase family compare
PP_2328 -3.0 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_4922 -2.9 -14.1 Phosphomethylpyrimidine synthase compare
PP_0001 -2.9 -2.0 probable chromosome-partitioning protein compare
PP_2388 -2.8 -4.6 Transporter, LysE family compare
PP_4891 -2.7 -3.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4700 -2.7 -5.4 pantothenate synthetase compare
PP_4695 -2.7 -9.7 Sensory box histidine kinase compare
PP_1224 -2.7 -6.6 periplasmic subunit of the TolQRA transport system compare
PP_4099 -2.6 -20.3 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5076 -2.6 -15.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_2390 -2.6 -6.2 Transcriptional regulator, LysR family compare
PP_0834 -2.5 -2.0 Sec translocation complex subunit YajC compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4892 -2.5 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0164 -2.5 -9.3 conserved protein of unknown function compare
PP_1650 -2.3 -13.2 Sensor protein GacS compare
PP_5146 -2.3 -9.6 RNA pyrophosphohydrolase compare
PP_2402 -2.3 -2.7 putative Sensor histidine kinase compare
PP_3245 -2.3 -1.6 conserved protein of unknown function compare
PP_1664 -2.2 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1348 -2.1 -7.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4058 -2.1 -11.1 1,4-alpha-glucan branching enzyme compare
PP_1779 -2.1 -6.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4131 -2.1 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_1208 -2.1 -2.8 conserved protein of unknown function, SlyX family compare
PP_0368 -2.1 -10.3 putative Acyl-CoA dehydrogenase compare
PP_0406 -2.0 -4.5 Nucleotidyltransferase family protein compare
PP_2280 -1.9 -2.5 conserved protein of unknown function compare
PP_2168 -1.8 -8.6 Transaldolase compare
PP_2868 -1.8 -6.9 Transcriptional regulator, Cro/CI family compare
PP_3244 -1.8 -4.6 Magnesium transporter, MgtC family compare
PP_4938 -1.8 -7.7 putative Glycosyl transferase compare
PP_1109 -1.7 -9.6 Transcriptional regulator, GntR family compare
PP_4940 -1.7 -5.7 Putative glycosyltransferase compare
PP_2217 -1.7 -2.5 enoyl-CoA hydratase compare
PP_5717 -1.7 -1.5 conserved protein of unknown function compare
PP_1778 -1.7 -5.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4130 -1.6 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0405 -1.6 -12.8 conserved protein of unknown function compare
PP_4936 -1.6 -6.2 O-antigen polymerase compare
PP_2302 -1.6 -3.0 DNA-binding, ATP-dependent protease compare
PP_3484 -1.6 -4.0 Response regulator receiver protein compare
PP_1780 -1.6 -12.5 putative mannosyltransferase compare
PP_1801 -1.6 -9.1 Glycosyl transferase WbpY compare
PP_1804 -1.6 -7.9 Glycosyl transferase WbpL compare
PP_1355 -1.6 -13.4 Muropeptide permease AmpG compare
PP_0362 -1.5 -9.0 Biotin synthase compare
PP_1426 -1.5 -9.7 L-aspartate oxidase compare
PP_2145 -1.5 -7.5 beta-N-acetylglucosaminidase compare
PP_4480 -1.5 -6.5 arginine N-succinyltransferase, subunit alpha compare
PP_1800 -1.5 -8.1 Oxidoreductase Rmd compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2322 -1.4 -6.5 Major outer membrane lipoprotein compare
PP_1802 -1.4 -10.0 glycosyl transferase compare
PP_0957 -1.4 -1.6 D-arabinose 5-phosphate isomerase compare
PP_3821 -1.4 -6.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4008 -1.4 -5.2 ATP-dependent serine protease compare
PP_3286 -1.4 -4.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1805 -1.4 -10.5 Polysaccharide biosynthesis protein compare
PP_3924 -1.4 -2.5 conserved protein of unknown function compare
PP_1562 -1.4 -1.9 putative Phage terminase, small subunit compare
PP_1799 -1.4 -8.5 GDP-mannose 4,6-dehydratase compare
PP_5227 -1.4 -6.1 diaminopimelate decarboxylase compare
PP_0833 -1.4 -2.9 queuine tRNA-ribosyltransferase compare
PP_3790 -1.4 -5.8 diaminopimelate epimerase compare
PP_2088 -1.3 -3.3 RNA polymerase sigma factor SigX compare
PP_2324 -1.3 -6.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1776 -1.3 -9.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0236 -1.3 -1.6 NAD(P)H-dependent FMN reductase subunit compare
PP_5350 -1.3 -3.4 Transcriptional regulator, RpiR family compare
PP_5575 -1.3 -2.0 conserved protein of unknown function compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_2378 -1.3 -2.2 Fe/S biogenesis protein NfuA compare
PP_4699 -1.3 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1111 -1.2 -4.3 putative Synthetase compare
PP_1128 -1.2 -2.4 OmpA family protein compare
PP_4917 -1.2 -3.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0434 -1.2 -7.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1048 -1.2 -2.2 putative protein secretion protein for export compare
PP_5035 -1.2 -5.1 Histidine utilization repressor compare
PP_5453 -1.2 -1.8 conserved protein of unknown function compare
PP_1304 -1.2 -6.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2575 -1.2 -1.7 conserved exported protein of unknown function compare
PP_2000 -1.2 -1.1 amidophosphoribosyl transferase compare
PP_4124 -1.2 -1.1 NADH-quinone oxidoreductase subunit G compare
PP_2307 -1.2 -1.2 conserved protein of unknown function compare
PP_4943 -1.1 -1.9 putative Glycosyl transferase compare
PP_0938 -1.1 -6.0 conserved protein of unknown function compare
PP_4910 -1.1 -1.1 conserved protein of unknown function compare
PP_5145 -1.1 -9.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1803 -1.1 -7.8 UDP-sugar epimerase compare
PP_0949 -1.1 -3.8 putative ATP-binding protein UPF0042 compare
PP_3946 -1.1 -1.6 HTH-type transcriptional repressor NicR compare
PP_0063 -1.1 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2433 -1.1 -1.8 conserved protein of unknown function compare
PP_3891 -1.1 -2.5 conserved protein of unknown function compare
PP_1862 -1.1 -2.1 conserved membrane protein of unknown function compare
PP_0612 -1.1 -6.1 FAD-dependent glycine/D-amino acid oxidase compare
PP_2136 -1.1 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1309 -1.1 -3.7 conserved exported protein of unknown function compare
PP_4481 -1.1 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2499 -1.0 -0.8 conserved protein of unknown function compare
PP_4126 -1.0 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_0246 -1.0 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_0856 -1.0 -2.1 conserved lipoprotein of unknown function compare
PP_5571 -1.0 -1.5 conserved protein of unknown function compare
PP_5027 -1.0 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0841 -1.0 -2.7 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0066 -1.0 -4.0 Ribosomal RNA small subunit methyltransferase B compare
PP_3098 -1.0 -1.1 conserved protein of unknown function compare
PP_0261 -1.0 -3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3590 -1.0 -5.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2323 -1.0 -4.8 conserved protein of unknown function compare
PP_2320 -1.0 -7.0 conserved exported protein of unknown function compare
PP_5114 -1.0 -0.9 putative adenine methyltransferase compare
PP_5475 -0.9 -0.9 conserved protein of unknown function compare
PP_3602 -0.9 -5.5 2,5-dioxovalerate dehydrogenase compare
PP_2910 -0.9 -5.7 L-2-hydroxyglutarate oxidase compare
PP_4129 -0.9 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2929 -0.9 -5.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0872 -0.9 -5.9 Peptide chain release factor 3 compare
PP_4803 -0.9 -4.9 D-alanyl-D-alanine carboxypeptidase compare
PP_2806 -0.9 -4.0 Transcriptional regulator, TetR family compare
PP_1999 -0.9 -1.8 membrane protein required for colicin V production compare
PP_2748 -0.9 -1.9 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pseudomonas putida KT2440

For carbon source D-Galacturonic Acid monohydrate across organisms