Experiment set29IT057 for Pseudomonas putida KT2440

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D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.9 -20.8 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.7 -10.8 Carbamoyl-phosphate synthase small chain compare
PP_4890 -6.6 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -6.4 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_1167 -6.3 -6.1 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) conserved
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_4364 -6.2 -4.3 putative Anti-sigma F factor antagonist compare
PP_0417 -6.2 -8.5 Anthranilate synthase component 1 compare
PP_3601 -6.2 -4.3 galactarate dehydratase conserved
PP_3599 -6.2 -6.0 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PP_1170 -6.1 -4.2 D-glucaro-1,5-lactonase UxuL (from data) conserved
PP_1171 -6.1 -10.1 Uronate dehydrogenase (EC 1.1.1.203) (from data) conserved
PP_0290 -6.0 -4.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -5.9 -9.9 3-isopropylmalate dehydrogenase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -5.8 -11.1 Ketol-acid reductoisomerase compare
PP_2001 -5.8 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_5015 -5.7 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1995 -5.7 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -5.7 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -5.7 -7.7 Glutamate 5-kinase compare
PP_0966 -5.6 -8.6 Histidinol dehydrogenase compare
PP_1985 -5.6 -5.5 3-isopropylmalate dehydratase large subunit compare
PP_5185 -5.6 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1169 -5.6 -7.7 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) conserved
PP_4680 -5.6 -10.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -5.5 -9.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -5.5 -5.4 phosphoserine phosphatase compare
PP_1168 -5.4 -3.8 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) conserved
PP_4679 -5.4 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -5.2 -10.5 Argininosuccinate synthase compare
PP_1025 -5.1 -14.9 2-isopropylmalate synthase compare
PP_0421 -5.1 -6.9 Anthranilate phosphoribosyltransferase compare
PP_0965 -4.9 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -4.9 -9.4 methionine biosynthesis protein MetW compare
PP_5322 -4.9 -4.8 putative metal ion transporter compare
PP_2388 -4.8 -4.7 Transporter, LysE family compare
PP_4999 -4.7 -3.3 dihydroorotase-like protein compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5097 -4.7 -12.8 homoserine O-acetyltransferase compare
PP_0184 -4.6 -5.5 Argininosuccinate lyase compare
PP_1165 -4.5 -14.1 conserved protein of unknown function conserved
PP_2327 -4.5 -9.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -4.5 -6.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5104 -4.5 -9.6 thiazole synthase compare
PP_0289 -4.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5075 -4.4 -14.9 glutamate synthase (NADPH) beta subunit compare
PP_5128 -4.2 -7.5 Dihydroxy-acid dehydratase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_0339 -4.0 -5.5 Pyruvate dehydrogenase E1 component compare
PP_1826 -4.0 -2.7 Hydrolase, isochorismatase family compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_0787 -3.9 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5155 -3.8 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2371 -3.8 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0246 -3.8 -3.6 two-component system DNA-binding response transcriptional dual regulator compare
PP_5095 -3.8 -3.6 pyrroline-5-carboxylate reductase compare
PP_1079 -3.7 -5.1 Ornithine carbamoyltransferase compare
PP_4696 -3.7 -2.5 Nitrogen regulation protein NR(I) compare
PP_4789 -3.6 -5.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_3999 -3.5 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0435 -3.4 -20.7 Peptidase, M23/M37 family compare
PP_4891 -3.3 -2.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3600 -3.3 -7.5 glucarate transporter conserved
PP_2370 -3.2 -4.2 conserved protein of unknown function compare
PP_1233 -3.2 -4.8 sulfurtransferase compare
PP_4695 -3.1 -12.2 Sensory box histidine kinase compare
PP_1468 -3.0 -2.1 Tyrosine recombinase XerD compare
PP_5076 -2.8 -17.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_4782 -2.8 -5.0 Phosphomethylpyrimidine kinase compare
PP_4922 -2.8 -11.3 Phosphomethylpyrimidine synthase compare
PP_2328 -2.8 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_4099 -2.8 -21.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5146 -2.8 -9.4 RNA pyrophosphohydrolase compare
PP_4700 -2.7 -5.4 pantothenate synthetase compare
PP_2390 -2.7 -6.8 Transcriptional regulator, LysR family compare
PP_1664 -2.6 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_3946 -2.6 -2.5 HTH-type transcriptional repressor NicR compare
PP_1650 -2.5 -13.0 Sensor protein GacS compare
PP_4892 -2.5 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4874 -2.4 -1.6 50S ribosomal protein L9 compare
PP_3244 -2.3 -4.5 Magnesium transporter, MgtC family compare
PP_0164 -2.3 -9.5 conserved protein of unknown function compare
PP_4004 -2.3 -1.6 DNA translocase FtsK compare
PP_1110 -2.3 -2.8 serine acetyltransferase compare
PP_5303 -2.1 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3105 -2.1 -3.1 conserved membrane protein of unknown function compare
PP_1224 -2.0 -6.4 periplasmic subunit of the TolQRA transport system compare
PP_4120 -2.0 -1.4 NADH-quinone oxidoreductase subunit B compare
PP_1348 -2.0 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0368 -2.0 -9.1 putative Acyl-CoA dehydrogenase compare
PP_0291 -2.0 -2.7 conserved protein of unknown function compare
PP_2568 -2.0 -2.1 Ring-cleaving dioxygenase compare
PP_0735 -1.9 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_4131 -1.9 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4130 -1.9 -5.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2168 -1.9 -8.6 Transaldolase compare
PP_0834 -1.8 -2.8 Sec translocation complex subunit YajC compare
PP_0025 -1.8 -1.5 hypothetical protein compare
PP_1109 -1.8 -8.9 Transcriptional regulator, GntR family compare
PP_1111 -1.7 -6.0 putative Synthetase compare
PP_5110 -1.7 -2.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0405 -1.7 -12.1 conserved protein of unknown function compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1355 -1.7 -14.4 Muropeptide permease AmpG compare
PP_5706 -1.7 -2.8 Sec translocation complex - SecG subunit compare
PP_4008 -1.7 -5.6 ATP-dependent serine protease compare
PP_4720 -1.7 -1.4 putative RNA binding protein compare
PP_2136 -1.7 -3.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4126 -1.6 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_4940 -1.6 -5.9 Putative glycosyltransferase compare
PP_5216 -1.6 -3.6 exopolyphosphatase compare
PP_2868 -1.6 -6.1 Transcriptional regulator, Cro/CI family compare
PP_1632 -1.5 -1.3 conserved protein of unknown function compare
PP_0406 -1.5 -4.9 Nucleotidyltransferase family protein compare
PP_1176 -1.5 -2.4 conserved protein of unknown function compare
PP_4480 -1.5 -6.9 arginine N-succinyltransferase, subunit alpha compare
PP_0852 -1.5 -2.2 Transcriptional regulator, Cro/CI family compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4829 -1.4 -3.3 putative precorrin-3B synthase compare
PP_3790 -1.4 -7.7 diaminopimelate epimerase compare
PP_0063 -1.4 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3392 -1.4 -2.0 conserved protein of unknown function compare
PP_5028 -1.4 -2.7 proline iminopeptidase compare
PP_1805 -1.4 -10.9 Polysaccharide biosynthesis protein compare
PP_2000 -1.4 -1.0 amidophosphoribosyl transferase compare
PP_1779 -1.4 -5.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4938 -1.4 -5.1 putative Glycosyl transferase compare
PP_5313 -1.4 -2.2 DNA-binding protein HU-alpha compare
PP_4828 -1.4 -1.3 Precorrin-8X methylmutase compare
PP_1801 -1.3 -7.5 Glycosyl transferase WbpY compare
PP_1780 -1.3 -10.6 putative mannosyltransferase compare
PP_1426 -1.3 -9.3 L-aspartate oxidase compare
PP_0434 -1.3 -9.4 Anhydro-N-acetylmuramic acid kinase compare
PP_5571 -1.3 -1.9 conserved protein of unknown function compare
PP_2378 -1.3 -2.3 Fe/S biogenesis protein NfuA compare
PP_3052 -1.3 -1.2 conserved protein of unknown function compare
PP_1799 -1.3 -8.5 GDP-mannose 4,6-dehydratase compare
PP_3398 -1.3 -1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1802 -1.3 -9.4 glycosyl transferase compare
PP_2322 -1.3 -7.4 Major outer membrane lipoprotein compare
PP_0377 -1.3 -2.1 coenzyme PQQ synthesis protein D compare
PP_0801 -1.3 -1.3 conserved exported protein of unknown function compare
PP_4058 -1.3 -6.0 1,4-alpha-glucan branching enzyme compare
PP_2929 -1.2 -7.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4699 -1.2 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4964 -1.2 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2145 -1.2 -6.0 beta-N-acetylglucosaminidase compare
PP_4939 -1.2 -4.6 conserved protein of unknown function compare
PP_0653 -1.2 -1.4 conserved protein of unknown function compare
PP_3484 -1.2 -2.3 Response regulator receiver protein compare
PP_3924 -1.2 -3.0 conserved protein of unknown function compare
PP_3243 -1.2 -3.5 Acetyltransferase, GNAT family compare
PP_3821 -1.2 -7.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1804 -1.2 -6.6 Glycosyl transferase WbpL compare
PP_1778 -1.2 -4.1 Lipopolysaccharide ABC export system, permease protein compare
PP_2442 -1.2 -1.7 conserved protein of unknown function, DUF480 family compare
PP_1941 -1.2 -5.4 conserved protein of unknown function compare
PP_3286 -1.1 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0001 -1.1 -1.3 probable chromosome-partitioning protein compare
PP_2499 -1.1 -1.3 conserved protein of unknown function compare
PP_1776 -1.1 -8.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1493 -1.1 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2337 -1.1 -1.8 aconitate isomerase compare
PP_5090 -1.1 -2.1 putative cell division protein compare
PP_1800 -1.1 -6.0 Oxidoreductase Rmd compare
PP_2402 -1.1 -1.9 putative Sensor histidine kinase compare
PP_1309 -1.1 -3.5 conserved exported protein of unknown function compare
PP_3602 -1.1 -5.0 2,5-dioxovalerate dehydrogenase compare
PP_4895 -1.1 -2.4 tRNA dimethylallyltransferase compare
PP_5717 -1.1 -1.6 conserved protein of unknown function compare
PP_2820 -1.1 -3.7 HTH-type transcriptional regulator nfxB compare
PP_4936 -1.1 -4.6 O-antigen polymerase compare
PP_4271 -1.1 -0.7 conserved protein of unknown function compare
PP_0362 -1.1 -6.9 Biotin synthase compare
PP_4124 -1.1 -1.2 NADH-quinone oxidoreductase subunit G compare
PP_1216 -1.1 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0949 -1.0 -3.3 putative ATP-binding protein UPF0042 compare
PP_3241 -1.0 -1.3 conserved exported protein of unknown function compare
PP_0872 -1.0 -5.7 Peptide chain release factor 3 compare
PP_4902 -1.0 -1.3 Oligoribonuclease compare
PP_3037 -1.0 -1.4 C4-type zinc finger protein, DksA/TraR family compare
PP_1803 -1.0 -7.4 UDP-sugar epimerase compare
PP_4129 -1.0 -1.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4943 -1.0 -1.3 putative Glycosyl transferase compare
PP_5114 -1.0 -0.9 putative adenine methyltransferase compare
PP_5055 -1.0 -2.4 Sulfurtransferase compare
PP_1912 -1.0 -3.3 Phosphate acyltransferase compare
PP_5486 -1.0 -1.1 conserved protein of unknown function compare
PP_4993 -1.0 -2.5 Glutathione synthetase compare
PP_1303 -1.0 -5.7 Sulfate adenylyltransferase subunit 2 compare
PP_1669 -0.9 -3.7 NLP/P60 family protein compare
PP_5145 -0.9 -8.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3971 -0.9 -1.5 conserved protein of unknown function compare
PP_5329 -0.9 -4.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0833 -0.9 -2.2 queuine tRNA-ribosyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Pseudomonas putida KT2440

For carbon source D-Galacturonic Acid monohydrate across organisms