Experiment set29IT056 for Pseudomonas putida KT2440

Compare to:

D-Fructose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +1.2 9.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_1004 +1.1 2.7 conserved protein of unknown function compare
PP_1215 +1.1 0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_5701 +1.0 2.1 conserved protein of unknown function compare
PP_4937 +1.0 4.7 toluene tolerance protein compare
PP_0274 +1.0 1.1 putative transcriptional regulator containing HTH domain compare
PP_2889 +1.0 4.1 putative Transmembrane regulator PrtR compare
PP_5083 +0.9 2.2 putative Type IV pili biogenesis protein PilM compare
PP_5598 +0.9 3.3 conserved protein of unknown function compare
PP_5475 +0.8 1.2 conserved protein of unknown function compare
PP_2526 +0.8 2.5 conserved membrane protein of unknown function compare
PP_4171 +0.8 6.9 conserved exported protein of unknown function compare
PP_0792 +0.8 2.9 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_1824 +0.7 1.6 Smr domain protein compare
PP_3876 +0.7 1.7 conserved protein of unknown function compare
PP_4944 +0.7 2.0 Carbamoyltransferase compare
PP_4942 +0.7 1.1 conserved protein of unknown function compare
PP_0125 +0.7 2.4 putative cytochrome c-type protein compare
PP_5110 +0.7 0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4207 +0.7 2.6 conserved protein of unknown function compare
PP_4384 +0.7 4.1 Flagellar L-ring protein compare
PP_1055 +0.6 0.8 Type II secretion pathway protein GspN compare
PP_1041 +0.6 1.3 twin arginine protein export complex subunit compare
PP_0643 +0.6 1.1 protein of unknown function compare
PP_4383 +0.6 2.9 Flagellar P-ring protein compare
PP_1553 +0.6 1.5 conserved protein of unknown function compare
PP_0574 +0.6 5.1 DNA-binding response regulator, LuxR family compare
PP_0958 +0.6 3.1 phospholipid ABC transporter ATP-binding subunit compare
PP_2615 +0.6 1.9 hemolysin-coregulated protein compare
PP_3693 +0.6 1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0007 +0.6 1.3 conserved hypothetical protein compare
PP_1381 +0.6 1.1 4-carboxymuconolactone decarboxylase compare
PP_5232 +0.6 0.9 conserved protein of unknown function compare
PP_2547 +0.6 1.9 Transcriptional regulator, LysR family compare
PP_5176 +0.6 1.1 conserved protein of unknown function compare
PP_0804 +0.6 3.9 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5393 +0.6 1.0 putative metal-binding chaperone compare
PP_1515 +0.6 2.5 Transcriptional regulator, tetR family compare
PP_4271 +0.6 0.5 conserved protein of unknown function compare
PP_4365 +0.6 3.7 Flagellar protein FliJ compare
PP_0357 +0.6 2.2 ACT domain protein compare
PP_4569 +0.6 1.4 conserved protein of unknown function compare
PP_3773 +0.6 1.6 conserved protein of unknown function compare
PP_0683 +0.6 1.6 conserved protein of unknown function compare
PP_1736 +0.6 2.2 conserved protein of unknown function compare
PP_0594 +0.6 4.4 Transcriptional regulator, TetR family compare
PP_1113 +0.6 3.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4373 +0.6 4.0 Transcriptional regulator FleQ compare
PP_4370 +0.6 3.2 Flagellar hook-basal body complex protein FliE compare
PP_0827 +0.6 2.3 putative phosphonate transport system permease protein PtxC compare
PP_4094 +0.5 1.8 conserved protein of unknown function compare
PP_5552 +0.5 1.7 conserved protein of unknown function compare
PP_5471 +0.5 0.8 putative response regulator receiver protein compare
PP_2525 +0.5 2.2 conserved protein of unknown function compare
PP_2654 +0.5 2.2 putative Glutathione S-transferase compare
PP_2793 +0.5 0.8 Acyl-CoA dehydrogenase family protein compare
PP_2848 +0.5 1.3 urease accessory protein compare
PP_5388 +0.5 2.7 probable exported copper efflux protein compare
PP_3929 +0.5 2.3 conserved protein of unknown function compare
PP_2511 +0.5 1.6 conserved protein of unknown function compare
PP_3384 +0.5 2.2 gluconate 2-dehydrogenase gamma subunit compare
PP_5730 +0.5 2.3 conserved protein of unknown function compare
PP_1021 +0.5 2.8 DNA-binding transcriptional regulator compare
PP_4313 +0.5 2.2 putative peptidylprolyl isomerase compare
PP_2509 +0.5 2.1 conserved protein of unknown function compare
PP_4396 +0.5 2.4 conserved protein of unknown function compare
PP_4069 +0.5 2.0 conserved protein of unknown function compare
PP_4394 +0.5 3.4 flagella basal body P-ring formation protein compare
PP_0919 +0.5 1.6 conserved protein of unknown function compare
PP_3512 +0.5 1.5 conserved membrane protein of unknown function compare
PP_4366 +0.5 4.0 flagellum-specific ATP synthase compare
PP_2695 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_2061 +0.5 1.4 conserved protein of unknown function compare
PP_3083 +0.5 2.2 putative Membrane protein compare
PP_2291 +0.5 1.6 conserved protein of unknown function compare
PP_0355 +0.5 2.3 Response regulator compare
PP_4172 +0.5 2.3 conserved exported protein of unknown function compare
PP_2705 +0.5 1.0 conserved protein of unknown function compare
PP_2759 +0.5 1.7 ribose ABC transporter - ATP-binding subunit compare
PP_0852 +0.5 1.4 Transcriptional regulator, Cro/CI family compare
PP_3365 +0.5 1.3 Acetolactate synthase compare
PP_4133 +0.5 1.1 Transcriptional regulator-related protein compare
PP_1761 +0.5 3.6 diguanylate cyclase with phosphodiesterase domain compare
PP_2459 +0.5 0.7 ribose pyranase compare
PP_4739 +0.5 1.1 conserved protein of unknown function compare
PP_4341 +0.5 2.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4368 +0.5 2.9 flagellar motor switch protein compare
PP_1269 +0.5 0.8 Universal stress protein family compare
PP_0711 +0.5 1.2 putative hydrolase compare
PP_1903 +0.5 1.4 putative phosphotyrosine-protein phosphatase compare
PP_5359 +0.5 1.1 CobW/P47K family protein compare
PP_4050 +0.5 4.1 glycogen synthase compare
PP_5533 +0.5 0.8 conserved protein of unknown function compare
PP_2539 +0.5 2.0 Transcriptional regulator, LysR family compare
PP_3398 +0.5 1.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5278 +0.5 2.4 4-guanidinobutyraldehyde dehydrogenase compare
PP_0305 +0.5 1.8 HTH-type transcriptional regulator CdhR compare
PP_1609 +0.5 1.1 conserved protein of unknown function compare
PP_4859 +0.5 2.5 Transcriptional regulator, TetR family compare
PP_5711 +0.5 1.7 protein of unknown function compare
PP_1987 +0.5 1.3 Methlytransferase, UbiE/COQ5 family compare
PP_2943 +0.4 2.0 putative Cytochrome c551 peroxidase compare
PP_4352 +0.4 3.5 flagellin export apparatus, substrate specificity protein compare
PP_0666 +0.4 1.2 conserved protein of unknown function compare
PP_5073 +0.4 1.1 conserved exported protein of unknown function compare
PP_2899 +0.4 0.9 conserved exported protein of unknown function compare
PP_3035 +0.4 1.0 conserved protein of unknown function compare
PP_4902 +0.4 0.8 Oligoribonuclease compare
PP_2023 +0.4 1.9 Glutathione S-transferase family protein compare
PP_2645 +0.4 3.2 magnesium transporter, ATP-dependent compare
PP_3444 +0.4 1.3 Glyoxalase family protein compare
PP_2347 +0.4 2.3 DNA-binding response regulator compare
PP_5058 +0.4 2.5 Carboxy-terminal-processing protease compare
PP_4073 +0.4 1.0 conserved exported protein of unknown function compare
PP_2976 +0.4 1.5 putative transposase compare
PP_3333 +0.4 1.6 conserved protein of unknown function compare
PP_0805 +0.4 3.0 Outer membrane efflux protein compare
PP_0874 +0.4 1.0 conserved protein of unknown function compare
PP_4367 +0.4 1.4 Flagellar assembly protein FliH compare
PP_0755 +0.4 2.5 conserved protein of unknown function compare
PP_5488 +0.4 1.8 conserved protein of unknown function compare
PP_5201 +0.4 1.0 conserved protein of unknown function, UPF0149 family compare
PP_5358 +0.4 2.5 conserved protein of unknown function compare
PP_2622 +0.4 1.0 conserved protein of unknown function compare
PP_2215 +0.4 1.4 acetyl-CoA acetyltransferase compare
PP_5485 +0.4 1.9 putative N-acetyltransferase, GNAT domain compare
PP_1322 +0.4 0.9 putative Lipoprotein compare
PP_2387 +0.4 1.9 conserved protein of unknown function compare
PP_0424 +0.4 1.7 DNA-binding transcriptional dual regulator compare
PP_2358 +0.4 2.1 putative Type 1 pili subunit CsuA/B protein compare
PP_3903 +0.4 1.0 conserved protein of unknown function compare
PP_1459 +0.4 2.0 CBS domain protein compare
PP_4388 +0.4 3.3 Flagellar hook protein FlgE compare
PP_3040 +0.4 1.2 Pyocin R2_PP, holin compare
PP_4785 +0.4 1.9 conserved exported protein of unknown function compare
PP_4980 +0.4 2.4 ATP-dependent RNA helicase compare
PP_1692 +0.4 1.2 conserved protein of unknown function compare
PP_1536 +0.4 1.2 conserved protein of unknown function compare
PP_0806 +0.4 3.8 putative Surface adhesion protein compare
PP_4372 +0.4 2.1 Sensory box histidine kinase FleS compare
PP_4204 +0.4 1.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4961 +0.4 1.0 putative Lipoprotein compare
PP_3328 +0.4 0.9 putative Ring-cleaving dioxygenase compare
PP_2332 +0.4 2.0 conserved exported protein of unknown function compare
PP_4406 +0.4 0.9 conserved protein of unknown function compare
PP_2142 +0.4 1.2 Cell division inhibitor SulA compare
PP_0191 +0.4 0.8 Transcriptional regulatory protein AlgQ compare
PP_4355 +0.4 1.7 flagellar export apparatus subunit compare
PP_4356 +0.4 0.9 Flagellar protein FliO compare
PP_3247 +0.4 1.2 Transporter, bile acid/Na+ symporter family compare
PP_3400 +0.4 1.7 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_5221 +0.4 0.9 conserved protein of unknown function, UPF0178 family compare
PP_0168 +0.4 3.5 putative surface adhesion protein compare
PP_3460 +0.4 1.3 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_0803 +0.4 2.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5423 +0.4 0.6 conserved membrane protein of unknown function compare
PP_0165 +0.4 3.0 GGDEF domain protein compare
PP_4353 +0.4 2.2 Flagellar biosynthetic protein fliR compare
PP_4386 +0.4 2.1 flagellar basal-body rod protein FlgF compare
PP_4517 +0.4 0.9 conserved protein of unknown function compare
PP_2292 +0.4 1.4 conserved protein of unknown function compare
PP_0490 +0.4 1.6 formate dehydrogenase-O, beta subunit compare
PP_0385 +0.4 1.8 putative serine acetyltransferase compare
PP_1912 +0.4 2.0 Phosphate acyltransferase compare
PP_4628 +0.4 1.8 conserved protein of unknown function compare
PP_4375 +0.4 2.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_0865 +0.4 1.8 ECF subfamily RNA polymerase sigma-24 factor compare
PP_2390 +0.4 1.9 Transcriptional regulator, LysR family compare
PP_2718 +0.4 1.2 arsenic resistance transcriptional regulator compare
PP_3578 +0.4 2.6 phosphoglucomutase compare
PP_0395 +0.4 2.8 putative type IV piliation protein compare
PP_5610 +0.4 1.0 protein of unknown function compare
PP_4369 +0.4 2.8 Flagellar M-ring protein compare
PP_2360 +0.4 1.0 putative type 1 pili subunit CsuA/B protein compare
PP_0524 +0.4 1.8 putative Periplasmic cobalamin-binding protein HutB compare
PP_2637 +0.4 1.7 endo-1,4-D-glucanase subunit of cellulose synthase compare
PP_0968 +0.4 2.3 conserved protein of unknown function compare
PP_1917 +0.4 1.8 4-amino-4-deoxychorismate lyase compare
PP_2400 +0.4 1.3 conserved protein of unknown function compare
PP_2898 +0.4 1.5 conserved exported protein of unknown function compare
PP_0661 +0.4 2.0 putative Transcriptional regulator AmpR compare
PP_0241 +0.4 1.1 Transporter compare
PP_1845 +0.4 1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_5231 +0.4 1.6 putative (S)-2-haloacid dehalogenase compare
PP_1236 +0.4 1.6 putative Glycine cleavage system transcriptional repressor compare
PP_4556 +0.4 0.6 conserved protein of unknown function compare
PP_2729 +0.4 1.5 conserved protein of unknown function compare
PP_1300 +0.4 1.2 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0128 +0.3 2.1 conserved protein of unknown function compare
PP_0971 +0.3 2.3 conserved protein of unknown function compare
PP_4391 +0.3 2.0 flagellar basal-body rod protein FlgB compare
PP_4030 +0.3 1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5053 +0.3 1.8 Protein-export protein SecB compare
PP_4390 +0.3 2.5 flagellar basal-body rod protein FlgC compare
PP_3906 +0.3 1.3 conserved protein of unknown function compare
PP_1038 +0.3 1.1 conserved protein of unknown function compare
PP_0945 +0.3 1.3 conserved protein of unknown function compare
PP_2458 +0.3 2.2 ribokinase compare
PP_5304 +0.3 2.1 putative Lipoprotein compare
PP_4344 +0.3 2.7 flagellar export pore protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Fructose in Pseudomonas putida KT2440

For carbon source D-Fructose across organisms