Experiment set29IT054 for Pseudomonas putida KT2440

Compare to:

Sodium gluconate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.4 -4.4 Indole-3-glycerol phosphate synthase compare
PP_4364 -6.3 -4.3 putative Anti-sigma F factor antagonist compare
PP_4679 -6.0 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.9 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -5.7 -9.5 Argininosuccinate synthase compare
PP_0290 -5.7 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -5.7 -20.1 Carbamoyl-phosphate synthase large chain compare
PP_4909 -5.6 -5.4 phosphoserine phosphatase compare
PP_5346 -5.6 -8.5 pyruvate carboxylase subunit B compare
PP_5347 -5.5 -7.6 pyruvate carboxylase subunit A compare
PP_1985 -5.5 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_2168 -5.5 -6.5 Transaldolase compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_0417 -5.4 -16.0 Anthranilate synthase component 1 compare
PP_4680 -5.4 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -5.4 -11.5 3-isopropylmalate dehydrogenase compare
PP_0967 -5.4 -10.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -5.3 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -5.2 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -5.2 -3.6 Argininosuccinate lyase compare
PP_0691 -5.2 -6.1 Glutamate 5-kinase compare
PP_4678 -5.2 -14.5 Ketol-acid reductoisomerase compare
PP_0787 -5.2 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5348 -5.1 -9.9 Transcriptional regulator, LysR family compare
PP_4724 -5.1 -9.7 Carbamoyl-phosphate synthase small chain compare
PP_0339 -5.0 -3.5 Pyruvate dehydrogenase E1 component compare
PP_4782 -4.8 -4.7 Phosphomethylpyrimidine kinase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_1231 -4.6 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -4.6 -4.4 Ornithine carbamoyltransferase compare
PP_5015 -4.6 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0966 -4.5 -11.7 Histidinol dehydrogenase compare
PP_3511 -4.5 -10.1 Branched-chain-amino-acid aminotransferase compare
PP_4890 -4.5 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -4.3 -8.7 Dihydroxy-acid dehydratase compare
PP_2371 -4.3 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -4.3 -14.3 O-succinylhomoserine sulfhydrylase compare
PP_5303 -4.2 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_0421 -4.1 -9.5 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.1 -10.5 methionine biosynthesis protein MetW compare
PP_0292 -4.0 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_5095 -3.8 -3.7 pyrroline-5-carboxylate reductase compare
PP_5097 -3.8 -14.3 homoserine O-acetyltransferase compare
PP_0965 -3.7 -12.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -3.7 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -3.5 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5104 -3.5 -9.1 thiazole synthase compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1233 -3.4 -4.7 sulfurtransferase compare
PP_0420 -3.3 -9.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4696 -3.3 -3.9 Nitrogen regulation protein NR(I) compare
PP_2328 -3.2 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_0065 -3.2 -3.1 NAD-binding component of TrK potassium transporter compare
PP_4700 -3.1 -5.1 pantothenate synthetase compare
PP_1468 -3.1 -2.1 Tyrosine recombinase XerD compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -3.0 -8.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0362 -2.7 -12.2 Biotin synthase compare
PP_2370 -2.7 -5.4 conserved protein of unknown function compare
PP_5155 -2.6 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3376 -2.5 -5.4 putative phosphonate dehydrogenase compare
PP_4922 -2.5 -11.6 Phosphomethylpyrimidine synthase compare
PP_1826 -2.5 -3.3 Hydrolase, isochorismatase family compare
PP_4999 -2.5 -2.9 dihydroorotase-like protein compare
PP_4874 -2.4 -1.6 50S ribosomal protein L9 compare
PP_1025 -2.3 -7.1 2-isopropylmalate synthase compare
PP_1022 -2.2 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_3417 -2.2 -5.9 D-gluconate transporter compare
PP_1664 -2.2 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0366 -2.2 -7.1 dethiobiotin synthetase compare
PP_3484 -2.0 -3.9 Response regulator receiver protein compare
PP_4984 -2.0 -10.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1110 -1.9 -5.6 serine acetyltransferase compare
PP_5322 -1.9 -6.1 putative metal ion transporter compare
PP_1348 -1.9 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1362 -1.8 -3.0 pyruvate kinase II compare
PP_1109 -1.8 -11.7 Transcriptional regulator, GntR family compare
PP_4789 -1.8 -4.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2433 -1.8 -3.0 conserved protein of unknown function compare
PP_0833 -1.8 -3.4 queuine tRNA-ribosyltransferase compare
PP_0164 -1.7 -7.1 conserved protein of unknown function compare
PP_0363 -1.7 -10.8 8-amino-7-oxononanoate synthase compare
PP_4695 -1.7 -7.2 Sensory box histidine kinase compare
PP_3790 -1.7 -7.6 diaminopimelate epimerase compare
PP_1111 -1.7 -6.3 putative Synthetase compare
PP_1096 -1.6 -2.3 putative electron transport complex protein compare
PP_0365 -1.6 -8.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2302 -1.5 -3.2 DNA-binding, ATP-dependent protease compare
PP_1553 -1.5 -2.4 conserved protein of unknown function compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2999 -1.5 -1.6 Glyoxalase family protein compare
PP_0593 -1.5 -1.5 putative ribosome-binding factor compare
PP_2414 -1.4 -1.4 conserved exported protein of unknown function compare
PP_4828 -1.4 -1.2 Precorrin-8X methylmutase compare
PP_2322 -1.4 -8.4 Major outer membrane lipoprotein compare
PP_0364 -1.4 -6.2 pimeloyl-[acp] methyl ester esterase compare
PP_4387 -1.4 -2.8 conserved exported protein of unknown function compare
PP_5350 -1.4 -3.9 Transcriptional regulator, RpiR family compare
PP_4699 -1.4 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0025 -1.4 -1.2 hypothetical protein compare
PP_5453 -1.4 -1.9 conserved protein of unknown function compare
PP_4720 -1.4 -1.8 putative RNA binding protein compare
PP_2345 -1.4 -3.1 conserved exported protein of unknown function compare
PP_4561 -1.3 -1.3 stress response protein compare
PP_5701 -1.3 -1.5 conserved protein of unknown function compare
PP_4131 -1.3 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_2899 -1.2 -1.7 conserved exported protein of unknown function compare
PP_3377 -1.2 -7.2 2-ketogluconate transporter, putative compare
PP_0291 -1.2 -1.6 conserved protein of unknown function compare
PP_2306 -1.2 -1.7 conserved exported protein of unknown function compare
PP_1426 -1.2 -7.5 L-aspartate oxidase compare
PP_4124 -1.2 -1.1 NADH-quinone oxidoreductase subunit G compare
PP_0435 -1.2 -9.1 Peptidase, M23/M37 family compare
PP_4271 -1.2 -0.7 conserved protein of unknown function compare
PP_3505 -1.2 -2.5 conserved protein of unknown function compare
PP_3105 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_1048 -1.1 -2.2 putative protein secretion protein for export compare
PP_3286 -1.1 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5279 -1.1 -2.5 conserved protein of unknown function compare
PP_4058 -1.1 -6.5 1,4-alpha-glucan branching enzyme compare
PP_4130 -1.1 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2337 -1.1 -1.7 aconitate isomerase compare
PP_4961 -1.1 -1.7 putative Lipoprotein compare
PP_5054 -1.1 -1.6 glutaredoxin 3 compare
PP_0150 -1.0 -2.3 conserved exported protein of unknown function compare
PP_0949 -1.0 -3.6 putative ATP-binding protein UPF0042 compare
PP_0319 -1.0 -1.5 conserved protein of unknown function compare
PP_4004 -1.0 -1.7 DNA translocase FtsK compare
PP_5227 -1.0 -5.1 diaminopimelate decarboxylase compare
PP_1054 -1.0 -1.8 Type II secretion pathway protein XcpZ compare
PP_0246 -1.0 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_1799 -1.0 -7.2 GDP-mannose 4,6-dehydratase compare
PP_1654 -1.0 -2.3 cysteine synthase B compare
PP_3384 -1.0 -3.7 gluconate 2-dehydrogenase gamma subunit compare
PP_0848 -1.0 -1.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3519 -0.9 -0.8 putative Lipoprotein compare
PP_5027 -0.9 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1776 -0.9 -7.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1020 -0.9 -2.4 putative glucose-6-phosphate 1-epimerase compare
PP_2324 -0.9 -4.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4008 -0.9 -4.1 ATP-dependent serine protease compare
PP_4917 -0.9 -2.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4797 -0.9 -1.4 conserved protein of unknown function compare
PP_1987 -0.9 -1.7 Methlytransferase, UbiE/COQ5 family compare
PP_4507 -0.9 -5.6 potassium transporter compare
PP_4122 -0.9 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2000 -0.9 -1.1 amidophosphoribosyl transferase compare
PP_3392 -0.9 -1.4 conserved protein of unknown function compare
PP_3378 -0.9 -1.1 putative 2-ketogluconokinase compare
PP_4591 -0.9 -2.9 Ribonuclease D compare
PP_3398 -0.9 -1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2378 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
PP_0801 -0.9 -1.0 conserved exported protein of unknown function compare
PP_3447 -0.9 -0.9 conserved membrane protein of unknown function compare
PP_2030 -0.9 -2.4 conserved protein of unknown function compare
PP_1780 -0.8 -7.1 putative mannosyltransferase compare
PP_4480 -0.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_2390 -0.8 -4.3 Transcriptional regulator, LysR family compare
PP_2820 -0.8 -2.6 HTH-type transcriptional regulator nfxB compare
PP_2323 -0.8 -5.1 conserved protein of unknown function compare
PP_2348 -0.8 -3.5 Sensor histidine kinase compare
PP_4120 -0.8 -1.4 NADH-quinone oxidoreductase subunit B compare
PP_1198 -0.8 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4129 -0.8 -1.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1454 -0.8 -1.8 conserved protein of unknown function compare
PP_5648 -0.8 -1.5 conserved exported protein of unknown function compare
PP_5528 -0.8 -1.3 conserved protein of unknown function compare
PP_5225 -0.8 -1.1 frataxin compare
PP_1347 -0.8 -2.7 Glutathione S-transferase family protein compare
PP_1697 -0.8 -1.8 transcriptional regulator, GntR family compare
PP_2090 -0.8 -1.5 Uroporphyrinogen-III C-methyltransferase compare
PP_2615 -0.8 -1.3 hemolysin-coregulated protein compare
PP_5538 -0.8 -3.5 putative ABC transporter, substrate-binding protein compare
PP_1269 -0.8 -0.9 Universal stress protein family compare
PP_4938 -0.8 -3.9 putative Glycosyl transferase compare
PP_2929 -0.8 -5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1303 -0.8 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_3102 -0.8 -2.4 conserved protein of unknown function compare
PP_1912 -0.8 -2.3 Phosphate acyltransferase compare
PP_2016 -0.7 -1.6 conserved protein of unknown function compare
PP_4296 -0.7 -1.1 conserved exported protein of unknown function compare
PP_2633 -0.7 -1.2 conserved protein of unknown function compare
PP_5114 -0.7 -0.8 putative adenine methyltransferase compare
PP_5216 -0.7 -1.1 exopolyphosphatase compare
PP_2110 -0.7 -1.8 putative ribosomal large subunit pseudouridine synthase compare
PP_0566 -0.7 -0.8 translation-related factor compare
PP_1801 -0.7 -4.5 Glycosyl transferase WbpY compare
PP_5329 -0.7 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0585 -0.7 -2.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2320 -0.7 -5.7 conserved exported protein of unknown function compare
PP_2319 -0.7 -2.6 conserved protein of unknown function compare
PP_0888 -0.7 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1802 -0.7 -5.7 glycosyl transferase compare
PP_3245 -0.7 -1.0 conserved protein of unknown function compare
PP_5575 -0.7 -1.3 conserved protein of unknown function compare
PP_1778 -0.7 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1009 -0.7 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1598 -0.7 -3.6 regulatory intramembrane protein RIP zinc protease compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium gluconate in Pseudomonas putida KT2440

For carbon source Sodium gluconate across organisms