Experiment set29IT053 for Pseudomonas putida KT2440

Compare to:

Sodium gluconate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.6 -20.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.6 -11.0 Carbamoyl-phosphate synthase small chain compare
PP_0691 -6.5 -6.3 Glutamate 5-kinase compare
PP_0967 -5.9 -8.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -5.9 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -5.8 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -5.8 -9.7 3-isopropylmalate dehydrogenase compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5015 -5.7 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -5.6 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.6 -12.1 Ketol-acid reductoisomerase compare
PP_5185 -5.6 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -5.5 -7.6 Branched-chain-amino-acid aminotransferase compare
PP_4909 -5.5 -5.4 phosphoserine phosphatase compare
PP_1995 -5.5 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -5.4 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_4890 -5.4 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -5.3 -16.5 Anthranilate synthase component 1 compare
PP_0422 -5.3 -5.1 Indole-3-glycerol phosphate synthase compare
PP_5348 -5.3 -9.5 Transcriptional regulator, LysR family compare
PP_5347 -5.2 -8.6 pyruvate carboxylase subunit A compare
PP_0184 -5.1 -3.5 Argininosuccinate lyase compare
PP_1088 -5.1 -10.9 Argininosuccinate synthase compare
PP_1231 -5.1 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -5.1 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -5.0 -9.1 pyruvate carboxylase subunit B compare
PP_2168 -5.0 -8.9 Transaldolase compare
PP_4700 -4.8 -3.3 pantothenate synthetase compare
PP_0421 -4.8 -8.0 Anthranilate phosphoribosyltransferase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_0966 -4.7 -11.0 Histidinol dehydrogenase compare
PP_0965 -4.7 -13.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -4.7 -4.5 Acetylglutamate kinase compare
PP_4364 -4.6 -5.4 putative Anti-sigma F factor antagonist compare
PP_1079 -4.5 -4.4 Ornithine carbamoyltransferase compare
PP_0339 -4.4 -4.3 Pyruvate dehydrogenase E1 component compare
PP_5128 -4.3 -8.0 Dihydroxy-acid dehydratase compare
PP_2371 -4.3 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5104 -4.2 -8.9 thiazole synthase compare
PP_5097 -4.1 -14.2 homoserine O-acetyltransferase compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_5303 -4.1 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5098 -4.0 -10.4 methionine biosynthesis protein MetW compare
PP_1233 -3.9 -4.6 sulfurtransferase compare
PP_0420 -3.8 -10.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5095 -3.8 -3.6 pyrroline-5-carboxylate reductase compare
PP_0083 -3.7 -3.6 tryptophan synthase beta chain compare
PP_0289 -3.6 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_3105 -3.5 -3.3 conserved membrane protein of unknown function compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2001 -3.5 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_4782 -3.4 -5.2 Phosphomethylpyrimidine kinase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2370 -3.4 -3.9 conserved protein of unknown function compare
PP_4922 -3.3 -14.0 Phosphomethylpyrimidine synthase compare
PP_4696 -3.3 -3.2 Nitrogen regulation protein NR(I) compare
PP_0362 -3.3 -12.1 Biotin synthase compare
PP_5155 -3.2 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3376 -3.2 -7.4 putative phosphonate dehydrogenase compare
PP_3999 -3.2 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0735 -3.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_2327 -3.0 -9.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1986 -2.8 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_1025 -2.8 -9.2 2-isopropylmalate synthase compare
PP_3398 -2.5 -2.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3417 -2.3 -5.7 D-gluconate transporter compare
PP_4874 -2.3 -1.6 50S ribosomal protein L9 compare
PP_3790 -2.3 -8.5 diaminopimelate epimerase compare
PP_0366 -2.3 -9.4 dethiobiotin synthetase compare
PP_1348 -2.3 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1022 -2.3 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_1362 -2.2 -2.6 pyruvate kinase II compare
PP_2328 -2.2 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_3484 -2.2 -3.7 Response regulator receiver protein compare
PP_1110 -2.2 -7.2 serine acetyltransferase compare
PP_0164 -2.1 -8.9 conserved protein of unknown function compare
PP_0364 -2.1 -9.5 pimeloyl-[acp] methyl ester esterase compare
PP_1664 -2.0 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_3926 -2.0 -1.6 short-chain dehydrogenase compare
PP_1109 -2.0 -12.5 Transcriptional regulator, GntR family compare
PP_5322 -2.0 -5.8 putative metal ion transporter compare
PP_4984 -2.0 -9.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0363 -1.9 -11.1 8-amino-7-oxononanoate synthase compare
PP_4902 -1.9 -2.2 Oligoribonuclease compare
PP_3378 -1.9 -2.6 putative 2-ketogluconokinase compare
PP_0365 -1.8 -8.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3580 -1.8 -2.4 conserved protein of unknown function compare
PP_0001 -1.8 -1.7 probable chromosome-partitioning protein compare
PP_4695 -1.8 -6.7 Sensory box histidine kinase compare
PP_1111 -1.7 -7.1 putative Synthetase compare
PP_1493 -1.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3880 -1.7 -1.3 conserved exported protein of unknown function compare
PP_1468 -1.7 -1.6 Tyrosine recombinase XerD compare
PP_3377 -1.6 -10.8 2-ketogluconate transporter, putative compare
PP_1054 -1.6 -1.2 Type II secretion pathway protein XcpZ compare
PP_2302 -1.6 -3.2 DNA-binding, ATP-dependent protease compare
PP_2414 -1.5 -1.6 conserved exported protein of unknown function compare
PP_4058 -1.5 -7.9 1,4-alpha-glucan branching enzyme compare
PP_1426 -1.5 -8.6 L-aspartate oxidase compare
PP_5350 -1.4 -3.6 Transcriptional regulator, RpiR family compare
PP_0291 -1.4 -1.7 conserved protein of unknown function compare
PP_4895 -1.4 -2.7 tRNA dimethylallyltransferase compare
PP_2000 -1.4 -1.0 amidophosphoribosyl transferase compare
PP_3245 -1.4 -1.7 conserved protein of unknown function compare
PP_0065 -1.4 -3.2 NAD-binding component of TrK potassium transporter compare
PP_0888 -1.3 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_4593 -1.3 -1.7 conserved protein of unknown function compare
PP_5216 -1.3 -4.3 exopolyphosphatase compare
PP_3411 -1.3 -1.8 conserved protein of unknown function compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4940 -1.3 -4.8 Putative glycosyltransferase compare
PP_4122 -1.3 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1912 -1.2 -3.8 Phosphate acyltransferase compare
PP_0886 -1.2 -3.2 conserved exported protein of unknown function compare
PP_5279 -1.2 -2.6 conserved protein of unknown function compare
PP_5748 -1.2 -1.8 cytochrome c heme lyase subunit compare
PP_4124 -1.2 -1.1 NADH-quinone oxidoreductase subunit G compare
PP_1552 -1.2 -3.4 putative Phage replication protein compare
PP_4699 -1.1 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2388 -1.1 -3.3 Transporter, LysE family compare
PP_0435 -1.1 -8.4 Peptidase, M23/M37 family compare
PP_4131 -1.1 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_4964 -1.1 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_2322 -1.1 -7.0 Major outer membrane lipoprotein compare
PP_5000 -1.1 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_5054 -1.1 -1.4 glutaredoxin 3 compare
PP_4546 -1.1 -2.8 ATP-dependent helicase HrpA compare
PP_4917 -1.1 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0775 -1.1 -1.4 conserved protein of unknown function compare
PP_4789 -1.1 -2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5028 -1.0 -2.1 proline iminopeptidase compare
PP_4507 -1.0 -6.2 potassium transporter compare
PP_0195 -1.0 -1.4 conserved protein of unknown function compare
PP_4120 -1.0 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_5202 -1.0 -2.0 putative cell division protein compare
PP_5227 -1.0 -4.8 diaminopimelate decarboxylase compare
PP_5575 -1.0 -1.2 conserved protein of unknown function compare
PP_2337 -1.0 -1.6 aconitate isomerase compare
PP_4504 -1.0 -0.5 conserved exported protein of unknown function compare
PP_1826 -0.9 -1.7 Hydrolase, isochorismatase family compare
PP_2132 -0.9 -2.4 Universal stress protein compare
PP_5453 -0.9 -1.3 conserved protein of unknown function compare
PP_1800 -0.9 -5.4 Oxidoreductase Rmd compare
PP_2929 -0.9 -6.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3243 -0.9 -2.4 Acetyltransferase, GNAT family compare
PP_1702 -0.9 -2.5 Recombination-associated protein RdgC compare
PP_0025 -0.9 -0.9 hypothetical protein compare
PP_3776 -0.9 -5.1 putative permease (RarD protein) compare
PP_1176 -0.9 -2.3 conserved protein of unknown function compare
PP_1269 -0.9 -0.9 Universal stress protein family compare
PP_2441 -0.9 -1.8 conserved protein of unknown function compare
PP_5628 -0.9 -1.5 conserved protein of unknown function compare
PP_2740 -0.9 -1.4 Transcriptional regulator, MerR family compare
PP_1824 -0.9 -1.1 Smr domain protein compare
PP_1801 -0.9 -5.5 Glycosyl transferase WbpY compare
PP_1799 -0.9 -6.3 GDP-mannose 4,6-dehydratase compare
PP_3110 -0.9 -2.1 protein of unknown function compare
PP_4130 -0.9 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1009 -0.9 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_2378 -0.8 -1.6 Fe/S biogenesis protein NfuA compare
PP_5644 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_1778 -0.8 -3.3 Lipopolysaccharide ABC export system, permease protein compare
PP_5352 -0.8 -5.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1041 -0.8 -1.2 twin arginine protein export complex subunit compare
PP_1780 -0.8 -6.7 putative mannosyltransferase compare
PP_2324 -0.8 -5.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1589 -0.8 -4.4 uridylyltransferase compare
PP_1048 -0.8 -0.9 putative protein secretion protein for export compare
PP_0593 -0.8 -0.9 putative ribosome-binding factor compare
PP_3789 -0.8 -3.8 putative Efflux transporter compare
PP_0616 -0.8 -2.9 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_4993 -0.8 -2.2 Glutathione synthetase compare
PP_3380 -0.8 -1.8 2-ketogluconate utilization repressor compare
PP_2280 -0.8 -1.0 conserved protein of unknown function compare
PP_0585 -0.8 -2.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_5090 -0.8 -1.9 putative cell division protein compare
PP_2972 -0.8 -1.3 conserved protein of unknown function compare
PP_4004 -0.8 -1.4 DNA translocase FtsK compare
PP_2323 -0.7 -4.7 conserved protein of unknown function compare
PP_4938 -0.7 -4.0 putative Glycosyl transferase compare
PP_2402 -0.7 -1.6 putative Sensor histidine kinase compare
PP_5674 -0.7 -1.6 conserved protein of unknown function compare
PP_0949 -0.7 -2.8 putative ATP-binding protein UPF0042 compare
PP_3447 -0.7 -0.8 conserved membrane protein of unknown function compare
PP_0978 -0.7 -1.1 conserved protein of unknown function compare
PP_1654 -0.7 -1.7 cysteine synthase B compare
PP_0063 -0.7 -1.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2348 -0.7 -3.8 Sensor histidine kinase compare
PP_0117 -0.7 -3.5 Zn(2+) ABC transporter - permease subunit compare
PP_2214 -0.7 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1303 -0.7 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_2122 -0.7 -2.4 molybdenum cofactor biosynthesis protein B compare
PP_1776 -0.7 -5.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5313 -0.7 -1.3 DNA-binding protein HU-alpha compare
PP_0003 -0.7 -2.2 16S RNA methyltransferase compare
PP_0848 -0.7 -1.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0833 -0.7 -1.6 queuine tRNA-ribosyltransferase compare
PP_4936 -0.7 -3.3 O-antigen polymerase compare
PP_3244 -0.7 -2.2 Magnesium transporter, MgtC family compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium gluconate in Pseudomonas putida KT2440

For carbon source Sodium gluconate across organisms