Experiment set29IT053 for Pseudomonas putida KT2440

Compare to:

Sodium gluconate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_3415 +1.8 13.5 Transcriptional regulator, LacI family compare
PP_1783 +1.2 1.9 dTDP-glucose pyrophosphorylase compare
PP_3916 +1.1 5.1 conserved protein of unknown function compare
PP_3043 +1.1 2.8 conserved protein of unknown function compare
PP_2889 +1.1 7.4 putative Transmembrane regulator PrtR compare
PP_5705 +0.9 1.3 protein of unknown function compare
PP_4373 +0.9 6.5 Transcriptional regulator FleQ compare
PP_3899 +0.9 1.7 conserved protein of unknown function, hicB family compare
PP_2682 +0.9 4.4 Fe-containing alcohol dehydrogenase compare
PP_5717 +0.8 1.6 conserved protein of unknown function compare
PP_4171 +0.8 7.3 conserved exported protein of unknown function compare
PP_4682 +0.8 2.9 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_0643 +0.8 1.6 protein of unknown function compare
PP_1655 +0.8 4.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1113 +0.8 5.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0711 +0.8 2.6 putative hydrolase compare
PP_3312 +0.8 1.1 putative Heat shock protein compare
PP_1428 +0.8 2.4 Sigma factor AlgU negative regulatory protein compare
PP_1097 +0.8 1.9 Methionine--tRNA ligase compare
PP_2269 +0.7 3.0 putative N-acetylmuramoyl-L-alanine amidase compare
PP_t12 +0.7 1.0 tRNA-Thr compare
PP_5027 +0.7 1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2666 +0.7 4.2 conserved exported protein of unknown function compare
PP_5248 +0.7 0.7 putative hydrolase compare
PP_1892 +0.7 2.1 conserved protein of unknown function compare
PP_0276 +0.7 1.3 Transcriptional regulator, Cro/CI family compare
PP_5167 +0.7 2.2 conserved hypothetical protein compare
PP_2074 +0.7 2.2 Transcriptional regulator, LysR family compare
PP_5232 +0.7 1.4 conserved protein of unknown function compare
PP_2793 +0.7 1.4 Acyl-CoA dehydrogenase family protein compare
PP_3625 +0.7 2.3 Transporter, LysE family compare
PP_4227 +0.6 1.5 conserved protein of unknown function compare
PP_3487 +0.6 1.3 conserved exported protein of unknown function compare
PP_3052 +0.6 1.0 conserved protein of unknown function compare
PP_0125 +0.6 2.0 putative cytochrome c-type protein compare
PP_2773 +0.6 0.9 conserved protein of unknown function compare
PP_2459 +0.6 1.3 ribose pyranase compare
PP_4396 +0.6 2.8 conserved protein of unknown function compare
PP_0182 +0.6 2.6 conserved protein of unknown function compare
PP_0135 +0.6 2.3 conserved exported protein of unknown function compare
PP_1055 +0.6 0.7 Type II secretion pathway protein GspN compare
PP_2648 +0.6 2.2 Universal stress protein family compare
PP_1903 +0.6 1.3 putative phosphotyrosine-protein phosphatase compare
PP_0109 +0.6 2.9 conserved membrane protein of unknown function compare
PP_4994 +0.6 2.9 conserved protein of unknown function compare
PP_0424 +0.6 2.3 DNA-binding transcriptional dual regulator compare
PP_4099 +0.6 4.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0627 +0.6 1.6 conserved protein of unknown function compare
PP_2665 +0.6 2.2 Glycerol metabolism activator compare
PP_5598 +0.6 1.7 conserved protein of unknown function compare
PP_1981 +0.6 2.3 tRNA-dihydrouridine synthase C compare
PP_1656 +0.5 4.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_4354 +0.5 2.0 flagellar export apparatus subunit compare
PP_3451 +0.5 2.6 conserved exported protein of unknown function compare
PP_5583 +0.5 0.7 conserved protein of unknown function compare
PP_4981 +0.5 1.3 polyisoprene-binding protein, acidic stress response factor compare
PP_1300 +0.5 2.0 putative amino acid ABC transporter - ATP-binding subunit compare
PP_1410 +0.5 0.8 conserved protein of unknown function compare
PP_2499 +0.5 0.9 conserved protein of unknown function compare
PP_2147 +0.5 2.0 conserved exported protein of unknown function compare
PP_3035 +0.5 1.0 conserved protein of unknown function compare
PP_1536 +0.5 1.2 conserved protein of unknown function compare
PP_0355 +0.5 3.4 Response regulator compare
PP_2668 +0.5 1.1 ABC efflux transporter, ATP-binding protein compare
PP_2550 +0.5 1.4 putative transcriptional regulatory protein compare
PP_5201 +0.5 1.7 conserved protein of unknown function, UPF0149 family compare
PP_0674 +0.5 3.6 ADP/ATP ratio sensor and inhibitor of translation compare
PP_5053 +0.5 2.8 Protein-export protein SecB compare
PP_1650 +0.5 4.6 Sensor protein GacS compare
PP_5058 +0.5 2.8 Carboxy-terminal-processing protease compare
PP_4561 +0.5 0.8 stress response protein compare
PP_3551 +0.5 1.3 DNA-binding response regulator, LuxR family compare
PP_0150 +0.5 1.6 conserved exported protein of unknown function compare
PP_5537 +0.5 2.0 conserved membrane protein of unknown function compare
PP_3231 +0.5 2.3 conserved protein of unknown function compare
PP_2654 +0.5 1.9 putative Glutathione S-transferase compare
PP_5502 +0.5 2.6 ribosome modulation factor compare
PP_3295 +0.5 1.2 YeeE/YedE family protein compare
PP_4372 +0.5 2.4 Sensory box histidine kinase FleS compare
PP_5561 +0.5 1.8 conserved protein of unknown function compare
PP_3434 +0.5 1.0 conserved protein of unknown function compare
PP_3480 +0.5 1.8 conserved protein of unknown function compare
PP_5239 +0.5 3.0 putative ATP-dependent chelatase compare
PP_0162 +0.5 3.2 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1692 +0.5 1.8 conserved protein of unknown function compare
PP_3339 +0.5 1.7 conserved exported protein of unknown function compare
PP_5206 +0.5 2.0 putative translation-related protein compare
PP_4419 +0.5 0.9 transposase compare
PP_3512 +0.5 1.8 conserved membrane protein of unknown function compare
PP_3519 +0.5 0.6 putative Lipoprotein compare
PP_3875 +0.5 2.1 conserved protein of unknown function compare
PP_4133 +0.5 1.2 Transcriptional regulator-related protein compare
PP_5162 +0.5 2.3 conserved exported protein of unknown function compare
PP_0923 +0.5 1.9 Acyltransferase compare
PP_4687 +0.5 1.8 Hemin import ATP-binding protein HmuV compare
PP_2716 +0.5 1.8 arsenate reductase compare
PP_5073 +0.5 1.1 conserved exported protein of unknown function compare
PP_5528 +0.5 0.8 conserved protein of unknown function compare
PP_3121 +0.4 2.0 transcriptional regulator, LysR family compare
PP_0958 +0.4 2.3 phospholipid ABC transporter ATP-binding subunit compare
PP_4942 +0.4 0.7 conserved protein of unknown function compare
PP_2387 +0.4 1.2 conserved protein of unknown function compare
PP_0632 +0.4 1.9 leader peptidase/N-methyltransferase compare
PP_3190 +0.4 1.7 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_2848 +0.4 1.3 urease accessory protein compare
PP_3831 +0.4 2.1 conserved protein of unknown function compare
PP_2330 +0.4 1.9 conserved protein of unknown function compare
PP_5547 +0.4 1.3 protein of unknown function compare
PP_3441 +0.4 2.3 conserved protein of unknown function compare
PP_5533 +0.4 0.7 conserved protein of unknown function compare
PP_5205 +0.4 2.1 conserved protein of unknown function compare
PP_2142 +0.4 1.0 Cell division inhibitor SulA compare
PP_2107 +0.4 0.9 conserved protein of unknown function compare
PP_2748 +0.4 0.9 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_1226 +0.4 2.0 pre-queuosine 0 synthase compare
PP_3702 +0.4 2.1 conserved protein of unknown function compare
PP_5145 +0.4 3.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4013 +0.4 1.7 MutT/nudix family protein compare
PP_3181 +0.4 1.6 Site-specific recombinase, phage integrase family compare
PP_4693 +0.4 1.1 RNA polymerase-binding transcription factor DksA compare
PP_4629 +0.4 2.1 Sensory box protein compare
PP_0642 +0.4 1.8 conserved membrane protein of unknown function compare
PP_2899 +0.4 0.9 conserved exported protein of unknown function compare
PP_3798 +0.4 2.1 conserved protein of unknown function compare
PP_5572 +0.4 1.5 protein of unknown function compare
PP_0137 +0.4 2.5 glutamate/aspartate-proton DAACS transporter compare
PP_1396 +0.4 1.5 conserved protein of unknown function compare
PP_0781 +0.4 1.0 conserved protein of unknown function compare
PP_2857 +0.4 0.8 conserved exported protein of unknown function compare
PP_0058 +0.4 3.6 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4045 +0.4 0.9 conserved protein of unknown function compare
PP_1071 +0.4 1.8 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_2231 +0.4 1.9 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1028 +0.4 2.0 Transcriptional regulator, LysR family compare
PP_4899 +0.4 2.4 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
PP_5363 +0.4 1.7 conserved exported protein of unknown function compare
PP_2595 +0.4 1.1 putative ABC transporter, permease/ATP-binding protein compare
PP_3332 +0.4 1.3 putative cytochrome c-type protein compare
PP_5525 +0.4 1.1 conserved exported protein of unknown function compare
PP_4361 +0.4 1.7 Flagellar hook-length control protein FliK compare
PP_5600 +0.4 1.0 conserved protein of unknown function compare
PP_2197 +0.4 1.4 conserved exported protein of unknown function compare
PP_0352 +0.4 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5395 +0.4 2.4 conserved protein of unknown function compare
PP_4836 +0.4 1.8 conserved exported protein of unknown function compare
PP_1093 +0.4 2.1 putative electron transport complex protein compare
PP_2927 +0.4 1.8 conserved protein of unknown function compare
PP_1569 +0.4 1.4 conserved protein of unknown function compare
PP_5243 +0.4 0.9 putative hydrolase compare
PP_2411 +0.4 1.8 Major facilitator family transporter compare
PP_4449 +0.4 1.1 conserved protein of unknown function compare
PP_2683 +0.4 2.5 putative sensory box histidine kinase/response regulator compare
PP_4238 +0.4 0.6 conserved protein of unknown function compare
PP_4657 +0.4 1.9 zinc metalloprotease compare
PP_4173 +0.4 2.4 Sensor histidine kinase/response regulator compare
PP_5385 +0.4 2.1 metal RND efflux outer membrane protein, CzcC family compare
PP_1862 +0.4 0.8 conserved membrane protein of unknown function compare
PP_1004 +0.4 0.5 conserved protein of unknown function compare
PP_0943 +0.4 1.8 conserved protein of unknown function compare
PP_4391 +0.4 2.0 flagellar basal-body rod protein FlgB compare
PP_3614 +0.4 1.1 conserved membrane protein of unknown function compare
PP_5358 +0.4 2.2 conserved protein of unknown function compare
PP_1451 +0.4 1.5 conserved exported protein of unknown function compare
PP_4268 +0.4 0.4 nucleoid-associated broad specificity regulator compare
PP_1921 +0.4 2.1 conserved protein of unknown function compare
PP_t49 +0.4 2.5 tRNA-Met compare
PP_5701 +0.4 0.5 conserved protein of unknown function compare
PP_0899 +0.4 2.4 putative Ferredoxin reductase compare
PP_4513 +0.4 1.8 conserved protein of unknown function compare
PP_2332 +0.4 1.8 conserved exported protein of unknown function compare
PP_0862 +0.4 2.2 PKHD-type hydroxylase PP_0862 compare
PP_3230 +0.4 2.4 Phosphoribosyl transferase domain protein compare
PP_5042 +0.4 1.6 conserved protein of unknown function compare
PP_3861 +0.4 1.5 Phage FluMu protein gp46 compare
PP_4296 +0.4 0.7 conserved exported protein of unknown function compare
PP_1261 +0.4 1.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_0166 +0.4 2.8 HlyD family secretion protein compare
PP_1096 +0.4 0.8 putative electron transport complex protein compare
PP_0960 +0.4 1.8 phospholipid ABC transporter binding protein compare
PP_4172 +0.3 2.0 conserved exported protein of unknown function compare
PP_4828 +0.3 0.3 Precorrin-8X methylmutase compare
PP_1873 +0.3 1.6 Peptide methionine sulfoxide reductase MsrB compare
PP_0574 +0.3 2.8 DNA-binding response regulator, LuxR family compare
PP_3430 +0.3 2.4 Sensory box histidine kinase/response regulator compare
PP_5076 +0.3 3.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_1417 +0.3 1.3 putative Tricarboxylate transport protein TctB compare
PP_0040 +0.3 1.4 hypothetical protein compare
PP_3610 +0.3 1.3 conserved protein of unknown function compare
PP_3640 +0.3 1.7 Transcriptional regulator, AraC family compare
PP_3902 +0.3 0.7 conserved protein of unknown function compare
PP_0244 +0.3 1.4 conserved protein of unknown function compare
PP_4365 +0.3 1.5 Flagellar protein FliJ compare
PP_1963 +0.3 1.5 conserved protein of unknown function compare
PP_3774 +0.3 1.8 conserved protein of unknown function compare
PP_4043 +0.3 1.6 putative 6-phosphogluconate dehydrogenase, decarboxylating compare
PP_1814 +0.3 1.4 conserved protein of unknown function compare
PP_0804 +0.3 1.5 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3909 +0.3 1.5 conserved protein of unknown function compare
PP_1609 +0.3 1.0 conserved protein of unknown function compare
PP_4663 +0.3 2.1 conserved transmembrane protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium gluconate in Pseudomonas putida KT2440

For carbon source Sodium gluconate across organisms