Experiment set29IT052 for Pseudomonas putida KT2440

Compare to:

Quinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -6.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_0293 -5.7 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.7 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -5.7 -10.2 3-isopropylmalate dehydrogenase compare
PP_1377 -5.5 -9.8 beta-ketoadipyl-CoA thiolase conserved
PP_4723 -5.4 -18.9 Carbamoyl-phosphate synthase large chain compare
PP_0290 -5.3 -6.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4364 -5.3 -5.2 putative Anti-sigma F factor antagonist compare
PP_0184 -5.1 -3.5 Argininosuccinate lyase compare
PP_3952 -5.0 -10.8 3-oxoadipate CoA-transferase subunit A conserved
PP_1380 -5.0 -6.8 3-oxoadipate enol-lactonase 2 conserved
PP_1088 -4.9 -11.5 Argininosuccinate synthase compare
PP_1379 -4.8 -8.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_1381 -4.8 -2.2 4-carboxymuconolactone decarboxylase compare
PP_5185 -4.7 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_3821 -4.7 -11.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_1995 -4.6 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3951 -4.5 -10.1 3-oxoadipate CoA-transferase subunit A compare
PP_4678 -4.5 -15.9 Ketol-acid reductoisomerase compare
PP_0289 -4.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.5 -7.6 Glutamate 5-kinase compare
PP_5155 -4.5 -8.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0967 -4.4 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -4.4 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_4680 -4.4 -13.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4724 -4.4 -8.8 Carbamoyl-phosphate synthase small chain compare
PP_5097 -4.3 -15.1 homoserine O-acetyltransferase compare
PP_0965 -4.2 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5128 -4.2 -7.8 Dihydroxy-acid dehydratase compare
PP_1713 -4.2 -4.5 Transcriptional regulator PcaQ compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_5098 -4.1 -10.2 methionine biosynthesis protein MetW compare
PP_2371 -4.1 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.1 -9.0 phosphoserine phosphatase compare
PP_4890 -4.0 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -4.0 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -3.8 -12.3 Histidinol dehydrogenase compare
PP_4789 -3.7 -5.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5095 -3.7 -3.6 pyrroline-5-carboxylate reductase compare
PP_5322 -3.7 -7.9 putative metal ion transporter compare
PP_0421 -3.7 -8.2 Anthranilate phosphoribosyltransferase compare
PP_1986 -3.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5015 -3.6 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -3.6 -4.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1025 -3.5 -11.2 2-isopropylmalate synthase compare
PP_2328 -3.5 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -3.4 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_1079 -3.4 -4.7 Ornithine carbamoyltransferase compare
PP_0083 -3.3 -5.5 tryptophan synthase beta chain compare
PP_0422 -3.3 -5.9 Indole-3-glycerol phosphate synthase compare
PP_4940 -3.2 -5.8 Putative glycosyltransferase compare
PP_2370 -3.2 -5.3 conserved protein of unknown function compare
PP_0735 -3.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_3999 -3.2 -6.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4938 -3.1 -9.3 putative Glycosyl transferase compare
PP_2327 -3.1 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3726 -3.1 -2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_4696 -3.0 -4.1 Nitrogen regulation protein NR(I) compare
PP_1233 -3.0 -5.0 sulfurtransferase compare
PP_4799 -3.0 -2.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4655 -3.0 -11.3 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_4700 -2.9 -5.3 pantothenate synthetase compare
PP_1231 -2.9 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1778 -2.9 -5.5 Lipopolysaccharide ABC export system, permease protein compare
PP_0291 -2.9 -4.9 conserved protein of unknown function compare
PP_4656 -2.9 -10.8 protocatechuate 3,4-dioxygenase beta chain conserved
PP_1804 -2.8 -13.2 Glycosyl transferase WbpL compare
PP_1802 -2.8 -18.2 glycosyl transferase compare
PP_0420 -2.8 -7.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1779 -2.8 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1780 -2.8 -19.6 putative mannosyltransferase compare
PP_3505 -2.8 -3.0 conserved protein of unknown function compare
PP_1805 -2.7 -17.2 Polysaccharide biosynthesis protein compare
PP_2554 -2.7 -11.3 putative 3-dehydroshikimate dehydratase conserved
PP_1800 -2.7 -12.3 Oxidoreductase Rmd compare
PP_5014 -2.6 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_1799 -2.6 -13.3 GDP-mannose 4,6-dehydratase compare
PP_5104 -2.6 -8.8 thiazole synthase compare
PP_1801 -2.6 -12.1 Glycosyl transferase WbpY compare
PP_0787 -2.6 -3.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1776 -2.6 -16.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4936 -2.5 -6.3 O-antigen polymerase compare
PP_2553 -2.5 -10.7 Major facilitator family transporter compare
PP_4943 -2.5 -2.4 putative Glycosyl transferase compare
PP_2388 -2.3 -4.3 Transporter, LysE family compare
PP_0888 -2.3 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0164 -2.3 -9.4 conserved protein of unknown function compare
PP_1375 -2.3 -10.1 transcription regulatory protein (pca regulon) compare
PP_0547 -2.3 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5331 -2.3 -5.4 Long-chain acyl-CoA thioester hydrolase compare
PP_2390 -2.2 -6.5 Transcriptional regulator, LysR family compare
PP_2406 -2.1 -6.8 putative quinate/shikimate dehydrogenase conserved
PP_4782 -2.1 -4.5 Phosphomethylpyrimidine kinase compare
PP_0246 -2.0 -2.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_2999 -2.0 -1.8 Glyoxalase family protein compare
PP_0001 -1.9 -1.8 probable chromosome-partitioning protein compare
PP_0063 -1.9 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1664 -1.9 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_4902 -1.9 -1.8 Oligoribonuclease compare
PP_4922 -1.9 -10.5 Phosphomethylpyrimidine synthase compare
PP_5075 -1.8 -9.8 glutamate synthase (NADPH) beta subunit compare
PP_1348 -1.8 -6.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1378 -1.8 -5.6 alpha-ketoglutarate permease compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_0362 -1.6 -9.6 Biotin synthase compare
PP_0127 -1.6 -5.0 Thiol:disulfide interchange protein compare
PP_1912 -1.5 -3.4 Phosphate acyltransferase compare
PP_0566 -1.5 -1.4 translation-related factor compare
PP_2433 -1.5 -2.8 conserved protein of unknown function compare
PP_2378 -1.5 -2.4 Fe/S biogenesis protein NfuA compare
PP_2337 -1.5 -2.2 aconitate isomerase compare
PP_2322 -1.5 -6.7 Major outer membrane lipoprotein compare
PP_1716 -1.5 -2.1 Transcriptional regulator, Cro/CI family compare
PP_0905 -1.5 -1.4 conserved exported protein of unknown function compare
PP_4296 -1.4 -1.0 conserved exported protein of unknown function compare
PP_1048 -1.4 -2.5 putative protein secretion protein for export compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_1426 -1.3 -8.6 L-aspartate oxidase compare
PP_2356 -1.3 -8.2 putative Phytochrome family protein compare
PP_5644 -1.3 -1.9 conserved membrane protein of unknown function compare
PP_4481 -1.3 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1303 -1.2 -5.1 Sulfate adenylyltransferase subunit 2 compare
PP_4199 -1.2 -1.6 putative Lipoprotein compare
PP_1493 -1.2 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0364 -1.2 -5.5 pimeloyl-[acp] methyl ester esterase compare
PP_0363 -1.2 -7.6 8-amino-7-oxononanoate synthase compare
PP_4964 -1.2 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2581 -1.2 -1.4 conserved protein of unknown function compare
PP_5035 -1.2 -4.7 Histidine utilization repressor compare
PP_2575 -1.2 -1.7 conserved exported protein of unknown function compare
PP_5076 -1.2 -8.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0307 -1.2 -1.6 conserved exported protein of unknown function compare
PP_0365 -1.2 -5.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2389 -1.1 -3.2 conserved protein of unknown function compare
PP_1994 -1.1 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_1217 -1.1 -1.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4196 -1.1 -1.7 conserved exported protein of unknown function compare
PP_5315 -1.1 -3.2 Rubredoxin-1 compare
PP_2000 -1.1 -1.1 amidophosphoribosyl transferase compare
PP_0435 -1.1 -9.0 Peptidase, M23/M37 family compare
PP_4917 -1.1 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0366 -1.1 -6.0 dethiobiotin synthetase compare
PP_1310 -1.1 -2.1 conserved hypothetical protein compare
PP_4695 -1.1 -6.0 Sensory box histidine kinase compare
PP_2883 -1.1 -1.7 conserved protein of unknown function compare
PP_3903 -1.1 -1.2 conserved protein of unknown function compare
PP_1304 -1.1 -6.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4984 -1.1 -6.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0065 -1.1 -2.6 NAD-binding component of TrK potassium transporter compare
PP_5495 -1.0 -2.5 protein of unknown function compare
PP_5571 -1.0 -1.5 conserved protein of unknown function compare
PP_3590 -1.0 -4.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2633 -1.0 -1.0 conserved protein of unknown function compare
PP_5227 -1.0 -4.8 diaminopimelate decarboxylase compare
PP_4939 -1.0 -2.7 conserved protein of unknown function compare
PP_4363 -1.0 -5.3 Sensor histidine kinase/response regulator compare
PP_4480 -1.0 -5.3 arginine N-succinyltransferase, subunit alpha compare
PP_3102 -1.0 -3.3 conserved protein of unknown function compare
PP_2402 -1.0 -1.9 putative Sensor histidine kinase compare
PP_1237 -1.0 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0801 -1.0 -1.1 conserved exported protein of unknown function compare
PP_3245 -1.0 -1.2 conserved protein of unknown function compare
PP_0406 -1.0 -4.4 Nucleotidyltransferase family protein compare
PP_0417 -1.0 -7.2 Anthranilate synthase component 1 compare
PP_2857 -0.9 -1.8 conserved exported protein of unknown function compare
PP_1803 -0.9 -6.2 UDP-sugar epimerase compare
PP_5448 -0.9 -1.9 conserved protein of unknown function compare
PP_0612 -0.9 -4.7 FAD-dependent glycine/D-amino acid oxidase compare
PP_3398 -0.9 -1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2320 -0.9 -7.3 conserved exported protein of unknown function compare
PP_5090 -0.9 -1.7 putative cell division protein compare
PP_2253 -0.9 -0.7 Transcriptional regulator, GntR family compare
PP_1702 -0.9 -2.0 Recombination-associated protein RdgC compare
PP_1979 -0.9 -1.9 putative Hydrolase compare
PP_t12 -0.9 -0.8 tRNA-Thr compare
PP_5654 -0.9 -1.6 putative phosphotriesterase compare
PP_4941 -0.9 -4.1 conserved exported protein of unknown function compare
PP_3926 -0.9 -0.7 short-chain dehydrogenase compare
PP_2031 -0.9 -1.4 conserved protein of unknown function compare
PP_3637 -0.9 -1.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5505 -0.9 -1.9 conserved transmembrane protein of unknown function compare
PP_2354 -0.9 -5.1 Sensory box histidine kinase/response regulator compare
PP_0927 -0.8 -6.0 aromatic amino acid transport protein compare
PP_2159 -0.8 -2.3 Copper-binding protein, plastocyanin/azurin family compare
PP_2568 -0.8 -1.2 Ring-cleaving dioxygenase compare
PP_5329 -0.8 -3.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5558 -0.8 -3.5 putative transcriptional xre family of phage origin compare
PP_1658 -0.8 -1.9 conserved protein of unknown function compare
PP_4787 -0.8 -2.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4004 -0.8 -1.4 DNA translocase FtsK compare
PP_2441 -0.8 -1.3 conserved protein of unknown function compare
PP_0850 -0.8 -3.5 Dual-specificity RNA methyltransferase RlmN compare
PP_4504 -0.8 -1.0 conserved exported protein of unknown function compare
PP_1041 -0.8 -1.4 twin arginine protein export complex subunit compare
PP_4470 -0.8 -1.9 putative transcriptional regulator (Arc domain-containing) compare
PP_5528 -0.8 -1.2 conserved protein of unknown function compare
PP_5230 -0.8 -2.2 Tyrosine recombinase XerC compare
PP_2323 -0.8 -5.2 conserved protein of unknown function compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Quinic Acid in Pseudomonas putida KT2440

For carbon source Quinic Acid across organisms