Experiment set29IT051 for Pseudomonas putida KT2440

Compare to:

Quinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1988 -6.0 -9.2 3-isopropylmalate dehydrogenase compare
PP_3821 -5.9 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1377 -5.9 -8.0 beta-ketoadipyl-CoA thiolase conserved
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0246 -5.6 -3.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_4724 -5.5 -8.6 Carbamoyl-phosphate synthase small chain compare
PP_3952 -5.5 -10.5 3-oxoadipate CoA-transferase subunit A conserved
PP_0422 -5.3 -5.2 Indole-3-glycerol phosphate synthase compare
PP_2370 -5.2 -5.1 conserved protein of unknown function compare
PP_4723 -5.2 -18.9 Carbamoyl-phosphate synthase large chain compare
PP_0967 -5.1 -10.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0292 -5.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -5.1 -3.5 Ornithine carbamoyltransferase compare
PP_1088 -5.1 -12.7 Argininosuccinate synthase compare
PP_0966 -5.1 -10.8 Histidinol dehydrogenase compare
PP_5185 -5.0 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -5.0 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0290 -4.9 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.9 -7.4 phosphoserine phosphatase compare
PP_4680 -4.9 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -4.8 -4.7 Acetylglutamate kinase compare
PP_1381 -4.8 -2.1 4-carboxymuconolactone decarboxylase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_4364 -4.7 -5.5 putative Anti-sigma F factor antagonist compare
PP_4890 -4.6 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -4.6 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_3951 -4.6 -8.5 3-oxoadipate CoA-transferase subunit A compare
PP_5098 -4.6 -10.2 methionine biosynthesis protein MetW compare
PP_5015 -4.4 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5097 -4.4 -13.2 homoserine O-acetyltransferase compare
PP_4679 -4.3 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -4.3 -5.9 3-isopropylmalate dehydratase large subunit compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_5155 -4.2 -8.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -4.1 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0691 -4.1 -7.3 Glutamate 5-kinase compare
PP_1380 -4.1 -6.3 3-oxoadipate enol-lactonase 2 conserved
PP_4678 -4.1 -17.0 Ketol-acid reductoisomerase compare
PP_5128 -4.1 -8.8 Dihydroxy-acid dehydratase compare
PP_4940 -4.0 -2.8 Putative glycosyltransferase compare
PP_0184 -4.0 -6.6 Argininosuccinate lyase compare
PP_1231 -4.0 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_5095 -3.8 -3.7 pyrroline-5-carboxylate reductase compare
PP_2001 -3.8 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_1713 -3.6 -2.4 Transcriptional regulator PcaQ compare
PP_1379 -3.6 -9.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4938 -3.5 -9.4 putative Glycosyl transferase compare
PP_0291 -3.5 -5.3 conserved protein of unknown function compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0735 -3.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_2371 -3.2 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -3.2 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0787 -3.2 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1780 -3.2 -21.0 putative mannosyltransferase compare
PP_1776 -3.2 -18.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5322 -3.1 -8.8 putative metal ion transporter compare
PP_0421 -3.1 -6.9 Anthranilate phosphoribosyltransferase compare
PP_1801 -3.1 -13.5 Glycosyl transferase WbpY compare
PP_1804 -3.1 -14.2 Glycosyl transferase WbpL compare
PP_5303 -3.0 -5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1805 -3.0 -18.9 Polysaccharide biosynthesis protein compare
PP_1025 -3.0 -10.3 2-isopropylmalate synthase compare
PP_4943 -3.0 -2.0 putative Glycosyl transferase compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -3.0 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2327 -3.0 -8.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1802 -3.0 -17.0 glycosyl transferase compare
PP_4696 -2.9 -4.4 Nitrogen regulation protein NR(I) compare
PP_4700 -2.9 -5.5 pantothenate synthetase compare
PP_1799 -2.9 -13.4 GDP-mannose 4,6-dehydratase compare
PP_2328 -2.8 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_1800 -2.8 -11.6 Oxidoreductase Rmd compare
PP_4656 -2.8 -9.9 protocatechuate 3,4-dioxygenase beta chain conserved
PP_1779 -2.8 -6.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5104 -2.8 -7.0 thiazole synthase compare
PP_1778 -2.7 -6.3 Lipopolysaccharide ABC export system, permease protein compare
PP_0164 -2.7 -9.8 conserved protein of unknown function compare
PP_0547 -2.7 -5.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4655 -2.6 -11.6 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_2554 -2.5 -8.7 putative 3-dehydroshikimate dehydratase conserved
PP_0420 -2.5 -7.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2553 -2.5 -10.4 Major facilitator family transporter compare
PP_0127 -2.4 -5.7 Thiol:disulfide interchange protein compare
PP_1375 -2.3 -12.8 transcription regulatory protein (pca regulon) compare
PP_4789 -2.3 -4.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1664 -2.3 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_2388 -2.2 -4.0 Transporter, LysE family compare
PP_4569 -2.1 -3.2 conserved protein of unknown function compare
PP_2390 -2.1 -5.7 Transcriptional regulator, LysR family compare
PP_5331 -2.1 -4.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4936 -2.1 -6.7 O-antigen polymerase compare
PP_1233 -2.0 -3.4 sulfurtransferase compare
PP_2406 -2.0 -7.1 putative quinate/shikimate dehydrogenase conserved
PP_0888 -2.0 -3.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4902 -2.0 -1.9 Oligoribonuclease compare
PP_1348 -1.9 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0362 -1.9 -11.4 Biotin synthase compare
PP_5075 -1.9 -11.0 glutamate synthase (NADPH) beta subunit compare
PP_1824 -1.9 -1.1 Smr domain protein compare
PP_2402 -1.9 -3.0 putative Sensor histidine kinase compare
PP_1186 -1.8 -2.4 two component system DNA-binding transcriptional dual regulator compare
PP_2322 -1.8 -7.2 Major outer membrane lipoprotein compare
PP_4917 -1.8 -4.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4922 -1.8 -11.3 Phosphomethylpyrimidine synthase compare
PP_4701 -1.8 -1.3 glucose-6-phosphate isomerase compare
PP_4782 -1.7 -3.0 Phosphomethylpyrimidine kinase compare
PP_1378 -1.6 -5.1 alpha-ketoglutarate permease compare
PP_1679 -1.6 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5313 -1.6 -2.4 DNA-binding protein HU-alpha compare
PP_2121 -1.6 -3.4 putative Lipoprotein compare
PP_4004 -1.5 -2.1 DNA translocase FtsK compare
PP_5701 -1.5 -1.5 conserved protein of unknown function compare
PP_1826 -1.5 -2.5 Hydrolase, isochorismatase family compare
PP_2302 -1.5 -3.1 DNA-binding, ATP-dependent protease compare
PP_1237 -1.5 -3.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3398 -1.4 -2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5076 -1.4 -10.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_3505 -1.4 -2.8 conserved protein of unknown function compare
PP_2000 -1.4 -0.9 amidophosphoribosyl transferase compare
PP_1426 -1.4 -8.6 L-aspartate oxidase compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_0365 -1.3 -7.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1454 -1.3 -2.0 conserved protein of unknown function compare
PP_4126 -1.3 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_2499 -1.3 -1.1 conserved protein of unknown function compare
PP_4984 -1.3 -8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0435 -1.3 -9.8 Peptidase, M23/M37 family compare
PP_4964 -1.2 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_5090 -1.2 -2.2 putative cell division protein compare
PP_4481 -1.2 -4.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1493 -1.2 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4271 -1.2 -0.7 conserved protein of unknown function compare
PP_2356 -1.2 -7.3 putative Phytochrome family protein compare
PP_0363 -1.2 -7.3 8-amino-7-oxononanoate synthase compare
PP_0366 -1.2 -4.7 dethiobiotin synthetase compare
PP_2320 -1.2 -7.3 conserved exported protein of unknown function compare
PP_0593 -1.2 -1.2 putative ribosome-binding factor compare
PP_0417 -1.2 -8.5 Anthranilate synthase component 1 compare
PP_1912 -1.1 -3.0 Phosphate acyltransferase compare
PP_2323 -1.1 -5.7 conserved protein of unknown function compare
PP_0065 -1.1 -2.7 NAD-binding component of TrK potassium transporter compare
PP_0364 -1.1 -5.0 pimeloyl-[acp] methyl ester esterase compare
PP_3098 -1.1 -1.1 conserved protein of unknown function compare
PP_1224 -1.1 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_5085 -1.1 -4.8 malic enzyme B compare
PP_0340 -1.1 -7.3 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4695 -1.1 -5.4 Sensory box histidine kinase compare
PP_5735 -1.0 -2.8 conserved hypothetical protein compare
PP_5575 -1.0 -1.3 conserved protein of unknown function compare
PP_0927 -1.0 -7.1 aromatic amino acid transport protein compare
PP_2354 -1.0 -5.5 Sensory box histidine kinase/response regulator compare
PP_3506 -1.0 -3.8 Magnesium chelatase, subunit ChII compare
PP_5350 -1.0 -2.9 Transcriptional regulator, RpiR family compare
PP_0694 -1.0 -2.9 conserved protein of unknown function compare
PP_5048 -1.0 -3.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5644 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_4993 -1.0 -2.7 Glutathione synthetase compare
PP_3590 -1.0 -4.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5035 -1.0 -4.1 Histidine utilization repressor compare
PP_1435 -1.0 -3.2 DNA repair protein RecO compare
PP_1314 -1.0 -4.2 putative NAD(P)-linked reductase compare
PP_4722 -1.0 -3.7 Transcription elongation factor GreA compare
PP_0833 -1.0 -1.9 queuine tRNA-ribosyltransferase compare
PP_2999 -1.0 -1.1 Glyoxalase family protein compare
PP_0872 -1.0 -6.0 Peptide chain release factor 3 compare
PP_5267 -1.0 -1.8 putative cytochrome c5 compare
PP_0566 -1.0 -1.0 translation-related factor compare
PP_4787 -1.0 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5329 -0.9 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5216 -0.9 -2.0 exopolyphosphatase compare
PP_3409 -0.9 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_5227 -0.9 -4.5 diaminopimelate decarboxylase compare
PP_0612 -0.9 -5.0 FAD-dependent glycine/D-amino acid oxidase compare
PP_1303 -0.9 -4.6 Sulfate adenylyltransferase subunit 2 compare
PP_5583 -0.9 -0.8 conserved protein of unknown function compare
PP_2345 -0.9 -2.3 conserved exported protein of unknown function compare
PP_5483 -0.9 -1.3 conserved protein of unknown function compare
PP_5000 -0.9 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_3903 -0.9 -1.2 conserved protein of unknown function compare
PP_4941 -0.9 -4.9 conserved exported protein of unknown function compare
PP_1110 -0.9 -2.4 serine acetyltransferase compare
PP_4363 -0.9 -5.1 Sensor histidine kinase/response regulator compare
PP_0035 -0.9 -2.1 putative bactoprenol-linked glycose transferase compare
PP_1623 -0.9 -4.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_0809 -0.9 -5.2 disulfide bond formation protein B compare
PP_0887 -0.9 -4.0 Sensor histidine kinase compare
PP_t64 -0.9 -3.3 tRNA-Gly compare
PP_1803 -0.9 -5.8 UDP-sugar epimerase compare
PP_1304 -0.9 -4.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3244 -0.9 -2.6 Magnesium transporter, MgtC family compare
PP_2580 -0.9 -1.6 conserved protein of unknown function compare
PP_2655 -0.9 -1.7 conserved protein of unknown function compare
PP_4830 -0.8 -2.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_4720 -0.8 -1.3 putative RNA binding protein compare
PP_2503 -0.8 -2.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_0679 -0.8 -3.0 conserved exported protein of unknown function compare
PP_2306 -0.8 -1.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Quinic Acid in Pseudomonas putida KT2440

For carbon source Quinic Acid across organisms