Experiment set29IT048 for Pseudomonas putida KT2440

Compare to:

Ethyl decanoate and D-Glucose carbon sources

200 most important genes:

  gene name fitness t score description  
PP_1985 -5.8 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_4723 -5.7 -20.5 Carbamoyl-phosphate synthase large chain compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -5.2 -8.7 Histidinol dehydrogenase compare
PP_1988 -5.1 -9.7 3-isopropylmalate dehydrogenase compare
PP_4724 -5.0 -9.3 Carbamoyl-phosphate synthase small chain compare
PP_0292 -5.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -4.9 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0290 -4.7 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -4.5 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -4.4 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_5289 -4.4 -4.3 Acetylglutamate kinase compare
PP_4680 -4.3 -13.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -4.3 -8.2 phosphoserine phosphatase compare
PP_0967 -4.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -4.0 -15.2 Ketol-acid reductoisomerase compare
PP_4890 -4.0 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -4.0 -12.5 Argininosuccinate synthase compare
PP_4679 -4.0 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0787 -3.9 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -3.8 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -3.7 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -3.7 -3.6 tryptophan synthase alpha chain compare
PP_0083 -3.7 -2.5 tryptophan synthase beta chain compare
PP_1986 -3.6 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_0422 -3.6 -5.4 Indole-3-glycerol phosphate synthase compare
PP_0417 -3.5 -17.6 Anthranilate synthase component 1 compare
PP_0184 -3.5 -7.5 Argininosuccinate lyase compare
PP_5098 -3.4 -9.9 methionine biosynthesis protein MetW compare
PP_0965 -3.4 -12.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2370 -3.4 -5.2 conserved protein of unknown function compare
PP_5097 -3.4 -13.6 homoserine O-acetyltransferase compare
PP_4999 -3.4 -3.2 dihydroorotase-like protein compare
PP_1022 -3.3 -2.3 glucose 6-phosphate-1-dehydrogenase compare
PP_0420 -3.2 -10.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1079 -3.2 -4.3 Ornithine carbamoyltransferase compare
PP_1025 -3.1 -10.8 2-isopropylmalate synthase compare
PP_4799 -3.1 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -3.0 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -2.9 -5.0 pantothenate synthetase compare
PP_2371 -2.9 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -2.9 -6.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0691 -2.8 -7.0 Glutamate 5-kinase compare
PP_5347 -2.7 -11.1 pyruvate carboxylase subunit A compare
PP_5014 -2.7 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -2.7 -6.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5303 -2.6 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2001 -2.6 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_5128 -2.5 -6.3 Dihydroxy-acid dehydratase compare
PP_0421 -2.5 -6.2 Anthranilate phosphoribosyltransferase compare
PP_2253 -2.5 -2.3 Transcriptional regulator, GntR family compare
PP_5346 -2.2 -8.9 pyruvate carboxylase subunit B compare
PP_1912 -2.1 -5.2 Phosphate acyltransferase compare
PP_4874 -2.1 -1.4 50S ribosomal protein L9 compare
PP_5155 -2.1 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2390 -2.1 -5.9 Transcriptional regulator, LysR family compare
PP_4696 -1.9 -4.5 Nitrogen regulation protein NR(I) compare
PP_2328 -1.9 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_2307 -1.9 -1.6 conserved protein of unknown function compare
PP_3726 -1.9 -1.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_5313 -1.8 -2.1 DNA-binding protein HU-alpha compare
PP_5348 -1.8 -6.3 Transcriptional regulator, LysR family compare
PP_2168 -1.8 -7.7 Transaldolase compare
PP_4782 -1.7 -4.1 Phosphomethylpyrimidine kinase compare
PP_5095 -1.7 -2.7 pyrroline-5-carboxylate reductase compare
PP_1045 -1.7 -1.4 Type II secretion pathway protein XcpP compare
PP_2171 -1.6 -3.1 Transporter, LysE family compare
PP_0852 -1.6 -2.6 Transcriptional regulator, Cro/CI family compare
PP_2388 -1.5 -3.5 Transporter, LysE family compare
PP_0291 -1.5 -1.8 conserved protein of unknown function compare
PP_4098 -1.5 -1.4 UvrABC system protein C compare
PP_1676 -1.4 -4.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1233 -1.4 -3.0 sulfurtransferase compare
PP_0087 -1.4 -1.9 conserved exported protein of unknown function compare
PP_4364 -1.4 -2.6 putative Anti-sigma F factor antagonist compare
PP_0893 -1.4 -2.5 ThiJ/PfpI family protein compare
PP_3241 -1.3 -1.3 conserved exported protein of unknown function compare
PP_5279 -1.3 -2.6 conserved protein of unknown function compare
PP_5701 -1.3 -1.4 conserved protein of unknown function compare
PP_4555 -1.3 -2.3 conserved protein of unknown function compare
PP_0362 -1.3 -6.7 Biotin synthase compare
PP_4296 -1.3 -0.9 conserved exported protein of unknown function compare
PP_2302 -1.3 -3.0 DNA-binding, ATP-dependent protease compare
PP_1054 -1.3 -1.9 Type II secretion pathway protein XcpZ compare
PP_0627 -1.3 -2.0 conserved protein of unknown function compare
PP_4120 -1.2 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_2000 -1.2 -0.8 amidophosphoribosyl transferase compare
PP_4993 -1.2 -2.8 Glutathione synthetase compare
PP_3506 -1.2 -2.6 Magnesium chelatase, subunit ChII compare
PP_4964 -1.2 -0.8 D-erythrose 4-phosphate dehydrogenase compare
PP_5027 -1.2 -1.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2378 -1.2 -1.6 Fe/S biogenesis protein NfuA compare
PP_0833 -1.2 -2.0 queuine tRNA-ribosyltransferase compare
PP_1366 -1.2 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_2152 -1.2 -1.4 glycerophosphoryl diester phosphodiesterase compare
PP_3926 -1.1 -1.2 short-chain dehydrogenase compare
PP_1214 -1.1 -1.1 putative transcriptional regulatory protein compare
PP_0381 -1.1 -5.1 Coenzyme PQQ synthesis protein F compare
PP_0957 -1.1 -1.6 D-arabinose 5-phosphate isomerase compare
PP_3447 -1.1 -1.0 conserved membrane protein of unknown function compare
PP_5350 -1.1 -2.9 Transcriptional regulator, RpiR family compare
PP_5583 -1.1 -0.9 conserved protein of unknown function compare
PP_2745 -1.1 -1.9 Universal stress protein family compare
PP_1404 -1.1 -1.4 conserved protein of unknown function compare
PP_5295 -1.1 -1.0 conserved protein of unknown function compare
PP_1679 -1.1 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3409 -1.1 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_2999 -1.1 -1.1 Glyoxalase family protein compare
PP_0593 -1.0 -1.0 putative ribosome-binding factor compare
PP_1096 -1.0 -1.0 putative electron transport complex protein compare
PP_3522 -1.0 -1.1 conserved protein of unknown function compare
PP_2504 -1.0 -2.1 putative tautomerase K2 compare
PP_4793 -1.0 -1.5 conserved protein of unknown function compare
PP_1309 -1.0 -4.1 conserved exported protein of unknown function compare
PP_3821 -1.0 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4480 -1.0 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_1702 -1.0 -2.5 Recombination-associated protein RdgC compare
PP_0888 -1.0 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_0127 -1.0 -3.3 Thiol:disulfide interchange protein compare
PP_5533 -1.0 -1.0 conserved protein of unknown function compare
PP_3048 -0.9 -1.3 conserved protein of unknown function compare
PP_2373 -0.9 -1.0 conserved protein of unknown function compare
PP_0784 -0.9 -2.1 conserved protein of unknown function compare
PP_1681 -0.9 -5.6 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4922 -0.9 -5.8 Phosphomethylpyrimidine synthase compare
PP_1348 -0.9 -2.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4701 -0.9 -0.8 glucose-6-phosphate isomerase compare
PP_5104 -0.9 -3.3 thiazole synthase compare
PP_0364 -0.9 -4.3 pimeloyl-[acp] methyl ester esterase compare
PP_1568 -0.9 -0.8 conserved protein of unknown function compare
PP_5430 -0.9 -1.2 protein of unknown function compare
PP_0339 -0.9 -3.7 Pyruvate dehydrogenase E1 component compare
PP_4340 -0.9 -3.1 response regulator for chemotactic signal transduction compare
PP_0435 -0.9 -6.9 Peptidase, M23/M37 family compare
PP_4827 -0.9 -5.5 Precorrin-2 C(20)-methyltransferase compare
PP_1326 -0.9 -2.1 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_5000 -0.9 -0.9 peptidase component of the ATP-dependent HslVU protease compare
PP_4940 -0.9 -3.4 Putative glycosyltransferase compare
PP_4984 -0.9 -5.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1186 -0.9 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_0363 -0.9 -4.8 8-amino-7-oxononanoate synthase compare
PP_0232 -0.9 -1.3 ATP-binding taurine transporter subunit compare
PP_1440 -0.8 -3.4 tRNA (mo5U34)-methyltransferase compare
PP_2526 -0.8 -1.1 conserved membrane protein of unknown function compare
PP_1733 -0.8 -0.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_3824 -0.8 -1.8 conserved exported protein of unknown function compare
PP_5500 -0.8 -2.6 protein of unknown function compare
PP_1968 -0.8 -3.2 TetR family transcriptional regulator compare
PP_0809 -0.8 -4.7 disulfide bond formation protein B compare
PP_5487 -0.8 -1.4 conserved protein of unknown function compare
PP_4126 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4131 -0.8 -2.9 NADH-quinone oxidoreductase subunit N compare
PP_1629 -0.8 -1.7 Protein RecA compare
PP_3337 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_1654 -0.8 -1.8 cysteine synthase B compare
PP_3862 -0.8 -3.2 putative Phage assembly protein compare
PP_3507 -0.8 -4.8 Aerobic cobaltochelatase subunit CobN compare
PP_0735 -0.8 -0.7 molybdopterin-synthase adenylyltransferase compare
PP_4504 -0.8 -1.0 conserved exported protein of unknown function compare
PP_0781 -0.8 -1.7 conserved protein of unknown function compare
PP_5075 -0.8 -4.7 glutamate synthase (NADPH) beta subunit compare
PP_0775 -0.8 -1.1 conserved protein of unknown function compare
PP_0152 -0.8 -1.9 conserved exported protein of unknown function compare
PP_3766 -0.8 -1.2 Lactoylglutathione lyase compare
PP_1672 -0.8 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1237 -0.8 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2196 -0.8 -1.4 agmatinase compare
PP_3903 -0.8 -0.9 conserved protein of unknown function compare
PP_4073 -0.8 -2.2 conserved exported protein of unknown function compare
PP_0195 -0.8 -1.3 conserved protein of unknown function compare
PP_5114 -0.8 -0.7 putative adenine methyltransferase compare
PP_4481 -0.8 -3.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1346 -0.8 -2.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_4546 -0.8 -2.1 ATP-dependent helicase HrpA compare
PP_4789 -0.8 -1.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1426 -0.7 -5.3 L-aspartate oxidase compare
PP_4830 -0.7 -2.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_2217 -0.7 -1.2 enoyl-CoA hydratase compare
PP_0848 -0.7 -1.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2720 -0.7 -1.3 conserved protein of unknown function compare
PP_5223 -0.7 -1.9 regulator of nucleotide diphosphokinase compare
PP_5644 -0.7 -2.8 conserved membrane protein of unknown function compare
PP_0380 -0.7 -3.6 Coenzyme PQQ synthesis protein A compare
PP_1097 -0.7 -1.4 Methionine--tRNA ligase compare
PP_0164 -0.7 -3.8 conserved protein of unknown function compare
PP_5090 -0.7 -1.3 putative cell division protein compare
PP_5230 -0.7 -1.8 Tyrosine recombinase XerC compare
PP_5381 -0.7 -2.2 hypothetical protein compare
PP_2144 -0.7 -1.9 Transcriptional regulator, TetR family compare
PP_5640 -0.7 -2.0 conserved protein of unknown function compare
PP_2908 -0.7 -1.6 DNA-binding transcriptional repressor compare
PP_0513 -0.7 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5445 -0.7 -1.9 conserved protein of unknown function compare
PP_1293 -0.7 -0.7 molybdopterin synthase small subunit compare
PP_1829 -0.7 -1.1 Hydrolase, alpha/beta fold family compare
PP_3505 -0.7 -0.9 conserved protein of unknown function compare
PP_4301 -0.7 -1.8 Pyruvate kinase compare
PP_0035 -0.7 -1.9 putative bactoprenol-linked glycose transferase compare
PP_2857 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4130 -0.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ethyl decanoate in Pseudomonas putida KT2440

For carbon source Ethyl decanoate across organisms