Experiment set29IT047 for Pseudomonas putida KT2440

Compare to:

Ethyl decanoate and D-Glucose carbon sources

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.7 -21.1 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.7 -10.6 Carbamoyl-phosphate synthase small chain compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -5.6 -10.7 3-isopropylmalate dehydrogenase compare
PP_5185 -5.3 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -5.2 -5.7 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.0 -15.2 Ketol-acid reductoisomerase compare
PP_1079 -5.0 -3.5 Ornithine carbamoyltransferase compare
PP_0184 -4.9 -4.8 Argininosuccinate lyase compare
PP_0290 -4.9 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -4.9 -13.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -4.8 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -4.8 -11.2 Histidinol dehydrogenase compare
PP_0967 -4.8 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -4.7 -3.3 dihydroorotase-like protein compare
PP_3511 -4.7 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_5289 -4.7 -4.5 Acetylglutamate kinase compare
PP_0691 -4.6 -8.2 Glutamate 5-kinase compare
PP_4700 -4.5 -4.3 pantothenate synthetase compare
PP_1088 -4.4 -12.9 Argininosuccinate synthase compare
PP_0421 -4.4 -8.9 Anthranilate phosphoribosyltransferase compare
PP_4364 -4.2 -5.3 putative Anti-sigma F factor antagonist compare
PP_1995 -4.2 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4890 -4.1 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -4.0 -19.0 Anthranilate synthase component 1 compare
PP_5128 -4.0 -7.7 Dihydroxy-acid dehydratase compare
PP_1986 -4.0 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_0293 -3.9 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1231 -3.8 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0083 -3.8 -3.7 tryptophan synthase beta chain compare
PP_1985 -3.8 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_0289 -3.7 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -3.7 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -3.6 -9.0 phosphoserine phosphatase compare
PP_5015 -3.6 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0082 -3.6 -4.3 tryptophan synthase alpha chain compare
PP_0965 -3.6 -12.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -3.5 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -3.5 -8.9 methionine biosynthesis protein MetW compare
PP_5097 -3.4 -13.2 homoserine O-acetyltransferase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5303 -3.2 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5348 -3.1 -11.2 Transcriptional regulator, LysR family compare
PP_5347 -3.1 -11.9 pyruvate carboxylase subunit A compare
PP_3999 -3.1 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -3.1 -4.2 Nitrogen regulation protein NR(I) compare
PP_2327 -3.1 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_1022 -3.0 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4943 -3.0 -2.0 putative Glycosyl transferase compare
PP_1025 -3.0 -10.5 2-isopropylmalate synthase compare
PP_2001 -2.9 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_2328 -2.9 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_0164 -2.7 -9.3 conserved protein of unknown function compare
PP_5346 -2.7 -8.0 pyruvate carboxylase subunit B compare
PP_2371 -2.6 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_3637 -2.5 -1.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0339 -2.5 -6.6 Pyruvate dehydrogenase E1 component compare
PP_3821 -2.3 -10.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0362 -2.3 -11.5 Biotin synthase compare
PP_2388 -2.3 -4.3 Transporter, LysE family compare
PP_1233 -2.3 -4.1 sulfurtransferase compare
PP_2370 -2.2 -3.6 conserved protein of unknown function compare
PP_5104 -2.1 -7.6 thiazole synthase compare
PP_0735 -2.1 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_5155 -2.1 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1912 -2.1 -5.2 Phosphate acyltransferase compare
PP_4940 -2.0 -6.2 Putative glycosyltransferase compare
PP_0127 -2.0 -5.8 Thiol:disulfide interchange protein compare
PP_5095 -1.9 -3.2 pyrroline-5-carboxylate reductase compare
PP_1045 -1.9 -1.6 Type II secretion pathway protein XcpP compare
PP_2390 -1.8 -7.0 Transcriptional regulator, LysR family compare
PP_1426 -1.8 -10.6 L-aspartate oxidase compare
PP_4782 -1.8 -4.2 Phosphomethylpyrimidine kinase compare
PP_2152 -1.8 -2.2 glycerophosphoryl diester phosphodiesterase compare
PP_2168 -1.7 -7.6 Transaldolase compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_4004 -1.7 -2.0 DNA translocase FtsK compare
PP_1110 -1.7 -6.4 serine acetyltransferase compare
PP_1468 -1.7 -1.6 Tyrosine recombinase XerD compare
PP_4922 -1.6 -8.0 Phosphomethylpyrimidine synthase compare
PP_0366 -1.6 -5.0 dethiobiotin synthetase compare
PP_0801 -1.6 -1.4 conserved exported protein of unknown function compare
PP_0291 -1.6 -1.9 conserved protein of unknown function compare
PP_2378 -1.6 -2.1 Fe/S biogenesis protein NfuA compare
PP_0809 -1.6 -8.0 disulfide bond formation protein B compare
PP_1237 -1.5 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5090 -1.5 -2.2 putative cell division protein compare
PP_4961 -1.5 -2.1 putative Lipoprotein compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3043 -1.4 -1.9 conserved protein of unknown function compare
PP_0888 -1.4 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5644 -1.4 -3.1 conserved membrane protein of unknown function compare
PP_t12 -1.4 -1.1 tRNA-Thr compare
PP_5350 -1.3 -3.4 Transcriptional regulator, RpiR family compare
PP_5232 -1.3 -1.0 conserved protein of unknown function compare
PP_4789 -1.3 -3.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3773 -1.3 -2.5 conserved protein of unknown function compare
PP_4984 -1.3 -8.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4262 -1.3 -2.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3484 -1.3 -4.4 Response regulator receiver protein compare
PP_4699 -1.3 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1362 -1.3 -2.5 pyruvate kinase II compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1348 -1.2 -3.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4136 -1.2 -0.6 Transcriptional regulator, LuxR family compare
PP_4701 -1.2 -1.0 glucose-6-phosphate isomerase compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_1664 -1.2 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4532 -1.2 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2253 -1.1 -0.8 Transcriptional regulator, GntR family compare
PP_3790 -1.1 -5.3 diaminopimelate epimerase compare
PP_0363 -1.1 -7.3 8-amino-7-oxononanoate synthase compare
PP_0065 -1.1 -2.7 NAD-binding component of TrK potassium transporter compare
PP_4098 -1.1 -1.4 UvrABC system protein C compare
PP_3318 -1.1 -1.5 conserved protein of unknown function compare
PP_0435 -1.1 -8.2 Peptidase, M23/M37 family compare
PP_2499 -1.1 -1.1 conserved protein of unknown function compare
PP_2899 -1.1 -1.3 conserved exported protein of unknown function compare
PP_4917 -1.1 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5322 -1.1 -5.2 putative metal ion transporter compare
PP_0035 -1.0 -1.7 putative bactoprenol-linked glycose transferase compare
PP_1562 -1.0 -1.3 putative Phage terminase, small subunit compare
PP_3286 -1.0 -3.3 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4895 -1.0 -2.3 tRNA dimethylallyltransferase compare
PP_4695 -1.0 -5.5 Sensory box histidine kinase compare
PP_1109 -1.0 -5.9 Transcriptional regulator, GntR family compare
PP_0364 -1.0 -4.9 pimeloyl-[acp] methyl ester esterase compare
PP_2336 -1.0 -1.6 aconitate hydratase 1 compare
PP_4130 -1.0 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2322 -1.0 -5.1 Major outer membrane lipoprotein compare
PP_2345 -1.0 -2.1 conserved exported protein of unknown function compare
PP_4073 -1.0 -1.7 conserved exported protein of unknown function compare
PP_4830 -1.0 -3.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_1702 -1.0 -2.3 Recombination-associated protein RdgC compare
PP_2442 -1.0 -1.6 conserved protein of unknown function, DUF480 family compare
PP_5248 -1.0 -0.6 putative hydrolase compare
PP_0914 -0.9 -5.3 GGDEF domain protein compare
PP_2970 -0.9 -1.8 conserved exported protein of unknown function compare
PP_4296 -0.9 -1.3 conserved exported protein of unknown function compare
PP_3052 -0.9 -0.9 conserved protein of unknown function compare
PP_1111 -0.9 -3.8 putative Synthetase compare
PP_4793 -0.9 -2.3 conserved protein of unknown function compare
PP_5216 -0.9 -2.3 exopolyphosphatase compare
PP_0063 -0.9 -2.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4555 -0.9 -1.4 conserved protein of unknown function compare
PP_4797 -0.9 -1.4 conserved protein of unknown function compare
PP_1017 -0.9 -2.8 mannose/glucose ABC transporter, permease protein compare
PP_5495 -0.9 -2.2 protein of unknown function compare
PP_5329 -0.9 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5528 -0.9 -1.4 conserved protein of unknown function compare
PP_5328 -0.9 -3.1 putative phosphate transport system permease protein compare
PP_0820 -0.9 -3.0 GCN5-related N-acetyltransferase compare
PP_1493 -0.9 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0241 -0.8 -1.7 Transporter compare
PP_1011 -0.8 -4.4 glucokinase compare
PP_5191 -0.8 -1.5 conserved exported protein of unknown function compare
PP_1186 -0.8 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_5507 -0.8 -2.3 protein of unknown function compare
PP_2144 -0.8 -2.7 Transcriptional regulator, TetR family compare
PP_1387 -0.8 -2.6 Probable HTH-type transcriptional regulator TtgR compare
PP_1269 -0.8 -0.9 Universal stress protein family compare
PP_0775 -0.8 -0.8 conserved protein of unknown function compare
PP_2030 -0.8 -2.1 conserved protein of unknown function compare
PP_5652 -0.8 -1.1 conserved protein of unknown function, phage origin compare
PP_2000 -0.8 -1.0 amidophosphoribosyl transferase compare
PP_2302 -0.8 -2.1 DNA-binding, ATP-dependent protease compare
PP_2581 -0.8 -1.2 conserved protein of unknown function compare
PP_5225 -0.8 -1.1 frataxin compare
PP_4660 -0.8 -2.0 Transcriptional regulator, LysR family compare
PP_5441 -0.8 -2.3 protein of unknown function compare
PP_5352 -0.8 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4786 -0.8 -3.0 conserved protein of unknown function compare
PP_0393 -0.8 -0.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4470 -0.8 -2.2 putative transcriptional regulator (Arc domain-containing) compare
PP_2324 -0.8 -4.2 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2027 -0.8 -2.2 conserved exported protein of unknown function compare
PP_1454 -0.8 -1.2 conserved protein of unknown function compare
PP_0401 -0.8 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_4120 -0.8 -1.3 NADH-quinone oxidoreductase subunit B compare
PP_4131 -0.8 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_2025 -0.8 -2.0 Exonuclease SbcD compare
PP_1681 -0.7 -4.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5223 -0.7 -2.1 regulator of nucleotide diphosphokinase compare
PP_1679 -0.7 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1051 -0.7 -2.9 Type II secretion pathway protein XcpV compare
PP_5227 -0.7 -3.7 diaminopimelate decarboxylase compare
PP_1654 -0.7 -1.7 cysteine synthase B compare
PP_4827 -0.7 -5.1 Precorrin-2 C(20)-methyltransferase compare
PP_2433 -0.7 -1.5 conserved protein of unknown function compare
PP_4126 -0.7 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_3417 -0.7 -2.1 D-gluconate transporter compare
PP_4253 -0.7 -1.2 cytochrome c oxidase subunit, cbb3-type compare
PP_3409 -0.7 -1.1 putative Cobalamin biosynthesis protein cobE compare
PP_4829 -0.7 -1.6 putative precorrin-3B synthase compare
PP_0195 -0.7 -1.3 conserved protein of unknown function compare
PP_4124 -0.7 -1.1 NADH-quinone oxidoreductase subunit G compare
PP_3506 -0.7 -2.8 Magnesium chelatase, subunit ChII compare
PP_5331 -0.7 -1.9 Long-chain acyl-CoA thioester hydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Ethyl decanoate in Pseudomonas putida KT2440

For carbon source Ethyl decanoate across organisms