Experiment set29IT044 for Pseudomonas putida KT2440

Compare to:

Ethyl decanoate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -5.7 -9.6 3-isopropylmalate dehydrogenase compare
PP_5659 -5.7 -6.8 protein of unknown function compare
PP_0967 -5.7 -8.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0376 -5.7 -6.8 Coenzyme PQQ synthesis protein E compare
PP_1968 -5.5 -7.5 TetR family transcriptional regulator compare
PP_0378 -5.4 -6.4 Pyrroloquinoline-quinone synthase compare
PP_2665 -5.3 -5.2 Glycerol metabolism activator compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0356 -5.2 -7.1 malate synthase G compare
PP_1985 -5.1 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_1088 -5.1 -11.8 Argininosuccinate synthase compare
PP_0422 -5.0 -5.9 Indole-3-glycerol phosphate synthase compare
PP_4723 -5.0 -19.9 Carbamoyl-phosphate synthase large chain compare
PP_4680 -4.9 -12.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -4.8 -10.7 Histidinol dehydrogenase compare
PP_0290 -4.8 -8.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_5185 -4.8 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -4.7 -6.1 Glutamate 5-kinase compare
PP_4678 -4.7 -15.6 Ketol-acid reductoisomerase compare
PP_4724 -4.6 -11.1 Carbamoyl-phosphate synthase small chain compare
PP_4679 -4.5 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4116 -4.5 -13.5 isocitrate lyase compare
PP_0184 -4.5 -6.1 Argininosuccinate lyase compare
PP_2675 -4.4 -3.5 Cytochrome c-type protein compare
PP_1995 -4.3 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -4.3 -14.7 homoserine O-acetyltransferase compare
PP_5098 -4.3 -9.5 methionine biosynthesis protein MetW compare
PP_0289 -4.2 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0787 -4.1 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -4.1 -10.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -4.1 -19.5 Anthranilate synthase component 1 compare
PP_0377 -4.1 -2.6 coenzyme PQQ synthesis protein D compare
PP_1986 -4.1 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_4364 -4.1 -5.5 putative Anti-sigma F factor antagonist compare
PP_4909 -4.1 -9.1 phosphoserine phosphatase compare
PP_2001 -4.1 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_4890 -4.0 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0381 -4.0 -7.9 Coenzyme PQQ synthesis protein F compare
PP_3511 -4.0 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_2674 -4.0 -12.4 quinoprotein ethanol dehydrogenase compare
PP_0083 -3.8 -3.7 tryptophan synthase beta chain compare
PP_0082 -3.8 -4.5 tryptophan synthase alpha chain compare
PP_0965 -3.7 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -3.6 -6.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -3.6 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5128 -3.6 -8.0 Dihydroxy-acid dehydratase compare
PP_2137 -3.5 -5.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_4699 -3.5 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2136 -3.4 -4.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1079 -3.4 -5.2 Ornithine carbamoyltransferase compare
PP_4696 -3.4 -3.3 Nitrogen regulation protein NR(I) compare
PP_2370 -3.3 -4.3 conserved protein of unknown function compare
PP_2672 -3.3 -5.4 Transcriptional activator protein ExaE compare
PP_0735 -3.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5322 -3.2 -8.1 putative metal ion transporter compare
PP_5015 -3.2 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -3.1 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5289 -3.1 -3.5 Acetylglutamate kinase compare
PP_1025 -3.1 -10.8 2-isopropylmalate synthase compare
PP_1110 -3.0 -4.7 serine acetyltransferase compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2328 -2.9 -5.3 Phosphoadenosine phosphosulfate reductase compare
PP_2682 -2.9 -3.8 Fe-containing alcohol dehydrogenase compare
PP_4561 -2.9 -1.8 stress response protein compare
PP_4700 -2.9 -5.1 pantothenate synthetase compare
PP_0766 -2.8 -16.2 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_2671 -2.8 -9.1 Sensor histidine kinase compare
PP_0765 -2.8 -16.6 putative adhesin (DUF1302) (from data) compare
PP_0379 -2.7 -4.7 Coenzyme PQQ synthesis protein B compare
PP_0421 -2.7 -8.8 Anthranilate phosphoribosyltransferase compare
PP_1233 -2.7 -4.7 sulfurtransferase compare
PP_5095 -2.7 -3.6 pyrroline-5-carboxylate reductase compare
PP_0435 -2.6 -16.0 Peptidase, M23/M37 family compare
PP_0767 -2.5 -11.0 Transcriptional regulator, LuxR family compare
PP_2371 -2.5 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0420 -2.5 -8.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2433 -2.5 -2.7 conserved protein of unknown function compare
PP_5313 -2.4 -2.3 DNA-binding protein HU-alpha compare
PP_2868 -2.3 -7.9 Transcriptional regulator, Cro/CI family compare
PP_3821 -2.2 -9.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5748 -2.2 -2.3 cytochrome c heme lyase subunit compare
PP_1355 -2.2 -17.6 Muropeptide permease AmpG compare
PP_4143 -2.1 -4.6 conserved protein of unknown function compare
PP_2903 -2.1 -2.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0164 -2.1 -8.3 conserved protein of unknown function compare
PP_4131 -2.0 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_2145 -2.0 -7.8 beta-N-acetylglucosaminidase compare
PP_1109 -2.0 -8.3 Transcriptional regulator, GntR family compare
PP_4695 -2.0 -8.2 Sensory box histidine kinase compare
PP_4943 -1.9 -2.6 putative Glycosyl transferase compare
PP_2499 -1.9 -1.5 conserved protein of unknown function compare
PP_5114 -1.8 -1.2 putative adenine methyltransferase compare
PP_4940 -1.8 -6.8 Putative glycosyltransferase compare
PP_1912 -1.8 -4.8 Phosphate acyltransferase compare
PP_1111 -1.8 -4.8 putative Synthetase compare
PP_1729 -1.8 -1.3 conserved protein of unknown function compare
PP_4004 -1.8 -1.7 DNA translocase FtsK compare
PP_0405 -1.8 -14.1 conserved protein of unknown function compare
PP_4130 -1.8 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5085 -1.8 -7.6 malic enzyme B compare
PP_0434 -1.8 -7.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1679 -1.8 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0406 -1.7 -7.0 Nucleotidyltransferase family protein compare
PP_0291 -1.6 -2.6 conserved protein of unknown function compare
PP_4362 -1.6 -4.4 conserved protein of unknown function compare
PP_5104 -1.6 -6.7 thiazole synthase compare
PP_4782 -1.5 -3.9 Phosphomethylpyrimidine kinase compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4545 -1.4 -4.0 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_4828 -1.4 -1.2 Precorrin-8X methylmutase compare
PP_4789 -1.4 -2.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3244 -1.4 -2.9 Magnesium transporter, MgtC family compare
PP_4120 -1.4 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_4058 -1.3 -7.5 1,4-alpha-glucan branching enzyme compare
PP_1224 -1.3 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_2132 -1.3 -3.4 Universal stress protein compare
PP_4922 -1.3 -7.5 Phosphomethylpyrimidine synthase compare
PP_4126 -1.3 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4124 -1.3 -0.9 NADH-quinone oxidoreductase subunit G compare
PP_3539 -1.2 -3.2 putative Transcriptional regulator compare
PP_1654 -1.2 -2.3 cysteine synthase B compare
PP_2152 -1.2 -1.9 glycerophosphoryl diester phosphodiesterase compare
PP_2168 -1.2 -5.6 Transaldolase compare
PP_3603 -1.2 -5.2 Transcriptional regulator, GntR family compare
PP_1322 -1.2 -1.5 putative Lipoprotein compare
PP_1045 -1.2 -1.7 Type II secretion pathway protein XcpP compare
PP_1493 -1.2 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5500 -1.1 -2.3 protein of unknown function compare
PP_1804 -1.1 -6.2 Glycosyl transferase WbpL compare
PP_1826 -1.1 -1.6 Hydrolase, isochorismatase family compare
PP_1318 -1.1 -6.2 Cytochrome b compare
PP_3239 -1.1 -2.1 putative cointegrate resolution protein T Tn4652 compare
PP_3245 -1.1 -1.1 conserved protein of unknown function compare
PP_3637 -1.1 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0151 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1428 -1.1 -2.0 Sigma factor AlgU negative regulatory protein compare
PP_4480 -1.1 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_4320 -1.1 -3.4 cytochrome c-type biogenesis protein compare
PP_4964 -1.1 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4824 -1.1 -3.7 Sensor histidine kinase/response regulator compare
PP_4977 -1.1 -6.7 5,10-methylenetetrahydrofolate reductase compare
PP_0789 -1.1 -4.2 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1317 -1.1 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1381 -1.1 -1.1 4-carboxymuconolactone decarboxylase compare
PP_2340 -1.1 -2.2 conserved protein of unknown function compare
PP_4010 -1.1 -2.8 DNA replication inhibitor compare
PP_5495 -1.1 -2.5 protein of unknown function compare
PP_5028 -1.1 -2.3 proline iminopeptidase compare
PP_1764 -1.1 -5.4 Phosphoglycolate phosphatase 2 compare
PP_2929 -1.1 -5.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1176 -1.1 -2.6 conserved protein of unknown function compare
PP_3243 -1.0 -3.3 Acetyltransferase, GNAT family compare
PP_3506 -1.0 -3.8 Magnesium chelatase, subunit ChII compare
PP_4895 -1.0 -2.4 tRNA dimethylallyltransferase compare
PP_3098 -1.0 -1.1 conserved protein of unknown function compare
PP_3946 -1.0 -1.1 HTH-type transcriptional repressor NicR compare
PP_0414 -1.0 -3.8 Polyamine ABC transporter, permease protein compare
PP_2378 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
PP_0834 -1.0 -1.8 Sec translocation complex subunit YajC compare
PP_4993 -1.0 -2.6 Glutathione synthetase compare
PP_2375 -1.0 -6.3 cobalamin-dependent methionine synthase compare
PP_2414 -1.0 -1.6 conserved exported protein of unknown function compare
PP_0940 -1.0 -5.3 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_1097 -1.0 -1.6 Methionine--tRNA ligase compare
PP_2142 -1.0 -1.6 Cell division inhibitor SulA compare
PP_5236 -1.0 -5.8 conserved protein of unknown function compare
PP_3726 -1.0 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1702 -1.0 -2.8 Recombination-associated protein RdgC compare
PP_4891 -1.0 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5202 -1.0 -1.6 putative cell division protein compare
PP_4793 -1.0 -2.4 conserved protein of unknown function compare
PP_0025 -1.0 -0.9 hypothetical protein compare
PP_0065 -1.0 -2.7 NAD-binding component of TrK potassium transporter compare
PP_2121 -1.0 -1.4 putative Lipoprotein compare
PP_3484 -1.0 -3.5 Response regulator receiver protein compare
PP_4342 -1.0 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_2900 -1.0 -1.4 conserved protein of unknown function compare
PP_3790 -1.0 -5.3 diaminopimelate epimerase compare
PP_5456 -1.0 -1.2 conserved protein of unknown function compare
PP_5217 -0.9 -8.1 Polyphosphate kinase compare
PP_3105 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_1319 -0.9 -3.7 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4997 -0.9 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1048 -0.9 -1.6 putative protein secretion protein for export compare
PP_3110 -0.9 -1.6 protein of unknown function compare
PP_5090 -0.9 -2.4 putative cell division protein compare
PP_3555 -0.9 -3.6 putative Transmembrane sensor compare
PP_4129 -0.9 -1.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1987 -0.9 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_0957 -0.9 -1.4 D-arabinose 5-phosphate isomerase compare
PP_3043 -0.9 -0.9 conserved protein of unknown function compare
PP_4835 -0.9 -1.7 conserved exported protein of unknown function compare
PP_1489 -0.9 -2.9 CheW domain protein compare
PP_5580 -0.9 -1.3 protein of unknown function compare
PP_0942 -0.9 -4.3 regulatory protease compare
PP_4392 -0.9 -5.0 chemotaxis protein methyltransferase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Ethyl decanoate in Pseudomonas putida KT2440

For carbon source Ethyl decanoate across organisms