Experiment set29IT043 for Pseudomonas putida KT2440

Compare to:

Ethyl decanoate carbon source

200 most important genes:

  gene name fitness t score description  
PP_0967 -6.2 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5659 -5.7 -6.7 protein of unknown function compare
PP_2675 -5.5 -5.4 Cytochrome c-type protein compare
PP_4116 -5.5 -12.3 isocitrate lyase compare
PP_1988 -5.4 -11.0 3-isopropylmalate dehydrogenase compare
PP_0376 -5.3 -8.9 Coenzyme PQQ synthesis protein E compare
PP_4909 -5.1 -7.1 phosphoserine phosphatase compare
PP_3511 -5.1 -9.3 Branched-chain-amino-acid aminotransferase compare
PP_4723 -5.1 -19.4 Carbamoyl-phosphate synthase large chain compare
PP_0378 -5.1 -7.8 Pyrroloquinoline-quinone synthase compare
PP_1985 -5.1 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_0356 -4.9 -7.4 malate synthase G compare
PP_0966 -4.8 -11.3 Histidinol dehydrogenase compare
PP_0184 -4.8 -4.7 Argininosuccinate lyase compare
PP_4724 -4.7 -9.0 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_2665 -4.7 -5.5 Glycerol metabolism activator compare
PP_4678 -4.7 -15.8 Ketol-acid reductoisomerase compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_0290 -4.6 -8.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -4.5 -7.1 Glutamate 5-kinase compare
PP_4680 -4.4 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -4.3 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_0787 -4.1 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0377 -4.1 -2.6 coenzyme PQQ synthesis protein D compare
PP_1995 -4.1 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -4.0 -4.8 Ornithine carbamoyltransferase compare
PP_4679 -4.0 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -3.9 -8.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -3.9 -8.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -3.9 -19.1 Anthranilate synthase component 1 compare
PP_5097 -3.9 -14.3 homoserine O-acetyltransferase compare
PP_0965 -3.7 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2137 -3.7 -3.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_1968 -3.7 -8.0 TetR family transcriptional regulator compare
PP_1088 -3.7 -12.1 Argininosuccinate synthase compare
PP_4696 -3.6 -2.5 Nitrogen regulation protein NR(I) compare
PP_2001 -3.6 -9.4 O-succinylhomoserine sulfhydrylase compare
PP_0083 -3.6 -3.5 tryptophan synthase beta chain compare
PP_2136 -3.6 -4.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2371 -3.5 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5095 -3.5 -2.6 pyrroline-5-carboxylate reductase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -3.4 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4890 -3.4 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1110 -3.4 -7.5 serine acetyltransferase compare
PP_5322 -3.4 -8.9 putative metal ion transporter compare
PP_2671 -3.4 -9.8 Sensor histidine kinase compare
PP_5185 -3.4 -8.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3999 -3.4 -5.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -3.4 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_5015 -3.4 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5128 -3.2 -7.1 Dihydroxy-acid dehydratase compare
PP_0381 -3.2 -7.9 Coenzyme PQQ synthesis protein F compare
PP_1025 -3.1 -11.5 2-isopropylmalate synthase compare
PP_2674 -3.1 -11.1 quinoprotein ethanol dehydrogenase compare
PP_4943 -3.0 -2.0 putative Glycosyl transferase compare
PP_5098 -3.0 -9.8 methionine biosynthesis protein MetW compare
PP_0422 -2.9 -5.9 Indole-3-glycerol phosphate synthase compare
PP_5014 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4271 -2.8 -1.3 conserved protein of unknown function compare
PP_4789 -2.8 -4.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0421 -2.8 -9.3 Anthranilate phosphoribosyltransferase compare
PP_0379 -2.6 -4.9 Coenzyme PQQ synthesis protein B compare
PP_0767 -2.6 -11.0 Transcriptional regulator, LuxR family compare
PP_2433 -2.6 -3.5 conserved protein of unknown function compare
PP_2370 -2.6 -3.6 conserved protein of unknown function compare
PP_0765 -2.6 -15.4 putative adhesin (DUF1302) (from data) compare
PP_0435 -2.6 -17.2 Peptidase, M23/M37 family compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2145 -2.4 -8.6 beta-N-acetylglucosaminidase compare
PP_0420 -2.3 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3398 -2.3 -2.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4700 -2.3 -4.9 pantothenate synthetase compare
PP_1111 -2.3 -5.4 putative Synthetase compare
PP_2672 -2.2 -5.8 Transcriptional activator protein ExaE compare
PP_4131 -2.2 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_0766 -2.2 -12.5 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0888 -2.1 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_1269 -2.0 -1.5 Universal stress protein family compare
PP_4699 -2.0 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1109 -2.0 -9.1 Transcriptional regulator, GntR family compare
PP_4782 -2.0 -4.5 Phosphomethylpyrimidine kinase compare
PP_3821 -1.9 -8.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0434 -1.9 -9.1 Anhydro-N-acetylmuramic acid kinase compare
PP_1355 -1.9 -15.5 Muropeptide permease AmpG compare
PP_4126 -1.9 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0406 -1.8 -4.6 Nucleotidyltransferase family protein compare
PP_2402 -1.8 -3.0 putative Sensor histidine kinase compare
PP_2328 -1.8 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_5085 -1.8 -7.7 malic enzyme B compare
PP_4695 -1.8 -7.9 Sensory box histidine kinase compare
PP_4004 -1.8 -1.7 DNA translocase FtsK compare
PP_4130 -1.8 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5114 -1.8 -1.2 putative adenine methyltransferase compare
PP_5748 -1.7 -2.2 cytochrome c heme lyase subunit compare
PP_2868 -1.7 -7.1 Transcriptional regulator, Cro/CI family compare
PP_2682 -1.7 -3.6 Fe-containing alcohol dehydrogenase compare
PP_1233 -1.7 -3.3 sulfurtransferase compare
PP_1568 -1.6 -1.2 conserved protein of unknown function compare
PP_2378 -1.6 -2.6 Fe/S biogenesis protein NfuA compare
PP_2336 -1.6 -1.9 aconitate hydratase 1 compare
PP_0789 -1.6 -6.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1826 -1.6 -2.5 Hydrolase, isochorismatase family compare
PP_4940 -1.6 -5.9 Putative glycosyltransferase compare
PP_4874 -1.6 -1.5 50S ribosomal protein L9 compare
PP_3484 -1.5 -4.6 Response regulator receiver protein compare
PP_0405 -1.5 -11.3 conserved protein of unknown function compare
PP_2903 -1.5 -2.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5267 -1.5 -1.9 putative cytochrome c5 compare
PP_5104 -1.4 -5.8 thiazole synthase compare
PP_5176 -1.4 -1.2 conserved protein of unknown function compare
PP_5090 -1.4 -3.0 putative cell division protein compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2168 -1.4 -6.9 Transaldolase compare
PP_4964 -1.4 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_2302 -1.4 -3.0 DNA-binding, ATP-dependent protease compare
PP_1654 -1.4 -2.4 cysteine synthase B compare
PP_3824 -1.4 -2.4 conserved exported protein of unknown function compare
PP_3244 -1.3 -3.7 Magnesium transporter, MgtC family compare
PP_0593 -1.3 -1.3 putative ribosome-binding factor compare
PP_1912 -1.3 -3.9 Phosphate acyltransferase compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_3098 -1.3 -1.2 conserved protein of unknown function compare
PP_3532 -1.2 -1.4 Transcriptional regulator, AsnC family compare
PP_1764 -1.2 -3.8 Phosphoglycolate phosphatase 2 compare
PP_1679 -1.2 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0380 -1.2 -3.6 Coenzyme PQQ synthesis protein A compare
PP_1318 -1.2 -6.2 Cytochrome b compare
PP_2337 -1.2 -1.7 aconitate isomerase compare
PP_2000 -1.2 -1.1 amidophosphoribosyl transferase compare
PP_4977 -1.2 -6.8 5,10-methylenetetrahydrofolate reductase compare
PP_5313 -1.1 -1.9 DNA-binding protein HU-alpha compare
PP_3102 -1.1 -3.1 conserved protein of unknown function compare
PP_4922 -1.1 -6.8 Phosphomethylpyrimidine synthase compare
PP_3603 -1.1 -4.7 Transcriptional regulator, GntR family compare
PP_2274 -1.1 -2.5 conserved protein of unknown function compare
PP_4143 -1.1 -2.5 conserved protein of unknown function compare
PP_1387 -1.1 -3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_1702 -1.1 -2.9 Recombination-associated protein RdgC compare
PP_0164 -1.1 -6.1 conserved protein of unknown function compare
PP_4058 -1.0 -6.6 1,4-alpha-glucan branching enzyme compare
PP_0949 -1.0 -3.5 putative ATP-binding protein UPF0042 compare
PP_4124 -1.0 -1.2 NADH-quinone oxidoreductase subunit G compare
PP_1428 -1.0 -1.7 Sigma factor AlgU negative regulatory protein compare
PP_4549 -1.0 -6.0 long-chain-fatty-acid/CoA ligase compare
PP_1319 -1.0 -4.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2345 -1.0 -1.2 conserved exported protein of unknown function compare
PP_5217 -1.0 -8.4 Polyphosphate kinase compare
PP_0401 -1.0 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_1804 -1.0 -5.7 Glycosyl transferase WbpL compare
PP_4364 -1.0 -2.7 putative Anti-sigma F factor antagonist compare
PP_2844 -1.0 -2.7 Urease subunit beta compare
PP_1124 -1.0 -2.3 conserved membrane protein of unknown function compare
PP_2388 -1.0 -2.7 Transporter, LysE family compare
PP_2575 -1.0 -1.5 conserved exported protein of unknown function compare
PP_2132 -1.0 -2.8 Universal stress protein compare
PP_5594 -1.0 -1.6 conserved protein of unknown function compare
PP_4966 -1.0 -1.6 transcriptional regulator of methionine metabolism compare
PP_2581 -1.0 -1.3 conserved protein of unknown function compare
PP_3245 -0.9 -1.1 conserved protein of unknown function compare
PP_1293 -0.9 -0.9 molybdopterin synthase small subunit compare
PP_0685 -0.9 -2.0 conserved protein of unknown function compare
PP_0942 -0.9 -5.4 regulatory protease compare
PP_t10 -0.9 -1.9 tRNA-Pro compare
PP_5279 -0.9 -1.9 conserved protein of unknown function compare
PP_4824 -0.9 -3.2 Sensor histidine kinase/response regulator compare
PP_4338 -0.9 -3.9 Chemotaxis histidine kinase CheA compare
PP_4262 -0.9 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4342 -0.9 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_3555 -0.9 -4.3 putative Transmembrane sensor compare
PP_4892 -0.9 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0834 -0.9 -1.4 Sec translocation complex subunit YajC compare
PP_5456 -0.9 -1.1 conserved protein of unknown function compare
PP_1303 -0.9 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_0307 -0.9 -2.1 conserved exported protein of unknown function compare
PP_2019 -0.9 -6.2 adhesin-associated MmpL efflux pump (from data) compare
PP_5500 -0.9 -2.7 protein of unknown function compare
PP_2526 -0.9 -1.7 conserved membrane protein of unknown function compare
PP_3672 -0.8 -2.2 conserved protein of unknown function compare
PP_0940 -0.8 -4.5 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD compare
PP_5327 -0.8 -4.9 putative phosphate ABC transporter, permease subunit compare
PP_4830 -0.8 -2.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_3487 -0.8 -1.4 conserved exported protein of unknown function compare
PP_2929 -0.8 -4.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0984 -0.8 -3.9 conserved membrane protein of unknown function compare
PP_4129 -0.8 -1.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4480 -0.8 -4.0 arginine N-succinyltransferase, subunit alpha compare
PP_4320 -0.8 -3.2 cytochrome c-type biogenesis protein compare
PP_5303 -0.8 -2.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2054 -0.8 -3.0 putative DNA-binding transcriptional regulator compare
PP_1328 -0.8 -1.0 Protein MraZ compare
PP_0002 -0.8 -3.4 probable chromosome partition protein compare
PP_4497 -0.8 -3.1 conserved protein of unknown function compare
PP_1048 -0.8 -1.4 putative protein secretion protein for export compare
PP_2899 -0.8 -0.9 conserved exported protein of unknown function compare
PP_3318 -0.8 -1.1 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Ethyl decanoate in Pseudomonas putida KT2440

For carbon source Ethyl decanoate across organisms