Experiment set29IT042 for Pseudomonas putida KT2440

Compare to:

3-Hydroxydecanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -4.7 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -4.6 -8.8 3-isopropylmalate dehydrogenase compare
PP_0356 -4.5 -5.3 malate synthase G compare
PP_1985 -4.4 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_5095 -4.2 -2.9 pyrroline-5-carboxylate reductase compare
PP_0787 -4.1 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2031 -4.0 -2.8 conserved protein of unknown function compare
PP_0292 -4.0 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4116 -4.0 -10.9 isocitrate lyase compare
PP_0290 -4.0 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -4.0 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -4.0 -10.8 homoserine O-acetyltransferase compare
PP_5659 -3.9 -3.6 protein of unknown function compare
PP_4723 -3.8 -18.5 Carbamoyl-phosphate synthase large chain compare
PP_2137 -3.7 -3.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_2327 -3.7 -8.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_5289 -3.7 -3.6 Acetylglutamate kinase compare
PP_5128 -3.6 -10.2 Dihydroxy-acid dehydratase compare
PP_1088 -3.6 -10.4 Argininosuccinate synthase compare
PP_5098 -3.6 -7.6 methionine biosynthesis protein MetW compare
PP_0966 -3.6 -9.2 Histidinol dehydrogenase compare
PP_0184 -3.6 -5.4 Argininosuccinate lyase compare
PP_3511 -3.5 -7.9 Branched-chain-amino-acid aminotransferase compare
PP_5185 -3.5 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -3.5 -15.1 Anthranilate synthase component 1 compare
PP_4909 -3.4 -6.6 phosphoserine phosphatase compare
PP_0691 -3.4 -6.5 Glutamate 5-kinase compare
PP_5313 -3.4 -2.3 DNA-binding protein HU-alpha compare
PP_2001 -3.4 -11.5 O-succinylhomoserine sulfhydrylase compare
PP_0289 -3.3 -6.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0422 -3.3 -4.5 Indole-3-glycerol phosphate synthase compare
PP_4724 -3.3 -7.1 Carbamoyl-phosphate synthase small chain compare
PP_5155 -3.2 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1079 -3.2 -3.8 Ornithine carbamoyltransferase compare
PP_4678 -3.2 -12.9 Ketol-acid reductoisomerase compare
PP_4680 -3.1 -11.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -3.1 -2.1 tryptophan synthase alpha chain compare
PP_4364 -3.1 -3.6 putative Anti-sigma F factor antagonist compare
PP_1995 -3.1 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0164 -3.1 -7.7 conserved protein of unknown function compare
PP_1986 -3.1 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_0965 -3.1 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4058 -3.0 -8.9 1,4-alpha-glucan branching enzyme compare
PP_2136 -2.9 -2.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5008 -2.9 -1.9 Poly granule-associated protein compare
PP_2371 -2.8 -3.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1778 -2.8 -3.8 Lipopolysaccharide ABC export system, permease protein compare
PP_4890 -2.7 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -2.7 -6.8 Anthranilate phosphoribosyltransferase compare
PP_0083 -2.6 -2.5 tryptophan synthase beta chain compare
PP_1025 -2.6 -10.3 2-isopropylmalate synthase compare
PP_4549 -2.5 -9.3 long-chain-fatty-acid/CoA ligase compare
PP_4679 -2.5 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -2.5 -5.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5015 -2.5 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2903 -2.5 -2.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5014 -2.5 -1.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_5090 -2.4 -3.3 putative cell division protein compare
PP_5322 -2.4 -6.4 putative metal ion transporter compare
PP_1224 -2.3 -5.2 periplasmic subunit of the TolQRA transport system compare
PP_5007 -2.3 -3.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2370 -2.3 -3.3 conserved protein of unknown function compare
PP_4799 -2.3 -1.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4817 -2.3 -4.9 MaoC domain protein compare
PP_4940 -2.3 -4.4 Putative glycosyltransferase compare
PP_3821 -2.3 -8.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4271 -2.3 -1.0 conserved protein of unknown function compare
PP_2499 -2.2 -1.4 conserved protein of unknown function compare
PP_0435 -2.2 -15.6 Peptidase, M23/M37 family compare
PP_0767 -2.2 -9.1 Transcriptional regulator, LuxR family compare
PP_2328 -2.1 -3.3 Phosphoadenosine phosphosulfate reductase compare
PP_4700 -2.1 -3.8 pantothenate synthetase compare
PP_3999 -2.1 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1968 -2.1 -5.6 TetR family transcriptional regulator compare
PP_1779 -2.0 -4.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1553 -2.0 -1.9 conserved protein of unknown function compare
PP_0765 -2.0 -11.8 putative adhesin (DUF1302) (from data) compare
PP_1355 -1.9 -14.0 Muropeptide permease AmpG compare
PP_4109 -1.9 -2.8 conserved protein of unknown function compare
PP_3481 -1.9 -1.9 conserved exported protein of unknown function compare
PP_4699 -1.9 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5701 -1.9 -1.7 conserved protein of unknown function compare
PP_4943 -1.9 -1.3 putative Glycosyl transferase compare
PP_0766 -1.8 -9.5 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0872 -1.8 -7.4 Peptide chain release factor 3 compare
PP_4696 -1.8 -3.2 Nitrogen regulation protein NR(I) compare
PP_2999 -1.8 -1.4 Glyoxalase family protein compare
PP_5582 -1.8 -1.1 conserved protein of unknown function compare
PP_2145 -1.7 -5.6 beta-N-acetylglucosaminidase compare
PP_1654 -1.7 -1.7 cysteine synthase B compare
PP_0420 -1.7 -6.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4136 -1.7 -0.9 Transcriptional regulator, LuxR family compare
PP_3244 -1.7 -3.4 Magnesium transporter, MgtC family compare
PP_2433 -1.7 -2.2 conserved protein of unknown function compare
PP_1774 -1.7 -1.4 conserved exported protein of unknown function compare
PP_0434 -1.7 -7.8 Anhydro-N-acetylmuramic acid kinase compare
PP_1493 -1.6 -4.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1679 -1.6 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4262 -1.6 -2.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0405 -1.6 -11.6 conserved protein of unknown function compare
PP_4789 -1.5 -2.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_t12 -1.5 -1.0 tRNA-Thr compare
PP_3098 -1.5 -1.1 conserved protein of unknown function compare
PP_4891 -1.5 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2581 -1.4 -1.4 conserved protein of unknown function compare
PP_3102 -1.4 -4.6 conserved protein of unknown function compare
PP_5085 -1.4 -5.4 malic enzyme B compare
PP_5654 -1.4 -1.3 putative phosphotriesterase compare
PP_5717 -1.4 -1.6 conserved protein of unknown function compare
PP_5303 -1.4 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4122 -1.3 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0377 -1.3 -1.3 coenzyme PQQ synthesis protein D compare
PP_0673 -1.3 -1.1 conserved protein of unknown function compare
PP_4814 -1.3 -1.9 ATP-dependent protease La domain protein compare
PP_0834 -1.3 -1.5 Sec translocation complex subunit YajC compare
PP_5225 -1.2 -1.3 frataxin compare
PP_0002 -1.2 -3.1 probable chromosome partition protein compare
PP_2019 -1.2 -7.9 adhesin-associated MmpL efflux pump (from data) compare
PP_2046 -1.2 -3.0 Transcriptional regulator, LysR family compare
PP_0381 -1.2 -5.3 Coenzyme PQQ synthesis protein F compare
PP_4874 -1.2 -0.8 50S ribosomal protein L9 compare
PP_2356 -1.2 -6.5 putative Phytochrome family protein compare
PP_1764 -1.2 -3.8 Phosphoglycolate phosphatase 2 compare
PP_2088 -1.2 -3.0 RNA polymerase sigma factor SigX compare
PP_5267 -1.2 -1.6 putative cytochrome c5 compare
PP_2027 -1.2 -2.9 conserved exported protein of unknown function compare
PP_3627 -1.2 -4.8 conserved protein of unknown function compare
PP_1683 -1.1 -2.1 Transcriptional regulator, MarR family compare
PP_4695 -1.1 -5.6 Sensory box histidine kinase compare
PP_2047 -1.1 -4.5 3-hydroxyacyl-CoA dehydrogenase family protein compare
PP_2908 -1.1 -2.6 DNA-binding transcriptional repressor compare
PP_2354 -1.1 -5.5 Sensory box histidine kinase/response regulator compare
PP_0914 -1.1 -5.2 GGDEF domain protein compare
PP_2868 -1.1 -4.0 Transcriptional regulator, Cro/CI family compare
PP_4143 -1.1 -2.2 conserved protein of unknown function compare
PP_0406 -1.1 -3.0 Nucleotidyltransferase family protein compare
PP_3480 -1.0 -2.0 conserved protein of unknown function compare
PP_5140 -1.0 -2.2 Transcriptional regulator, MerR family compare
PP_4515 -1.0 -2.8 Transcriptional regulator, MarR family compare
PP_1142 -1.0 -0.6 conserved protein of unknown function compare
PP_3731 -1.0 -4.8 Transcriptional regulator, TetR family compare
PP_3232 -1.0 -2.8 Acetyltransferase, GNAT family compare
PP_2375 -1.0 -6.4 cobalamin-dependent methionine synthase compare
PP_1328 -1.0 -1.3 Protein MraZ compare
PP_3833 -1.0 -1.9 Response regulator compare
PP_3806 -1.0 -2.8 Hydrolase, isochorismatase family compare
PP_2168 -1.0 -4.5 Transaldolase compare
PP_5393 -1.0 -0.8 putative metal-binding chaperone compare
PP_3967 -1.0 -1.4 MutT/nudix family protein compare
PP_4392 -1.0 -4.9 chemotaxis protein methyltransferase compare
PP_0362 -1.0 -5.6 Biotin synthase compare
PP_5295 -1.0 -1.0 conserved protein of unknown function compare
PP_2857 -1.0 -1.5 conserved exported protein of unknown function compare
PP_2633 -1.0 -0.9 conserved protein of unknown function compare
PP_3505 -1.0 -1.7 conserved protein of unknown function compare
PP_0775 -1.0 -1.3 conserved protein of unknown function compare
PP_1941 -1.0 -3.6 conserved protein of unknown function compare
PP_5486 -1.0 -0.8 conserved protein of unknown function compare
PP_0763 -1.0 -6.1 Medium-chain-fatty-acid CoA ligase compare
PP_4546 -0.9 -1.9 ATP-dependent helicase HrpA compare
PP_4697 -0.9 -2.2 poly(A) polymerase compare
PP_5705 -0.9 -0.9 protein of unknown function compare
PP_3506 -0.9 -2.3 Magnesium chelatase, subunit ChII compare
PP_4130 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4098 -0.9 -0.6 UvrABC system protein C compare
PP_1387 -0.9 -1.8 Probable HTH-type transcriptional regulator TtgR compare
PP_4739 -0.9 -1.9 conserved protein of unknown function compare
PP_5640 -0.9 -2.2 conserved protein of unknown function compare
PP_2668 -0.9 -2.0 ABC efflux transporter, ATP-binding protein compare
PP_5109 -0.9 -3.8 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_2390 -0.9 -3.6 Transcriptional regulator, LysR family compare
PP_2976 -0.9 -1.7 putative transposase compare
PP_4550 -0.9 -5.1 long-chain-fatty-acid/CoA ligase compare
PP_4424 -0.9 -2.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1912 -0.9 -2.3 Phosphate acyltransferase compare
PP_3824 -0.9 -1.6 conserved exported protein of unknown function compare
PP_3580 -0.8 -1.1 conserved protein of unknown function compare
PP_1237 -0.8 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4266 -0.8 -2.0 Adenine phosphoribosyltransferase compare
PP_1589 -0.8 -3.9 uridylyltransferase compare
PP_5748 -0.8 -1.1 cytochrome c heme lyase subunit compare
PP_2756 -0.8 -2.0 conserved protein of unknown function compare
PP_5279 -0.8 -1.5 conserved protein of unknown function compare
PP_5176 -0.8 -1.3 conserved protein of unknown function compare
PP_2324 -0.8 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4754 -0.8 -3.9 Transcriptional regulator, TetR family compare
PP_0610 -0.8 -1.7 conserved exported protein of unknown function compare
PP_2824 -0.8 -1.9 Transcriptional regulator, TetR family compare
PP_1644 -0.8 -2.3 NAD(P)H dehydrogenase (quinone) compare
PP_0261 -0.8 -2.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3766 -0.8 -1.4 Lactoylglutathione lyase compare
PP_4499 -0.8 -2.2 putative maturation enzyme compare
PP_5507 -0.8 -1.3 protein of unknown function compare
PP_5179 -0.8 -4.2 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_4178 -0.8 -2.5 Dienelactone hydrolase family protein compare
PP_2005 -0.8 -2.6 conserved exported protein of unknown function compare
PP_5035 -0.8 -2.3 Histidine utilization repressor compare
PP_0291 -0.8 -1.4 conserved protein of unknown function compare
PP_3332 -0.8 -1.2 putative cytochrome c-type protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 3-Hydroxydecanoic acid in Pseudomonas putida KT2440

For carbon source 3-Hydroxydecanoic acid across organisms