Experiment set29IT041 for Pseudomonas putida KT2440

Compare to:

3-Hydroxydecanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -4.0 -8.5 Carbamoyl-phosphate synthase small chain compare
PP_2370 -4.0 -2.7 conserved protein of unknown function compare
PP_0787 -3.5 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4116 -3.4 -7.0 isocitrate lyase compare
PP_4723 -3.4 -13.5 Carbamoyl-phosphate synthase large chain compare
PP_1985 -3.4 -2.3 3-isopropylmalate dehydratase large subunit compare
PP_5015 -3.2 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5659 -3.2 -3.5 protein of unknown function compare
PP_0293 -3.1 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -3.1 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_3505 -3.1 -2.1 conserved protein of unknown function compare
PP_5098 -3.0 -5.0 methionine biosynthesis protein MetW compare
PP_4817 -3.0 -3.6 MaoC domain protein compare
PP_2433 -3.0 -2.0 conserved protein of unknown function compare
PP_1088 -2.9 -6.2 Argininosuccinate synthase compare
PP_0691 -2.9 -4.4 Glutamate 5-kinase compare
PP_0292 -2.8 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5097 -2.8 -7.1 homoserine O-acetyltransferase compare
PP_0967 -2.8 -5.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1231 -2.8 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1988 -2.7 -5.8 3-isopropylmalate dehydrogenase compare
PP_3511 -2.7 -5.5 Branched-chain-amino-acid aminotransferase compare
PP_5185 -2.7 -3.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -2.7 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0356 -2.6 -4.0 malate synthase G compare
PP_4678 -2.6 -8.4 Ketol-acid reductoisomerase compare
PP_0290 -2.6 -4.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -2.6 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -2.6 -5.5 Histidinol dehydrogenase compare
PP_4679 -2.5 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -2.5 -5.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5008 -2.5 -1.1 Poly granule-associated protein compare
PP_5155 -2.5 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -2.5 -6.0 Dihydroxy-acid dehydratase compare
PP_4909 -2.4 -4.1 phosphoserine phosphatase compare
PP_1079 -2.4 -1.7 Ornithine carbamoyltransferase compare
PP_4364 -2.4 -2.8 putative Anti-sigma F factor antagonist compare
PP_1025 -2.4 -8.3 2-isopropylmalate synthase compare
PP_5445 -2.3 -2.7 conserved protein of unknown function compare
PP_4549 -2.3 -5.9 long-chain-fatty-acid/CoA ligase compare
PP_2740 -2.3 -1.6 Transcriptional regulator, MerR family compare
PP_2001 -2.3 -6.9 O-succinylhomoserine sulfhydrylase compare
PP_0289 -2.3 -4.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0965 -2.3 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -2.2 -2.1 Acetylglutamate kinase compare
PP_0417 -2.2 -9.7 Anthranilate synthase component 1 compare
PP_4699 -2.2 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2306 -2.1 -1.9 conserved exported protein of unknown function compare
PP_0422 -2.1 -2.5 Indole-3-glycerol phosphate synthase compare
PP_1912 -2.1 -2.5 Phosphate acyltransferase compare
PP_1968 -2.1 -4.7 TetR family transcriptional regulator compare
PP_0765 -2.1 -11.1 putative adhesin (DUF1302) (from data) compare
PP_2899 -2.1 -1.4 conserved exported protein of unknown function compare
PP_1986 -2.0 -1.4 3-isopropylmalate dehydratase small subunit compare
PP_1774 -2.0 -1.4 conserved exported protein of unknown function compare
PP_2345 -2.0 -2.3 conserved exported protein of unknown function compare
PP_0888 -2.0 -1.3 Photosynthetic apparatus regulatory protein RegA compare
PP_0195 -1.9 -1.9 conserved protein of unknown function compare
PP_0184 -1.9 -2.7 Argininosuccinate lyase compare
PP_4952 -1.9 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0435 -1.9 -12.6 Peptidase, M23/M37 family compare
PP_0767 -1.9 -5.9 Transcriptional regulator, LuxR family compare
PP_1355 -1.9 -13.2 Muropeptide permease AmpG compare
PP_1609 -1.9 -1.6 conserved protein of unknown function compare
PP_2816 -1.9 -2.2 putative Transcriptional regulator NfxB compare
PP_3773 -1.9 -1.8 conserved protein of unknown function compare
PP_3821 -1.9 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0420 -1.8 -6.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1548 -1.8 -1.8 conserved protein of unknown function compare
PP_4058 -1.8 -5.0 1,4-alpha-glucan branching enzyme compare
PP_3105 -1.8 -1.6 conserved membrane protein of unknown function compare
PP_3580 -1.8 -1.2 conserved protein of unknown function compare
PP_2903 -1.7 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0434 -1.7 -5.8 Anhydro-N-acetylmuramic acid kinase compare
PP_2018 -1.7 -3.6 adhesin-associated BNR repeat protein (from data) compare
PP_2883 -1.7 -1.5 conserved protein of unknown function compare
PP_0766 -1.7 -8.2 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_3891 -1.7 -2.0 conserved protein of unknown function compare
PP_2868 -1.7 -4.0 Transcriptional regulator, Cro/CI family compare
PP_2371 -1.6 -1.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0630 -1.6 -0.8 DNA gyrase inhibitor YacG compare
PP_1224 -1.6 -3.1 periplasmic subunit of the TolQRA transport system compare
PP_3926 -1.6 -1.1 short-chain dehydrogenase compare
PP_3833 -1.6 -3.2 Response regulator compare
PP_3434 -1.6 -1.5 conserved protein of unknown function compare
PP_2773 -1.6 -1.1 conserved protein of unknown function compare
PP_0735 -1.6 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_2307 -1.6 -1.5 conserved protein of unknown function compare
PP_5095 -1.6 -1.5 pyrroline-5-carboxylate reductase compare
PP_2145 -1.6 -5.4 beta-N-acetylglucosaminidase compare
PP_5571 -1.5 -1.3 conserved protein of unknown function compare
PP_0291 -1.5 -2.1 conserved protein of unknown function compare
PP_1293 -1.5 -1.0 molybdopterin synthase small subunit compare
PP_1764 -1.5 -4.3 Phosphoglycolate phosphatase 2 compare
PP_0405 -1.5 -10.2 conserved protein of unknown function compare
PP_3048 -1.5 -1.6 conserved protein of unknown function compare
PP_0512 -1.5 -1.9 hypothetical protein compare
PP_1381 -1.5 -1.0 4-carboxymuconolactone decarboxylase compare
PP_5104 -1.4 -3.7 thiazole synthase compare
PP_3506 -1.4 -2.1 Magnesium chelatase, subunit ChII compare
PP_0872 -1.4 -5.6 Peptide chain release factor 3 compare
PP_1054 -1.4 -1.4 Type II secretion pathway protein XcpZ compare
PP_0126 -1.4 -2.5 Cytochrome c4 compare
PP_3551 -1.4 -1.5 DNA-binding response regulator, LuxR family compare
PP_4999 -1.4 -1.4 dihydroorotase-like protein compare
PP_2681 -1.4 -1.9 coenzyme PQQ synthesis protein D compare
PP_5203 -1.4 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_0593 -1.4 -1.0 putative ribosome-binding factor compare
PP_1941 -1.4 -3.5 conserved protein of unknown function compare
PP_1778 -1.4 -1.4 Lipopolysaccharide ABC export system, permease protein compare
PP_5507 -1.4 -2.9 protein of unknown function compare
PP_3098 -1.4 -0.9 conserved protein of unknown function compare
PP_4700 -1.4 -2.1 pantothenate synthetase compare
PP_4997 -1.4 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5322 -1.3 -3.5 putative metal ion transporter compare
PP_2555 -1.3 -2.3 conserved protein of unknown function compare
PP_0164 -1.3 -3.6 conserved protein of unknown function compare
PP_3365 -1.3 -1.5 Acetolactate synthase compare
PP_4271 -1.3 -0.6 conserved protein of unknown function compare
PP_4262 -1.3 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0753 -1.3 -2.9 putative Lipoprotein compare
PP_2019 -1.3 -7.2 adhesin-associated MmpL efflux pump (from data) compare
PP_4793 -1.3 -1.9 conserved protein of unknown function compare
PP_5007 -1.3 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3627 -1.3 -4.8 conserved protein of unknown function compare
PP_t10 -1.3 -1.1 tRNA-Pro compare
PP_3541 -1.3 -0.9 Transporter, MgtC family compare
PP_0139 -1.2 -2.6 putative Lipoprotein compare
PP_0082 -1.2 -1.5 tryptophan synthase alpha chain compare
PP_3247 -1.2 -1.8 Transporter, bile acid/Na+ symporter family compare
PP_5085 -1.2 -3.4 malic enzyme B compare
PP_0421 -1.2 -3.2 Anthranilate phosphoribosyltransferase compare
PP_2354 -1.2 -5.3 Sensory box histidine kinase/response regulator compare
PP_2356 -1.2 -4.9 putative Phytochrome family protein compare
PP_0095 -1.2 -4.1 putative enzyme of unknown function compare
PP_1644 -1.2 -2.4 NAD(P)H dehydrogenase (quinone) compare
PP_2568 -1.2 -1.0 Ring-cleaving dioxygenase compare
PP_5508 -1.2 -0.8 conserved protein of unknown function compare
PP_1956 -1.2 -3.1 conserved exported protein of unknown function compare
PP_0361 -1.2 -2.5 putative Competence protein ComF compare
PP_0834 -1.2 -1.4 Sec translocation complex subunit YajC compare
PP_1779 -1.2 -1.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3312 -1.2 -0.7 putative Heat shock protein compare
PP_0261 -1.1 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0536 -1.1 -2.0 conserved protein of unknown function compare
PP_3902 -1.1 -1.1 conserved protein of unknown function compare
PP_3014 -1.1 -1.8 conserved exported protein of unknown function compare
PP_5274 -1.1 -1.9 conserved protein of unknown function compare
PP_1328 -1.1 -1.1 Protein MraZ compare
PP_3447 -1.1 -0.8 conserved membrane protein of unknown function compare
PP_2847 -1.1 -1.0 Urease accessory protein UreJ compare
PP_4266 -1.1 -2.1 Adenine phosphoribosyltransferase compare
PP_5658 -1.1 -2.4 protein of unknown function compare
PP_0381 -1.1 -3.3 Coenzyme PQQ synthesis protein F compare
PP_3762 -1.1 -1.9 Response regulator compare
PP_1489 -1.1 -1.9 CheW domain protein compare
PP_3378 -1.1 -1.3 putative 2-ketogluconokinase compare
PP_4739 -1.1 -2.1 conserved protein of unknown function compare
PP_2646 -1.1 -2.6 conserved protein of unknown function compare
PP_3532 -1.1 -0.9 Transcriptional regulator, AsnC family compare
PP_0083 -1.0 -1.0 tryptophan synthase beta chain compare
PP_4545 -1.0 -2.3 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_0624 -1.0 -2.9 Uncharacterized protein YfiH compare
PP_0042 -1.0 -2.8 conserved exported protein of unknown function compare
PP_1096 -1.0 -0.8 putative electron transport complex protein compare
PP_2390 -1.0 -2.8 Transcriptional regulator, LysR family compare
PP_0414 -1.0 -2.5 Polyamine ABC transporter, permease protein compare
PP_1739 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_5083 -1.0 -1.0 putative Type IV pili biogenesis protein PilM compare
PP_4094 -1.0 -1.5 conserved protein of unknown function compare
PP_3332 -1.0 -1.0 putative cytochrome c-type protein compare
PP_4897 -1.0 -2.5 N-acetylmuramoyl-L-alanine amidase compare
PP_2547 -1.0 -1.7 Transcriptional regulator, LysR family compare
PP_0153 -1.0 -1.2 hypothetical protein compare
PP_4199 -1.0 -1.0 putative Lipoprotein compare
PP_4258 -1.0 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_1605 -1.0 -1.4 Ribonuclease HII compare
PP_2047 -1.0 -3.2 3-hydroxyacyl-CoA dehydrogenase family protein compare
PP_0246 -1.0 -1.0 two-component system DNA-binding response transcriptional dual regulator compare
PP_4256 -1.0 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_4238 -1.0 -1.2 conserved protein of unknown function compare
PP_4317 -1.0 -1.1 conserved protein of unknown function compare
PP_2324 -0.9 -3.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2972 -0.9 -0.9 conserved protein of unknown function compare
PP_3638 -0.9 -2.7 putative Acyl-CoA dehydrogenase compare
PP_1742 -0.9 -2.0 conserved inner membrane protein of unknown function compare
PP_0406 -0.9 -2.8 Nucleotidyltransferase family protein compare
PP_2798 -0.9 -2.3 putative Oxidoreductase compare
PP_1763 -0.9 -1.9 putative oxidoreductase compare
PP_0763 -0.9 -4.7 Medium-chain-fatty-acid CoA ligase compare
PP_4285 -0.9 -2.4 5-hydroxyisourate hydrolase compare
PP_3244 -0.9 -1.1 Magnesium transporter, MgtC family compare
PP_3245 -0.9 -0.9 conserved protein of unknown function compare
PP_4338 -0.9 -3.4 Chemotaxis histidine kinase CheA compare
PP_1826 -0.9 -0.9 Hydrolase, isochorismatase family compare
PP_t49 -0.9 -1.8 tRNA-Met compare
PP_2513 -0.9 -1.2 4-oxalomesaconate tautomerase compare
PP_2005 -0.9 -2.7 conserved exported protein of unknown function compare
PP_2060 -0.9 -1.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5177 -0.9 -3.3 spermidine/putrescine ABC transporter - permease subunit compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 3-Hydroxydecanoic acid in Pseudomonas putida KT2440

For carbon source 3-Hydroxydecanoic acid across organisms