Experiment set29IT040 for Pseudomonas putida KT2440

Compare to:

2,3-Butanediol carbon source

200 most important genes:

  gene name fitness t score description  
PP_1385 -8.9 -14.8 Probable efflux pump membrane transporter TtgB compare
PP_4723 -8.6 -11.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -8.3 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_1384 -7.5 -10.9 Probable efflux pump outer membrane protein TtgC compare
PP_1386 -7.4 -12.4 Probable efflux pump periplasmic linker TtgA compare
PP_2322 -7.4 -9.4 Major outer membrane lipoprotein compare
PP_0346 -7.3 -5.0 putative Heptose kinase WapQ compare
PP_5659 -7.2 -5.0 protein of unknown function compare
PP_3511 -6.8 -4.7 Branched-chain-amino-acid aminotransferase compare
PP_1232 -6.3 -11.4 conserved exported protein of unknown function compare
PP_1988 -6.3 -7.5 3-isopropylmalate dehydrogenase compare
PP_0787 -6.1 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4116 -6.0 -10.9 isocitrate lyase compare
PP_1985 -6.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_4679 -5.9 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0691 -5.9 -6.8 Glutamate 5-kinase compare
PP_0293 -5.9 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.9 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0962 -5.8 -4.0 toluene-tolerance protein compare
PP_4890 -5.8 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5104 -5.7 -6.8 thiazole synthase compare
PP_3821 -5.7 -6.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2327 -5.7 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -5.6 -7.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5185 -5.6 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -5.6 -9.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5327 -5.5 -9.1 putative phosphate ABC transporter, permease subunit compare
PP_0290 -5.4 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.4 -12.6 Ketol-acid reductoisomerase compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_1231 -5.4 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5329 -5.3 -3.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0417 -5.3 -17.0 Anthranilate synthase component 1 compare
PP_0967 -5.3 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -5.2 -6.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -5.2 -3.6 Argininosuccinate lyase compare
PP_5015 -5.2 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4909 -5.1 -7.0 phosphoserine phosphatase compare
PP_0356 -5.0 -7.7 malate synthase G compare
PP_0961 -5.0 -8.4 toluene tolerance protein compare
PP_0966 -5.0 -11.2 Histidinol dehydrogenase compare
PP_5097 -5.0 -12.9 homoserine O-acetyltransferase compare
PP_0422 -5.0 -5.9 Indole-3-glycerol phosphate synthase compare
PP_5098 -4.9 -8.2 methionine biosynthesis protein MetW compare
PP_1995 -4.9 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -4.9 -11.9 Argininosuccinate synthase compare
PP_0368 -4.9 -12.9 putative Acyl-CoA dehydrogenase compare
PP_5128 -4.8 -9.1 Dihydroxy-acid dehydratase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_2001 -4.7 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_4699 -4.6 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0598 -4.5 -13.0 paraquat-inducible protein A compare
PP_1079 -4.5 -4.4 Ornithine carbamoyltransferase compare
PP_2163 -4.5 -9.6 VacJ lipoprotein compare
PP_0599 -4.5 -19.5 paraquat-inducible protein B compare
PP_0959 -4.4 -3.1 phospholipid ABC transporter compare
PP_5085 -4.3 -9.3 malic enzyme B compare
PP_0960 -4.3 -3.0 phospholipid ABC transporter binding protein compare
PP_0965 -4.3 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4922 -4.3 -13.7 Phosphomethylpyrimidine synthase compare
PP_4782 -4.3 -5.1 Phosphomethylpyrimidine kinase compare
PP_1233 -4.2 -4.1 sulfurtransferase compare
PP_4364 -4.2 -4.9 putative Anti-sigma F factor antagonist compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_2136 -4.1 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5145 -4.1 -16.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2320 -4.1 -15.3 conserved exported protein of unknown function compare
PP_0421 -4.0 -8.0 Anthranilate phosphoribosyltransferase compare
PP_2371 -4.0 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4937 -4.0 -2.8 toluene tolerance protein compare
PP_4940 -4.0 -2.7 Putative glycosyltransferase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_4700 -3.9 -5.4 pantothenate synthetase compare
PP_5217 -3.9 -16.3 Polyphosphate kinase compare
PP_1348 -3.9 -8.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5303 -3.8 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1110 -3.8 -3.2 serine acetyltransferase compare
PP_3244 -3.7 -3.9 Magnesium transporter, MgtC family compare
PP_0345 -3.7 -3.6 putative Heptose kinase WapP compare
PP_3474 -3.7 -3.9 putative Curli fiber protein CsgE compare
PP_5745 -3.6 -10.4 paraquat-inducible protein A compare
PP_4696 -3.6 -3.5 Nitrogen regulation protein NR(I) compare
PP_3999 -3.6 -4.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2323 -3.6 -8.8 conserved protein of unknown function compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2370 -3.5 -4.2 conserved protein of unknown function compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4549 -3.4 -12.1 long-chain-fatty-acid/CoA ligase compare
PP_5328 -3.4 -4.1 putative phosphate transport system permease protein compare
PP_0420 -3.3 -9.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1111 -3.3 -8.3 putative Synthetase compare
PP_1912 -3.3 -6.3 Phosphate acyltransferase compare
PP_0630 -3.3 -1.2 DNA gyrase inhibitor YacG compare
PP_5095 -3.2 -3.1 pyrroline-5-carboxylate reductase compare
PP_0735 -3.2 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_3484 -3.2 -5.5 Response regulator receiver protein compare
PP_0958 -3.2 -7.1 phospholipid ABC transporter ATP-binding subunit compare
PP_4943 -3.0 -2.0 putative Glycosyl transferase compare
PP_1109 -2.9 -13.9 Transcriptional regulator, GntR family compare
PP_4895 -2.7 -1.9 tRNA dimethylallyltransferase compare
PP_4941 -2.7 -3.7 conserved exported protein of unknown function compare
PP_0612 -2.7 -9.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_2433 -2.7 -3.1 conserved protein of unknown function compare
PP_3454 -2.6 -8.5 putative transcriptional regulatory protein compare
PP_1325 -2.6 -6.7 putative lipoprotein compare
PP_0025 -2.6 -1.3 hypothetical protein compare
PP_0555 -2.6 -7.5 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
PP_0856 -2.6 -1.8 conserved lipoprotein of unknown function compare
PP_3453 -2.5 -10.2 putative Sensor protein RstB compare
PP_1025 -2.4 -7.8 2-isopropylmalate synthase compare
PP_0963 -2.4 -3.1 putative BolA family protein compare
PP_0833 -2.4 -3.6 queuine tRNA-ribosyltransferase compare
PP_4936 -2.4 -7.3 O-antigen polymerase compare
PP_0553 -2.3 -4.5 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_3245 -2.3 -1.3 conserved protein of unknown function compare
PP_0164 -2.3 -7.3 conserved protein of unknown function compare
PP_0852 -2.2 -2.8 Transcriptional regulator, Cro/CI family compare
PP_0554 -2.2 -10.7 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta compare
PP_0291 -2.2 -3.5 conserved protein of unknown function compare
PP_0362 -2.2 -11.1 Biotin synthase compare
PP_0948 -2.2 -1.9 Phosphocarrier protein HPr compare
PP_0673 -2.2 -1.7 conserved protein of unknown function compare
PP_0556 -2.2 -2.6 Acetoin catabolism protein compare
PP_0246 -2.2 -1.7 two-component system DNA-binding response transcriptional dual regulator compare
PP_2299 -2.1 -3.7 Trigger factor compare
PP_5331 -2.1 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_0888 -2.1 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4487 -2.1 -14.8 acetyl-CoA synthetase compare
PP_2999 -2.1 -1.4 Glyoxalase family protein compare
PP_0058 -2.0 -14.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0557 -2.0 -7.0 Acetoin catabolism regulatory protein compare
PP_3539 -2.0 -2.8 putative Transcriptional regulator compare
PP_0063 -2.0 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2324 -1.9 -3.8 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1352 -1.9 -4.8 UPF0234 protein PP_1352 compare
PP_0366 -1.9 -7.0 dethiobiotin synthetase compare
PP_1426 -1.9 -10.4 L-aspartate oxidase compare
PP_1824 -1.9 -1.6 Smr domain protein compare
PP_4342 -1.9 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_5084 -1.8 -9.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0957 -1.8 -1.6 D-arabinose 5-phosphate isomerase compare
PP_2665 -1.8 -3.6 Glycerol metabolism activator compare
PP_0122 -1.8 -3.4 conserved exported protein of unknown function compare
PP_5055 -1.8 -3.7 Sulfurtransferase compare
PP_2373 -1.8 -2.5 conserved protein of unknown function compare
PP_3154 -1.8 -8.8 lipid A 3-O-deacylase compare
PP_4099 -1.7 -10.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0364 -1.7 -6.6 pimeloyl-[acp] methyl ester esterase compare
PP_0435 -1.7 -11.8 Peptidase, M23/M37 family compare
PP_5313 -1.7 -1.3 DNA-binding protein HU-alpha compare
PP_4268 -1.7 -0.9 nucleoid-associated broad specificity regulator compare
PP_4262 -1.7 -2.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4120 -1.6 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_2328 -1.6 -4.8 Phosphoadenosine phosphosulfate reductase compare
PP_1632 -1.6 -1.2 conserved protein of unknown function compare
PP_2402 -1.6 -2.6 putative Sensor histidine kinase compare
PP_3614 -1.6 -2.4 conserved membrane protein of unknown function compare
PP_0365 -1.6 -7.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4984 -1.6 -7.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0127 -1.6 -3.4 Thiol:disulfide interchange protein compare
PP_1048 -1.6 -1.8 putative protein secretion protein for export compare
PP_0363 -1.6 -8.6 8-amino-7-oxononanoate synthase compare
PP_5096 -1.6 -4.3 putative factor involved in shape determination compare
PP_4004 -1.6 -2.1 DNA translocase FtsK compare
PP_1224 -1.6 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_2682 -1.5 -4.4 Fe-containing alcohol dehydrogenase compare
PP_5274 -1.5 -2.1 conserved protein of unknown function compare
PP_4993 -1.5 -3.3 Glutathione synthetase compare
PP_0834 -1.5 -2.3 Sec translocation complex subunit YajC compare
PP_0855 -1.5 -3.4 conserved protein of unknown function compare
PP_0545 -1.5 -5.7 aldehyde dehydrogenase compare
PP_2160 -1.5 -4.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0725 -1.5 -5.7 conserved hypothetical TPR repeat protein compare
PP_0370 -1.4 -9.2 Acyl-CoA dehydrogenase family protein compare
PP_5229 -1.4 -4.9 conserved protein of unknown function compare
PP_1650 -1.4 -7.6 Sensor protein GacS compare
PP_0117 -1.4 -4.4 Zn(2+) ABC transporter - permease subunit compare
PP_2309 -1.4 -1.6 conserved protein of unknown function compare
PP_1876 -1.4 -2.3 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1427 -1.4 -6.0 RNA polymerase sigma E factor compare
PP_1779 -1.4 -4.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1410 -1.4 -1.0 conserved protein of unknown function compare
PP_1669 -1.4 -5.0 NLP/P60 family protein compare
PP_1096 -1.4 -1.2 putative electron transport complex protein compare
PP_0120 -1.4 -4.6 putative zinc ABC transporter compare
PP_2319 -1.4 -3.5 conserved protein of unknown function compare
PP_4265 -1.3 -2.2 DNA-binding transcriptional dual regulator compare
PP_1968 -1.3 -5.7 TetR family transcriptional regulator compare
PP_5028 -1.3 -2.7 proline iminopeptidase compare
PP_0340 -1.3 -7.4 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1293 -1.3 -1.1 molybdopterin synthase small subunit compare
PP_4874 -1.3 -1.1 50S ribosomal protein L9 compare
PP_3938 -1.3 -1.6 conserved protein of unknown function compare
PP_4938 -1.3 -4.4 putative Glycosyl transferase compare
PP_4944 -1.3 -2.1 Carbamoyltransferase compare
PP_1303 -1.3 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_4126 -1.3 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_3790 -1.3 -6.2 diaminopimelate epimerase compare


Specific Phenotypes

For 23 genes in this experiment

For carbon source 2,3-Butanediol in Pseudomonas putida KT2440

For carbon source 2,3-Butanediol across organisms