Experiment set29IT039 for Pseudomonas putida KT2440

Compare to:

2,3-Butanediol carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -6.4 -6.3 protein of unknown function compare
PP_0422 -6.4 -4.4 Indole-3-glycerol phosphate synthase compare
PP_4364 -6.3 -4.4 putative Anti-sigma F factor antagonist compare
PP_0356 -6.0 -5.8 malate synthase G compare
PP_1988 -5.7 -10.2 3-isopropylmalate dehydrogenase compare
PP_2370 -5.4 -5.3 conserved protein of unknown function compare
PP_4116 -5.3 -13.6 isocitrate lyase compare
PP_4680 -5.3 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -5.2 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.2 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -5.2 -8.0 phosphoserine phosphatase compare
PP_0967 -5.2 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -5.2 -6.2 3-isopropylmalate dehydratase large subunit compare
PP_0292 -5.1 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -5.0 -12.4 Argininosuccinate synthase compare
PP_1995 -5.0 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0184 -5.0 -4.8 Argininosuccinate lyase compare
PP_4999 -4.9 -3.4 dihydroorotase-like protein compare
PP_4723 -4.9 -17.5 Carbamoyl-phosphate synthase large chain compare
PP_5098 -4.8 -9.8 methionine biosynthesis protein MetW compare
PP_5289 -4.8 -4.7 Acetylglutamate kinase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0966 -4.8 -12.3 Histidinol dehydrogenase compare
PP_4890 -4.8 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_1231 -4.8 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -4.7 -13.1 O-succinylhomoserine sulfhydrylase compare
PP_4679 -4.6 -6.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -4.5 -15.3 homoserine O-acetyltransferase compare
PP_1079 -4.4 -5.3 Ornithine carbamoyltransferase compare
PP_4678 -4.3 -16.8 Ketol-acid reductoisomerase compare
PP_0289 -4.3 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0553 -4.3 -6.5 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_2327 -4.3 -9.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -4.2 -19.5 Anthranilate synthase component 1 compare
PP_0293 -4.1 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0557 -4.1 -12.6 Acetoin catabolism regulatory protein compare
PP_5155 -4.1 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5095 -4.1 -3.9 pyrroline-5-carboxylate reductase compare
PP_4724 -4.1 -8.1 Carbamoyl-phosphate synthase small chain compare
PP_5185 -4.0 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -4.0 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5104 -4.0 -8.3 thiazole synthase compare
PP_0083 -3.9 -3.8 tryptophan synthase beta chain compare
PP_1654 -3.9 -2.7 cysteine synthase B compare
PP_5128 -3.8 -7.8 Dihydroxy-acid dehydratase compare
PP_0555 -3.8 -8.3 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
PP_0082 -3.8 -4.5 tryptophan synthase alpha chain compare
PP_1111 -3.7 -7.2 putative Synthetase compare
PP_0556 -3.7 -4.0 Acetoin catabolism protein compare
PP_5014 -3.7 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4487 -3.7 -22.4 acetyl-CoA synthetase compare
PP_0691 -3.7 -6.0 Glutamate 5-kinase compare
PP_5015 -3.6 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -3.6 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0787 -3.5 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1109 -3.5 -13.0 Transcriptional regulator, GntR family compare
PP_4782 -3.5 -5.7 Phosphomethylpyrimidine kinase compare
PP_1025 -3.5 -10.8 2-isopropylmalate synthase compare
PP_2371 -3.4 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5322 -3.4 -8.5 putative metal ion transporter compare
PP_1110 -3.3 -5.4 serine acetyltransferase compare
PP_0735 -3.3 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0164 -3.1 -9.5 conserved protein of unknown function compare
PP_0420 -3.1 -9.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4696 -3.1 -4.3 Nitrogen regulation protein NR(I) compare
PP_1348 -3.1 -6.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0421 -3.1 -6.7 Anthranilate phosphoribosyltransferase compare
PP_2433 -3.0 -3.4 conserved protein of unknown function compare
PP_0963 -3.0 -2.4 putative BolA family protein compare
PP_1233 -2.9 -5.2 sulfurtransferase compare
PP_4700 -2.9 -5.2 pantothenate synthetase compare
PP_0554 -2.9 -9.1 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta compare
PP_5085 -2.8 -9.9 malic enzyme B compare
PP_5303 -2.7 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.7 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_4922 -2.7 -11.6 Phosphomethylpyrimidine synthase compare
PP_0612 -2.3 -7.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_0888 -2.2 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_3946 -2.2 -2.0 HTH-type transcriptional repressor NicR compare
PP_3726 -2.2 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2136 -2.2 -4.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5110 -2.1 -2.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4789 -2.1 -3.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4122 -2.1 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1468 -2.0 -1.9 Tyrosine recombinase XerD compare
PP_3484 -2.0 -5.3 Response regulator receiver protein compare
PP_4684 -1.9 -6.9 conserved protein of unknown function with kinase-like domain compare
PP_2388 -1.9 -4.4 Transporter, LysE family compare
PP_4131 -1.9 -5.2 NADH-quinone oxidoreductase subunit N compare
PP_1912 -1.8 -4.6 Phosphate acyltransferase compare
PP_0893 -1.7 -2.5 ThiJ/PfpI family protein compare
PP_0833 -1.7 -2.6 queuine tRNA-ribosyltransferase compare
PP_2378 -1.7 -2.3 Fe/S biogenesis protein NfuA compare
PP_4004 -1.6 -2.2 DNA translocase FtsK compare
PP_4120 -1.6 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_3505 -1.6 -2.8 conserved protein of unknown function compare
PP_0630 -1.6 -0.9 DNA gyrase inhibitor YacG compare
PP_0319 -1.6 -1.3 conserved protein of unknown function compare
PP_0291 -1.6 -1.9 conserved protein of unknown function compare
PP_2999 -1.5 -1.4 Glyoxalase family protein compare
PP_4130 -1.5 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0611 -1.5 -5.9 Type IV pili biogenesis protein PilE compare
PP_5227 -1.5 -6.4 diaminopimelate decarboxylase compare
PP_4126 -1.5 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_5146 -1.5 -7.3 RNA pyrophosphohydrolase compare
PP_4387 -1.4 -2.6 conserved exported protein of unknown function compare
PP_1224 -1.4 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_1186 -1.4 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_1426 -1.3 -7.4 L-aspartate oxidase compare
PP_2307 -1.3 -1.7 conserved protein of unknown function compare
PP_1826 -1.3 -2.2 Hydrolase, isochorismatase family compare
PP_4803 -1.3 -5.5 D-alanyl-D-alanine carboxypeptidase compare
PP_2820 -1.3 -4.4 HTH-type transcriptional regulator nfxB compare
PP_1673 -1.2 -5.4 cobyrinate a,c-diamide synthase compare
PP_0246 -1.2 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_4993 -1.2 -3.3 Glutathione synthetase compare
PP_1629 -1.2 -2.8 Protein RecA compare
PP_1860 -1.2 -4.1 Organic hydroperoxide resistance transcriptional regulator compare
PP_4058 -1.2 -6.8 1,4-alpha-glucan branching enzyme compare
PP_4681 -1.2 -3.0 conserved protein of unknown function compare
PP_2575 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1675 -1.2 -6.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2615 -1.2 -1.7 hemolysin-coregulated protein compare
PP_4827 -1.2 -7.4 Precorrin-2 C(20)-methyltransferase compare
PP_4099 -1.1 -6.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5453 -1.1 -1.6 conserved protein of unknown function compare
PP_0435 -1.1 -8.2 Peptidase, M23/M37 family compare
PP_4695 -1.1 -4.9 Sensory box histidine kinase compare
PP_1677 -1.1 -4.2 Adenosyl-cobyric acid synthase compare
PP_1410 -1.1 -1.0 conserved protein of unknown function compare
PP_4830 -1.1 -4.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_5145 -1.1 -8.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1733 -1.1 -0.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4964 -1.1 -1.4 D-erythrose 4-phosphate dehydrogenase compare
PP_3102 -1.1 -4.0 conserved protein of unknown function compare
PP_0368 -1.1 -6.0 putative Acyl-CoA dehydrogenase compare
PP_2375 -1.1 -7.0 cobalamin-dependent methionine synthase compare
PP_4977 -1.1 -6.6 5,10-methylenetetrahydrofolate reductase compare
PP_1650 -1.0 -5.5 Sensor protein GacS compare
PP_3539 -1.0 -2.2 putative Transcriptional regulator compare
PP_1987 -1.0 -1.7 Methlytransferase, UbiE/COQ5 family compare
PP_2322 -1.0 -6.7 Major outer membrane lipoprotein compare
PP_1303 -1.0 -6.2 Sulfate adenylyltransferase subunit 2 compare
PP_5109 -1.0 -4.4 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_3244 -1.0 -2.5 Magnesium transporter, MgtC family compare
PP_2324 -1.0 -4.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5035 -1.0 -3.8 Histidine utilization repressor compare
PP_1681 -1.0 -6.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1261 -1.0 -1.4 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_1691 -1.0 -3.0 conserved protein of unknown function compare
PP_3508 -1.0 -2.8 Protein CobW compare
PP_1493 -1.0 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4129 -1.0 -1.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3821 -1.0 -5.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1381 -1.0 -1.0 4-carboxymuconolactone decarboxylase compare
PP_5027 -1.0 -1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0127 -1.0 -3.9 Thiol:disulfide interchange protein compare
PP_1041 -1.0 -1.3 twin arginine protein export complex subunit compare
PP_1836 -1.0 -2.3 putative metal transporter, ZIP family compare
PP_4829 -1.0 -2.3 putative precorrin-3B synthase compare
PP_4480 -1.0 -4.8 arginine N-succinyltransferase, subunit alpha compare
PP_2060 -1.0 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4961 -1.0 -1.0 putative Lipoprotein compare
PP_4363 -0.9 -4.7 Sensor histidine kinase/response regulator compare
PP_4699 -0.9 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0048 -0.9 -1.1 conserved protein of unknown function compare
PP_2168 -0.9 -4.5 Transaldolase compare
PP_2320 -0.9 -6.2 conserved exported protein of unknown function compare
PP_1074 -0.9 -3.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_0948 -0.9 -1.4 Phosphocarrier protein HPr compare
PP_4124 -0.9 -1.5 NADH-quinone oxidoreductase subunit G compare
PP_1022 -0.9 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4826 -0.9 -3.3 Precorrin-3B C17-methyltransferase compare
PP_3507 -0.9 -5.6 Aerobic cobaltochelatase subunit CobN compare
PP_0236 -0.9 -1.6 NAD(P)H-dependent FMN reductase subunit compare
PP_5423 -0.9 -1.7 conserved membrane protein of unknown function compare
PP_3136 -0.9 -3.1 putative O-acetyltransferase compare
PP_3506 -0.9 -1.9 Magnesium chelatase, subunit ChII compare
PP_0801 -0.9 -0.9 conserved exported protein of unknown function compare
PP_5686 -0.9 -2.6 protein of unknown function compare
PP_1672 -0.9 -3.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0141 -0.9 -2.1 putative ABC transporter, ATP-binding protein compare
PP_0063 -0.9 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4546 -0.9 -2.7 ATP-dependent helicase HrpA compare
PP_2309 -0.9 -1.4 conserved protein of unknown function compare
PP_3048 -0.9 -1.6 conserved protein of unknown function compare
PP_2929 -0.9 -5.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5217 -0.9 -6.7 Polyphosphate kinase compare
PP_4260 -0.8 -3.4 conserved protein of unknown function compare
PP_3824 -0.8 -2.0 conserved exported protein of unknown function compare
PP_1304 -0.8 -4.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2903 -0.8 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2414 -0.8 -1.5 conserved exported protein of unknown function compare
PP_2306 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1930 -0.8 -2.6 arsenic resistance transcriptional regulator compare
PP_5338 -0.8 -1.5 aspartate ammonia-lyase compare
PP_1534 -0.8 -1.9 conserved protein of unknown function compare
PP_3810 -0.8 -2.2 conserved protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 2,3-Butanediol in Pseudomonas putida KT2440

For carbon source 2,3-Butanediol across organisms