Experiment set29IT038 for Pseudomonas putida KT2440

Compare to:

Sebacic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0292 -4.9 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0290 -4.6 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.4 -8.5 phosphoserine phosphatase compare
PP_1985 -4.2 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -4.1 -10.4 3-isopropylmalate dehydrogenase compare
PP_0082 -3.8 -3.7 tryptophan synthase alpha chain compare
PP_5289 -3.8 -5.2 Acetylglutamate kinase compare
PP_4679 -3.7 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.7 -14.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0422 -3.5 -5.7 Indole-3-glycerol phosphate synthase compare
PP_4723 -3.4 -15.1 Carbamoyl-phosphate synthase large chain compare
PP_1986 -3.3 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1088 -3.3 -14.0 Argininosuccinate synthase compare
PP_1079 -3.3 -4.9 Ornithine carbamoyltransferase compare
PP_0289 -3.2 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4678 -3.2 -14.4 Ketol-acid reductoisomerase compare
PP_1995 -3.1 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -3.1 -9.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -3.1 -7.9 Argininosuccinate lyase compare
PP_4724 -3.1 -8.3 Carbamoyl-phosphate synthase small chain compare
PP_0083 -3.1 -4.7 tryptophan synthase beta chain compare
PP_0293 -3.0 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5347 -3.0 -11.8 pyruvate carboxylase subunit A compare
PP_5346 -2.9 -9.6 pyruvate carboxylase subunit B compare
PP_5097 -2.8 -13.5 homoserine O-acetyltransferase compare
PP_5128 -2.8 -8.0 Dihydroxy-acid dehydratase compare
PP_4799 -2.8 -5.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0966 -2.8 -9.9 Histidinol dehydrogenase compare
PP_4999 -2.8 -3.3 dihydroorotase-like protein compare
PP_0967 -2.8 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -2.7 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_2327 -2.7 -7.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -2.7 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -2.7 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -2.7 -6.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2253 -2.6 -2.1 Transcriptional regulator, GntR family compare
PP_2001 -2.6 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_3511 -2.6 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_5014 -2.5 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -2.4 -6.4 methionine biosynthesis protein MetW compare
PP_4696 -2.3 -5.5 Nitrogen regulation protein NR(I) compare
PP_1233 -2.2 -4.4 sulfurtransferase compare
PP_0691 -2.2 -5.6 Glutamate 5-kinase compare
PP_0965 -2.2 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2328 -2.2 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_0421 -2.2 -6.1 Anthranilate phosphoribosyltransferase compare
PP_5248 -2.1 -1.2 putative hydrolase compare
PP_0735 -2.1 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4940 -2.0 -6.3 Putative glycosyltransferase compare
PP_5348 -1.9 -7.9 Transcriptional regulator, LysR family compare
PP_2371 -1.9 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0888 -1.9 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_4364 -1.9 -3.7 putative Anti-sigma F factor antagonist compare
PP_2378 -1.9 -2.7 Fe/S biogenesis protein NfuA compare
PP_0291 -1.8 -2.1 conserved protein of unknown function compare
PP_0905 -1.8 -1.7 conserved exported protein of unknown function compare
PP_1025 -1.8 -7.6 2-isopropylmalate synthase compare
PP_4296 -1.8 -1.6 conserved exported protein of unknown function compare
PP_2370 -1.7 -4.1 conserved protein of unknown function compare
PP_4700 -1.6 -3.8 pantothenate synthetase compare
PP_5350 -1.6 -4.1 Transcriptional regulator, RpiR family compare
PP_5303 -1.6 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0417 -1.6 -11.4 Anthranilate synthase component 1 compare
PP_2433 -1.6 -2.8 conserved protein of unknown function compare
PP_1099 -1.6 -2.7 Cold shock protein CapB compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_5015 -1.6 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1654 -1.5 -2.5 cysteine synthase B compare
PP_0787 -1.5 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2336 -1.4 -1.9 aconitate hydratase 1 compare
PP_4004 -1.4 -1.9 DNA translocase FtsK compare
PP_2615 -1.4 -2.6 hemolysin-coregulated protein compare
PP_5594 -1.4 -1.8 conserved protein of unknown function compare
PP_2740 -1.3 -1.5 Transcriptional regulator, MerR family compare
PP_2302 -1.3 -3.0 DNA-binding, ATP-dependent protease compare
PP_1362 -1.3 -2.7 pyruvate kinase II compare
PP_1076 -1.3 -6.4 aquaglyceroporin compare
PP_0719 -1.3 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_4699 -1.3 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1493 -1.3 -4.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4782 -1.2 -2.9 Phosphomethylpyrimidine kinase compare
PP_1568 -1.2 -1.0 conserved protein of unknown function compare
PP_0653 -1.2 -1.2 conserved protein of unknown function compare
PP_2136 -1.2 -3.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0848 -1.2 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5453 -1.2 -1.2 conserved protein of unknown function compare
PP_3821 -1.2 -6.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0627 -1.2 -1.9 conserved protein of unknown function compare
PP_1468 -1.1 -1.2 Tyrosine recombinase XerD compare
PP_2883 -1.1 -1.8 conserved protein of unknown function compare
PP_2168 -1.1 -4.9 Transaldolase compare
PP_0420 -1.1 -5.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4964 -1.1 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4943 -1.1 -0.9 putative Glycosyl transferase compare
PP_3484 -1.1 -2.7 Response regulator receiver protein compare
PP_3532 -1.1 -1.2 Transcriptional regulator, AsnC family compare
PP_5571 -1.1 -1.4 conserved protein of unknown function compare
PP_1544 -1.1 -1.7 conserved protein of unknown function compare
PP_2633 -1.0 -1.0 conserved protein of unknown function compare
PP_2631 -1.0 -1.1 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2000 -1.0 -1.0 amidophosphoribosyl transferase compare
PP_1075 -1.0 -6.4 glycerol kinase compare
PP_4124 -1.0 -1.0 NADH-quinone oxidoreductase subunit G compare
PP_4363 -1.0 -6.1 Sensor histidine kinase/response regulator compare
PP_5748 -1.0 -1.4 cytochrome c heme lyase subunit compare
PP_4470 -1.0 -1.8 putative transcriptional regulator (Arc domain-containing) compare
PP_0339 -1.0 -4.0 Pyruvate dehydrogenase E1 component compare
PP_1309 -1.0 -4.0 conserved exported protein of unknown function compare
PP_1224 -1.0 -4.0 periplasmic subunit of the TolQRA transport system compare
PP_5654 -0.9 -1.6 putative phosphotriesterase compare
PP_0164 -0.9 -4.8 conserved protein of unknown function compare
PP_0363 -0.9 -6.4 8-amino-7-oxononanoate synthase compare
PP_3105 -0.9 -1.8 conserved membrane protein of unknown function compare
PP_3770 -0.9 -3.6 conserved protein of unknown function compare
PP_1787 -0.9 -2.4 conserved protein of unknown function compare
PP_2999 -0.9 -1.0 Glyoxalase family protein compare
PP_2137 -0.9 -2.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_1022 -0.9 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_0362 -0.9 -5.7 Biotin synthase compare
PP_4984 -0.9 -5.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1629 -0.9 -2.0 Protein RecA compare
PP_1473 -0.9 -2.8 conserved protein of unknown function compare
PP_1300 -0.9 -2.1 putative amino acid ABC transporter - ATP-binding subunit compare
PP_3043 -0.9 -0.6 conserved protein of unknown function compare
PP_0364 -0.8 -3.9 pimeloyl-[acp] methyl ester esterase compare
PP_2581 -0.8 -1.2 conserved protein of unknown function compare
PP_0585 -0.8 -2.2 putative metal-sensitive transcriptional regulator, MerR family compare
PP_3908 -0.8 -3.3 conserved protein of unknown function compare
PP_4793 -0.8 -2.0 conserved protein of unknown function compare
PP_5331 -0.8 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_2345 -0.8 -1.8 conserved exported protein of unknown function compare
PP_1676 -0.8 -2.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3790 -0.8 -4.0 diaminopimelate epimerase compare
PP_2675 -0.8 -2.5 Cytochrome c-type protein compare
PP_1303 -0.8 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_1994 -0.8 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_0366 -0.8 -3.5 dethiobiotin synthetase compare
PP_1426 -0.8 -5.4 L-aspartate oxidase compare
PP_4480 -0.8 -4.1 arginine N-succinyltransferase, subunit alpha compare
PP_4126 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_5338 -0.8 -1.4 aspartate ammonia-lyase compare
PP_5702 -0.8 -2.5 conserved protein of unknown function compare
PP_2018 -0.8 -3.7 adhesin-associated BNR repeat protein (from data) compare
PP_3443 -0.8 -4.2 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4131 -0.8 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_4130 -0.8 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4829 -0.8 -1.8 putative precorrin-3B synthase compare
PP_4689 -0.8 -2.3 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare
PP_2846 -0.8 -3.2 urease accessory protein compare
PP_5216 -0.7 -2.5 exopolyphosphatase compare
PP_0376 -0.7 -3.5 Coenzyme PQQ synthesis protein E compare
PP_4917 -0.7 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1729 -0.7 -0.8 conserved protein of unknown function compare
PP_5328 -0.7 -2.4 putative phosphate transport system permease protein compare
PP_3506 -0.7 -2.3 Magnesium chelatase, subunit ChII compare
PP_4938 -0.7 -3.9 putative Glycosyl transferase compare
PP_2442 -0.7 -1.3 conserved protein of unknown function, DUF480 family compare
PP_4387 -0.7 -1.7 conserved exported protein of unknown function compare
PP_2073 -0.7 -1.9 Acetyltransferase, GNAT family compare
PP_3055 -0.7 -3.1 Pyocin R2_PP, tail formation protein compare
PP_4098 -0.7 -1.0 UvrABC system protein C compare
PP_0435 -0.7 -5.5 Peptidase, M23/M37 family compare
PP_4891 -0.7 -2.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5090 -0.7 -1.1 putative cell division protein compare
PP_2132 -0.7 -2.1 Universal stress protein compare
PP_0090 -0.7 -2.4 conserved exported protein of unknown function compare
PP_5095 -0.7 -1.2 pyrroline-5-carboxylate reductase compare
PP_1512 -0.7 -1.8 conserved protein of unknown function compare
PP_2655 -0.7 -1.8 conserved protein of unknown function compare
PP_2616 -0.7 -1.7 conserved protein of unknown function compare
PP_t10 -0.7 -0.9 tRNA-Pro compare
PP_5110 -0.7 -0.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3603 -0.7 -3.2 Transcriptional regulator, GntR family compare
PP_4997 -0.7 -0.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5176 -0.7 -1.4 conserved protein of unknown function compare
PP_0152 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0365 -0.6 -4.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2306 -0.6 -1.4 conserved exported protein of unknown function compare
PP_1812 -0.6 -1.6 conserved protein of unknown function compare
PP_2067 -0.6 -2.0 putative EmrB/QacA family drug resistance transporter compare
PP_1435 -0.6 -2.8 DNA repair protein RecO compare
PP_4797 -0.6 -1.0 conserved protein of unknown function compare
PP_4317 -0.6 -1.4 conserved protein of unknown function compare
PP_1404 -0.6 -1.4 conserved protein of unknown function compare
PP_4811 -0.6 -2.9 Gamma-glutamyl phosphate reductase compare
PP_5500 -0.6 -1.4 protein of unknown function compare
PP_5495 -0.6 -1.6 protein of unknown function compare
PP_2373 -0.6 -0.9 conserved protein of unknown function compare
PP_0893 -0.6 -1.4 ThiJ/PfpI family protein compare
PP_2504 -0.6 -1.3 putative tautomerase K2 compare
PP_1051 -0.6 -2.5 Type II secretion pathway protein XcpV compare
PP_4988 -0.6 -3.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_t57 -0.6 -2.1 tRNA-Arg compare
PP_2756 -0.6 -1.5 conserved protein of unknown function compare
PP_0513 -0.6 -1.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4133 -0.6 -1.3 Transcriptional regulator-related protein compare
PP_4922 -0.6 -3.8 Phosphomethylpyrimidine synthase compare
PP_4897 -0.6 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PP_4546 -0.6 -1.8 ATP-dependent helicase HrpA compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source Sebacic acid across organisms