Experiment set29IT035 for Pseudomonas putida KT2440

Compare to:

Glutaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -5.6 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1088 -5.5 -9.3 Argininosuccinate synthase compare
PP_4364 -5.3 -5.2 putative Anti-sigma F factor antagonist compare
PP_5075 -5.3 -11.3 glutamate synthase (NADPH) beta subunit compare
PP_5095 -5.3 -3.6 pyrroline-5-carboxylate reductase compare
PP_4723 -5.2 -19.7 Carbamoyl-phosphate synthase large chain compare
PP_2909 -5.2 -8.0 glutarate hydroxylase (from data) compare
PP_3821 -5.2 -9.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0967 -5.1 -10.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5076 -4.9 -17.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1400 -4.8 -14.0 Alpha-ketoglutarate permease compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_1401 -4.7 -7.8 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1995 -4.7 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4724 -4.6 -10.5 Carbamoyl-phosphate synthase small chain compare
PP_0421 -4.5 -7.5 Anthranilate phosphoribosyltransferase compare
PP_0292 -4.5 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4890 -4.5 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -4.5 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0289 -4.4 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -4.4 -13.5 homoserine O-acetyltransferase compare
PP_0417 -4.4 -19.2 Anthranilate synthase component 1 compare
PP_1402 -4.4 -11.8 C4-dicarboxylate transport sensor protein compare
PP_4909 -4.3 -8.3 phosphoserine phosphatase compare
PP_0691 -4.2 -6.8 Glutamate 5-kinase compare
PP_4680 -4.2 -14.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -4.2 -6.4 Argininosuccinate lyase compare
PP_3511 -4.1 -11.0 Branched-chain-amino-acid aminotransferase compare
PP_5322 -4.1 -6.9 putative metal ion transporter compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_5155 -4.1 -8.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0420 -4.0 -13.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0787 -4.0 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1988 -3.9 -10.3 3-isopropylmalate dehydrogenase compare
PP_4678 -3.9 -13.5 Ketol-acid reductoisomerase compare
PP_0966 -3.9 -11.7 Histidinol dehydrogenase compare
PP_5098 -3.8 -10.7 methionine biosynthesis protein MetW compare
PP_2371 -3.8 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1985 -3.8 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_4940 -3.8 -3.7 Putative glycosyltransferase compare
PP_2910 -3.7 -8.2 L-2-hydroxyglutarate oxidase compare
PP_1986 -3.6 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_5015 -3.6 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2328 -3.5 -3.4 Phosphoadenosine phosphosulfate reductase compare
PP_2001 -3.5 -10.7 O-succinylhomoserine sulfhydrylase compare
PP_0083 -3.4 -4.1 tryptophan synthase beta chain compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -3.3 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0965 -3.3 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -3.3 -5.0 Acetylglutamate kinase compare
PP_5128 -3.3 -7.9 Dihydroxy-acid dehydratase compare
PP_4696 -3.2 -3.8 Nitrogen regulation protein NR(I) compare
PP_1079 -3.2 -4.8 Ornithine carbamoyltransferase compare
PP_2327 -3.1 -8.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0888 -3.1 -3.6 Photosynthetic apparatus regulatory protein RegA compare
PP_3484 -3.0 -6.4 Response regulator receiver protein compare
PP_4679 -3.0 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1468 -3.0 -2.0 Tyrosine recombinase XerD compare
PP_1025 -3.0 -10.0 2-isopropylmalate synthase compare
PP_5303 -3.0 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4943 -2.9 -2.0 putative Glycosyl transferase compare
PP_1778 -2.9 -6.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4271 -2.9 -1.3 conserved protein of unknown function compare
PP_0339 -2.8 -7.0 Pyruvate dehydrogenase E1 component compare
PP_1110 -2.8 -7.5 serine acetyltransferase compare
PP_4700 -2.7 -5.2 pantothenate synthetase compare
PP_2370 -2.7 -3.9 conserved protein of unknown function compare
PP_1231 -2.7 -6.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0319 -2.6 -2.1 conserved protein of unknown function compare
PP_2307 -2.5 -2.0 conserved protein of unknown function compare
PP_1233 -2.4 -4.6 sulfurtransferase compare
PP_1804 -2.4 -13.3 Glycosyl transferase WbpL compare
PP_0164 -2.4 -8.7 conserved protein of unknown function compare
PP_4789 -2.4 -4.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4828 -2.4 -1.5 Precorrin-8X methylmutase compare
PP_5104 -2.3 -6.9 thiazole synthase compare
PP_4874 -2.3 -1.6 50S ribosomal protein L9 compare
PP_4952 -2.2 -1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0593 -2.2 -1.7 putative ribosome-binding factor compare
PP_1111 -2.2 -7.5 putative Synthetase compare
PP_4098 -2.1 -1.4 UvrABC system protein C compare
PP_0435 -2.1 -15.0 Peptidase, M23/M37 family compare
PP_1801 -2.0 -10.4 Glycosyl transferase WbpY compare
PP_1776 -2.0 -13.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0291 -2.0 -3.8 conserved protein of unknown function compare
PP_4936 -1.9 -6.4 O-antigen polymerase compare
PP_1780 -1.9 -14.0 putative mannosyltransferase compare
PP_1802 -1.8 -12.0 glycosyl transferase compare
PP_1109 -1.8 -9.7 Transcriptional regulator, GntR family compare
PP_1800 -1.8 -9.3 Oxidoreductase Rmd compare
PP_2499 -1.8 -1.5 conserved protein of unknown function compare
PP_3105 -1.8 -2.2 conserved membrane protein of unknown function compare
PP_1664 -1.8 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1805 -1.7 -12.8 Polysaccharide biosynthesis protein compare
PP_1799 -1.7 -9.8 GDP-mannose 4,6-dehydratase compare
PP_4938 -1.7 -7.5 putative Glycosyl transferase compare
PP_4782 -1.7 -2.5 Phosphomethylpyrimidine kinase compare
PP_0547 -1.7 -4.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_0801 -1.6 -1.4 conserved exported protein of unknown function compare
PP_1553 -1.6 -2.4 conserved protein of unknown function compare
PP_4699 -1.6 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4937 -1.5 -3.7 toluene tolerance protein compare
PP_0063 -1.5 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4004 -1.5 -2.1 DNA translocase FtsK compare
PP_1654 -1.5 -2.5 cysteine synthase B compare
PP_5350 -1.5 -3.5 Transcriptional regulator, RpiR family compare
PP_4136 -1.5 -1.2 Transcriptional regulator, LuxR family compare
PP_4695 -1.5 -7.6 Sensory box histidine kinase compare
PP_5028 -1.5 -2.4 proline iminopeptidase compare
PP_1224 -1.5 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_5654 -1.4 -1.9 putative phosphotriesterase compare
PP_5085 -1.4 -6.9 malic enzyme B compare
PP_3790 -1.4 -7.5 diaminopimelate epimerase compare
PP_3460 -1.4 -2.3 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1779 -1.4 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5705 -1.3 -1.2 protein of unknown function compare
PP_1403 -1.3 -6.6 periplasmic beta-D-glucoside glucohydrolase compare
PP_0406 -1.3 -4.0 Nucleotidyltransferase family protein compare
PP_0914 -1.3 -7.6 GGDEF domain protein compare
PP_5090 -1.3 -2.4 putative cell division protein compare
PP_1679 -1.3 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4008 -1.3 -5.2 ATP-dependent serine protease compare
PP_3098 -1.3 -1.3 conserved protein of unknown function compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4941 -1.2 -5.7 conserved exported protein of unknown function compare
PP_4296 -1.2 -1.5 conserved exported protein of unknown function compare
PP_2253 -1.2 -1.0 Transcriptional regulator, GntR family compare
PP_4964 -1.2 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4917 -1.1 -3.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2028 -1.1 -3.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_5035 -1.1 -3.8 Histidine utilization repressor compare
PP_0152 -1.1 -2.4 conserved exported protein of unknown function compare
PP_4922 -1.1 -6.3 Phosphomethylpyrimidine synthase compare
PP_5681 -1.1 -2.5 conserved protein of unknown function compare
PP_0001 -1.1 -1.3 probable chromosome-partitioning protein compare
PP_5054 -1.1 -1.5 glutaredoxin 3 compare
PP_4891 -1.1 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3506 -1.1 -3.9 Magnesium chelatase, subunit ChII compare
PP_1629 -1.1 -2.5 Protein RecA compare
PP_0948 -1.1 -1.6 Phosphocarrier protein HPr compare
PP_0246 -1.1 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_2322 -1.1 -8.4 Major outer membrane lipoprotein compare
PP_4126 -1.1 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_t10 -1.0 -2.0 tRNA-Pro compare
PP_2323 -1.0 -6.3 conserved protein of unknown function compare
PP_5628 -1.0 -1.9 conserved protein of unknown function compare
PP_0346 -1.0 -6.4 putative Heptose kinase WapQ compare
PP_4058 -1.0 -6.5 1,4-alpha-glucan branching enzyme compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_5328 -1.0 -3.3 putative phosphate transport system permease protein compare
PP_1355 -1.0 -8.8 Muropeptide permease AmpG compare
PP_1381 -1.0 -1.1 4-carboxymuconolactone decarboxylase compare
PP_1303 -1.0 -5.9 Sulfate adenylyltransferase subunit 2 compare
PP_1128 -1.0 -1.7 OmpA family protein compare
PP_1493 -1.0 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4122 -1.0 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2302 -1.0 -2.3 DNA-binding, ATP-dependent protease compare
PP_4387 -1.0 -1.5 conserved exported protein of unknown function compare
PP_2000 -1.0 -1.1 amidophosphoribosyl transferase compare
PP_0236 -0.9 -1.1 NAD(P)H-dependent FMN reductase subunit compare
PP_4835 -0.9 -1.7 conserved exported protein of unknown function compare
PP_5644 -0.9 -2.2 conserved membrane protein of unknown function compare
PP_2388 -0.9 -2.7 Transporter, LysE family compare
PP_2336 -0.9 -1.6 aconitate hydratase 1 compare
PP_0303 -0.9 -2.3 dehydrocarnitine cleavage enzyme compare
PP_1764 -0.9 -4.1 Phosphoglycolate phosphatase 2 compare
PP_5279 -0.9 -2.1 conserved protein of unknown function compare
PP_1912 -0.9 -3.1 Phosphate acyltransferase compare
PP_1348 -0.9 -3.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3434 -0.9 -1.1 conserved protein of unknown function compare
PP_0834 -0.9 -1.8 Sec translocation complex subunit YajC compare
PP_4515 -0.9 -3.0 Transcriptional regulator, MarR family compare
PP_1862 -0.9 -2.0 conserved membrane protein of unknown function compare
PP_0434 -0.9 -5.8 Anhydro-N-acetylmuramic acid kinase compare
PP_2306 -0.9 -1.8 conserved exported protein of unknown function compare
PP_0833 -0.9 -1.9 queuine tRNA-ribosyltransferase compare
PP_5230 -0.9 -2.0 Tyrosine recombinase XerC compare
PP_t12 -0.9 -0.8 tRNA-Thr compare
PP_4482 -0.9 -2.4 Transcriptional regulator, AraC family compare
PP_2677 -0.9 -2.5 conserved exported protein of unknown function compare
PP_2320 -0.9 -6.5 conserved exported protein of unknown function compare
PP_3637 -0.8 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2999 -0.8 -1.0 Glyoxalase family protein compare
PP_4379 -0.8 -3.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5295 -0.8 -1.0 conserved protein of unknown function compare
PP_4480 -0.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_4830 -0.8 -2.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_3539 -0.8 -2.1 putative Transcriptional regulator compare
PP_1216 -0.8 -0.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4481 -0.8 -4.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3374 -0.8 -2.5 conserved protein of unknown function compare
PP_0856 -0.8 -2.0 conserved lipoprotein of unknown function compare
PP_0362 -0.8 -5.2 Biotin synthase compare
PP_2390 -0.8 -2.9 Transcriptional regulator, LysR family compare
PP_2027 -0.8 -2.4 conserved exported protein of unknown function compare
PP_2441 -0.8 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Glutaric acid in Pseudomonas putida KT2440

For carbon source Glutaric acid across organisms