Experiment set29IT034 for Pseudomonas putida KT2440

Compare to:

Succinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -4.6 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0290 -4.4 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -4.1 -4.8 Ornithine carbamoyltransferase compare
PP_5185 -4.1 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -4.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1985 -3.8 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_0339 -3.7 -5.7 Pyruvate dehydrogenase E1 component compare
PP_0083 -3.7 -4.4 tryptophan synthase beta chain compare
PP_0082 -3.6 -4.3 tryptophan synthase alpha chain compare
PP_0184 -3.5 -6.8 Argininosuccinate lyase compare
PP_4723 -3.5 -19.3 Carbamoyl-phosphate synthase large chain compare
PP_1088 -3.5 -13.7 Argininosuccinate synthase compare
PP_4678 -3.4 -15.8 Ketol-acid reductoisomerase compare
PP_1988 -3.4 -10.1 3-isopropylmalate dehydrogenase compare
PP_4799 -3.4 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5075 -3.3 -13.9 glutamate synthase (NADPH) beta subunit compare
PP_5155 -3.3 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -3.2 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0422 -3.2 -6.1 Indole-3-glycerol phosphate synthase compare
PP_4724 -3.2 -10.5 Carbamoyl-phosphate synthase small chain compare
PP_5289 -3.1 -5.2 Acetylglutamate kinase compare
PP_3821 -3.1 -12.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4999 -3.0 -3.0 dihydroorotase-like protein compare
PP_4890 -3.0 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -3.0 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4680 -3.0 -12.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3098 -2.9 -1.9 conserved protein of unknown function compare
PP_1188 -2.8 -7.9 C4-dicarboxylate transport protein conserved
PP_4909 -2.8 -8.3 phosphoserine phosphatase compare
PP_1779 -2.8 -6.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0967 -2.7 -9.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4700 -2.7 -5.4 pantothenate synthetase compare
PP_5076 -2.7 -16.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_5128 -2.7 -6.5 Dihydroxy-acid dehydratase compare
PP_3999 -2.6 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1025 -2.6 -9.7 2-isopropylmalate synthase compare
PP_4940 -2.6 -6.3 Putative glycosyltransferase compare
PP_1778 -2.6 -5.7 Lipopolysaccharide ABC export system, permease protein compare
PP_0421 -2.5 -7.8 Anthranilate phosphoribosyltransferase compare
PP_0417 -2.5 -15.7 Anthranilate synthase component 1 compare
PP_0965 -2.5 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1995 -2.4 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -2.4 -10.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -2.4 -7.8 methionine biosynthesis protein MetW compare
PP_5015 -2.3 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -2.3 -7.7 Branched-chain-amino-acid aminotransferase compare
PP_4679 -2.2 -6.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -2.2 -11.4 homoserine O-acetyltransferase compare
PP_0263 -2.2 -8.8 C4-dicarboxylate transport transcriptional regulatory protein conserved
PP_0691 -2.2 -5.6 Glutamate 5-kinase compare
PP_0966 -2.1 -8.0 Histidinol dehydrogenase compare
PP_2327 -2.1 -6.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2328 -2.1 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_1780 -2.1 -15.7 putative mannosyltransferase compare
PP_2001 -2.0 -8.8 O-succinylhomoserine sulfhydrylase compare
PP_4098 -2.0 -1.4 UvrABC system protein C compare
PP_1801 -2.0 -11.5 Glycosyl transferase WbpY compare
PP_1804 -2.0 -9.9 Glycosyl transferase WbpL compare
PP_1186 -2.0 -2.2 two component system DNA-binding transcriptional dual regulator compare
PP_5085 -2.0 -8.0 malic enzyme B compare
PP_1799 -2.0 -11.2 GDP-mannose 4,6-dehydratase compare
PP_4936 -2.0 -6.7 O-antigen polymerase compare
PP_5095 -2.0 -3.2 pyrroline-5-carboxylate reductase compare
PP_1776 -1.9 -13.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1802 -1.9 -13.0 glycosyl transferase compare
PP_4938 -1.9 -7.0 putative Glycosyl transferase compare
PP_2999 -1.9 -1.7 Glyoxalase family protein compare
PP_1233 -1.9 -4.1 sulfurtransferase compare
PP_1805 -1.8 -12.3 Polysaccharide biosynthesis protein compare
PP_1800 -1.8 -8.9 Oxidoreductase Rmd compare
PP_1231 -1.8 -4.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5303 -1.8 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0547 -1.7 -4.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4696 -1.7 -4.8 Nitrogen regulation protein NR(I) compare
PP_0787 -1.7 -2.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5279 -1.7 -3.3 conserved protein of unknown function compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_5594 -1.6 -2.3 conserved protein of unknown function compare
PP_0291 -1.6 -3.1 conserved protein of unknown function compare
PP_0627 -1.6 -2.0 conserved protein of unknown function compare
PP_5328 -1.5 -4.3 putative phosphate transport system permease protein compare
PP_1702 -1.5 -3.3 Recombination-associated protein RdgC compare
PP_1344 -1.5 -2.2 conserved protein of unknown function compare
PP_5359 -1.4 -1.8 CobW/P47K family protein compare
PP_0306 -1.4 -2.8 conserved protein of unknown function compare
PP_1293 -1.4 -1.3 molybdopterin synthase small subunit compare
PP_4895 -1.4 -2.6 tRNA dimethylallyltransferase compare
PP_4782 -1.3 -3.6 Phosphomethylpyrimidine kinase compare
PP_5322 -1.3 -6.0 putative metal ion transporter compare
PP_4356 -1.3 -2.4 Flagellar protein FliO compare
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0164 -1.3 -6.2 conserved protein of unknown function compare
PP_2322 -1.3 -9.8 Major outer membrane lipoprotein compare
PP_5331 -1.3 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_2847 -1.3 -2.1 Urease accessory protein UreJ compare
PP_2899 -1.2 -1.0 conserved exported protein of unknown function compare
PP_1912 -1.2 -4.4 Phosphate acyltransferase compare
PP_3244 -1.2 -3.5 Magnesium transporter, MgtC family compare
PP_2378 -1.2 -1.9 Fe/S biogenesis protein NfuA compare
PP_5090 -1.2 -2.7 putative cell division protein compare
PP_5014 -1.2 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0063 -1.2 -2.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5248 -1.2 -1.0 putative hydrolase compare
PP_2442 -1.2 -1.9 conserved protein of unknown function, DUF480 family compare
PP_4943 -1.2 -1.0 putative Glycosyl transferase compare
PP_0264 -1.1 -4.1 Sensor histidine kinase conserved
PP_0435 -1.1 -9.5 Peptidase, M23/M37 family compare
PP_4789 -1.1 -3.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2581 -1.1 -1.3 conserved protein of unknown function compare
PP_2370 -1.1 -2.2 conserved protein of unknown function compare
PP_1632 -1.1 -1.3 conserved protein of unknown function compare
PP_1553 -1.1 -1.8 conserved protein of unknown function compare
PP_4699 -1.1 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2018 -1.1 -3.9 adhesin-associated BNR repeat protein (from data) compare
PP_3808 -1.1 -2.7 Antibiotic synthesis protein MbtH compare
PP_1664 -1.0 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4964 -1.0 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2390 -1.0 -4.5 Transcriptional regulator, LysR family compare
PP_2307 -1.0 -1.1 conserved protein of unknown function compare
PP_0246 -1.0 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_1493 -1.0 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3840 -1.0 -1.0 conserved protein of unknown function compare
PP_0914 -1.0 -6.1 GGDEF domain protein compare
PP_0852 -1.0 -1.9 Transcriptional regulator, Cro/CI family compare
PP_1224 -1.0 -3.9 periplasmic subunit of the TolQRA transport system compare
PP_4136 -1.0 -1.0 Transcriptional regulator, LuxR family compare
PP_0362 -0.9 -5.7 Biotin synthase compare
PP_1110 -0.9 -4.0 serine acetyltransferase compare
PP_5701 -0.9 -0.9 conserved protein of unknown function compare
PP_4941 -0.9 -4.9 conserved exported protein of unknown function compare
PP_3904 -0.9 -2.6 conserved protein of unknown function compare
PP_5114 -0.9 -0.9 putative adenine methyltransferase compare
PP_5054 -0.9 -1.4 glutaredoxin 3 compare
PP_4364 -0.9 -2.0 putative Anti-sigma F factor antagonist compare
PP_0948 -0.9 -1.5 Phosphocarrier protein HPr compare
PP_2073 -0.9 -2.5 Acetyltransferase, GNAT family compare
PP_2500 -0.9 -2.1 conserved protein of unknown function compare
PP_3824 -0.9 -2.0 conserved exported protein of unknown function compare
PP_0040 -0.9 -2.8 hypothetical protein compare
PP_1629 -0.9 -2.0 Protein RecA compare
PP_1435 -0.9 -3.5 DNA repair protein RecO compare
PP_2256 -0.9 -2.4 Transcriptional regulator, Cro/CI family compare
PP_0025 -0.9 -0.9 hypothetical protein compare
PP_2388 -0.9 -2.3 Transporter, LysE family compare
PP_4265 -0.9 -1.6 DNA-binding transcriptional dual regulator compare
PP_4803 -0.9 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PP_0959 -0.9 -2.0 phospholipid ABC transporter compare
PP_1679 -0.9 -3.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1676 -0.9 -3.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0833 -0.9 -1.7 queuine tRNA-ribosyltransferase compare
PP_2441 -0.9 -1.8 conserved protein of unknown function compare
PP_4018 -0.9 -2.9 Acetyltransferase, GNAT family compare
PP_3715 -0.8 -2.7 Muconate cycloisomerase 1 compare
PP_2414 -0.8 -1.3 conserved exported protein of unknown function compare
PP_3110 -0.8 -2.0 protein of unknown function compare
PP_0855 -0.8 -2.1 conserved protein of unknown function compare
PP_4262 -0.8 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2575 -0.8 -0.7 conserved exported protein of unknown function compare
PP_2323 -0.8 -4.7 conserved protein of unknown function compare
PP_5104 -0.8 -4.0 thiazole synthase compare
PP_5571 -0.8 -1.2 conserved protein of unknown function compare
PP_1672 -0.8 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0536 -0.8 -2.5 conserved protein of unknown function compare
PP_5471 -0.8 -1.0 putative response regulator receiver protein compare
PP_1994 -0.8 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_0765 -0.8 -6.1 putative adhesin (DUF1302) (from data) compare
PP_4481 -0.8 -3.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3506 -0.8 -2.0 Magnesium chelatase, subunit ChII compare
PP_4502 -0.8 -3.0 putative enzyme compare
PP_0366 -0.8 -3.1 dethiobiotin synthetase compare
PP_0766 -0.8 -5.9 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0856 -0.8 -1.6 conserved lipoprotein of unknown function compare
PP_1426 -0.8 -5.1 L-aspartate oxidase compare
PP_3318 -0.8 -1.1 conserved protein of unknown function compare
PP_4837 -0.7 -1.7 conserved protein of unknown function compare
PP_1803 -0.7 -5.3 UDP-sugar epimerase compare
PP_5329 -0.7 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0927 -0.7 -5.1 aromatic amino acid transport protein compare
PP_4824 -0.7 -2.7 Sensor histidine kinase/response regulator compare
PP_4480 -0.7 -3.4 arginine N-succinyltransferase, subunit alpha compare
PP_1761 -0.7 -4.7 diguanylate cyclase with phosphodiesterase domain compare
PP_0596 -0.7 -4.2 Omega-amino acid--pyruvate aminotransferase compare
PP_3484 -0.7 -2.1 Response regulator receiver protein compare
PP_4206 -0.7 -3.5 Major facilitator family transporter compare
PP_4133 -0.7 -2.1 Transcriptional regulator-related protein compare
PP_2019 -0.7 -5.6 adhesin-associated MmpL efflux pump (from data) compare
PP_3245 -0.7 -0.7 conserved protein of unknown function compare
PP_0065 -0.7 -1.9 NAD-binding component of TrK potassium transporter compare
PP_0127 -0.7 -3.7 Thiol:disulfide interchange protein compare
PP_4363 -0.7 -4.0 Sensor histidine kinase/response regulator compare
PP_2958 -0.7 -2.6 Glutaredoxin compare
PP_2000 -0.7 -0.9 amidophosphoribosyl transferase compare
PP_1783 -0.7 -0.5 dTDP-glucose pyrophosphorylase compare
PP_2090 -0.7 -1.2 Uroporphyrinogen-III C-methyltransferase compare
PP_3411 -0.7 -1.2 conserved protein of unknown function compare
PP_1898 -0.7 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2947 -0.7 -2.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4004 -0.7 -1.3 DNA translocase FtsK compare
PP_4697 -0.7 -2.4 poly(A) polymerase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Succinic Acid in Pseudomonas putida KT2440

For carbon source Succinic Acid across organisms