Experiment set29IT033 for Pseudomonas putida KT2440

Compare to:

Succinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.2 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -4.6 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0292 -4.0 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1088 -3.8 -13.2 Argininosuccinate synthase compare
PP_0184 -3.7 -6.7 Argininosuccinate lyase compare
PP_5289 -3.7 -5.0 Acetylglutamate kinase compare
PP_4723 -3.7 -19.9 Carbamoyl-phosphate synthase large chain compare
PP_5185 -3.6 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -3.5 -8.1 3-isopropylmalate dehydrogenase compare
PP_3821 -3.5 -12.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5075 -3.5 -13.8 glutamate synthase (NADPH) beta subunit compare
PP_0083 -3.4 -4.7 tryptophan synthase beta chain compare
PP_0082 -3.4 -4.6 tryptophan synthase alpha chain compare
PP_4909 -3.4 -8.6 phosphoserine phosphatase compare
PP_0291 -3.3 -5.4 conserved protein of unknown function compare
PP_4724 -3.3 -8.7 Carbamoyl-phosphate synthase small chain compare
PP_4799 -3.3 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4940 -3.2 -4.8 Putative glycosyltransferase compare
PP_1188 -3.1 -8.0 C4-dicarboxylate transport protein conserved
PP_3999 -3.1 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4890 -3.0 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1804 -3.0 -14.2 Glycosyl transferase WbpL compare
PP_4680 -3.0 -13.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5076 -3.0 -16.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_4679 -3.0 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -3.0 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -3.0 -14.3 Ketol-acid reductoisomerase compare
PP_1985 -3.0 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_1779 -3.0 -6.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4364 -2.9 -3.3 putative Anti-sigma F factor antagonist compare
PP_4943 -2.9 -2.0 putative Glycosyl transferase compare
PP_0263 -2.9 -9.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5701 -2.8 -2.1 conserved protein of unknown function compare
PP_5155 -2.8 -6.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -2.8 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5303 -2.8 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0421 -2.7 -8.3 Anthranilate phosphoribosyltransferase compare
PP_1800 -2.7 -12.8 Oxidoreductase Rmd compare
PP_0420 -2.7 -10.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4999 -2.7 -3.2 dihydroorotase-like protein compare
PP_1025 -2.7 -9.4 2-isopropylmalate synthase compare
PP_0966 -2.6 -8.9 Histidinol dehydrogenase compare
PP_4938 -2.6 -8.6 putative Glycosyl transferase compare
PP_0967 -2.6 -7.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0339 -2.6 -7.2 Pyruvate dehydrogenase E1 component compare
PP_1802 -2.5 -15.9 glycosyl transferase compare
PP_5015 -2.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0547 -2.4 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1776 -2.4 -15.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0422 -2.4 -4.1 Indole-3-glycerol phosphate synthase compare
PP_0417 -2.4 -14.6 Anthranilate synthase component 1 compare
PP_1801 -2.4 -12.3 Glycosyl transferase WbpY compare
PP_1780 -2.3 -17.5 putative mannosyltransferase compare
PP_1799 -2.3 -12.5 GDP-mannose 4,6-dehydratase compare
PP_5098 -2.3 -8.4 methionine biosynthesis protein MetW compare
PP_5128 -2.3 -7.6 Dihydroxy-acid dehydratase compare
PP_3511 -2.3 -5.9 Branched-chain-amino-acid aminotransferase compare
PP_1778 -2.3 -5.8 Lipopolysaccharide ABC export system, permease protein compare
PP_1995 -2.3 -6.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -2.2 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -2.2 -11.2 homoserine O-acetyltransferase compare
PP_4936 -2.2 -6.5 O-antigen polymerase compare
PP_4700 -2.1 -4.6 pantothenate synthetase compare
PP_1805 -2.0 -13.9 Polysaccharide biosynthesis protein compare
PP_1231 -2.0 -6.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -2.0 -4.2 Ornithine carbamoyltransferase compare
PP_1293 -2.0 -1.6 molybdopterin synthase small subunit compare
PP_3946 -1.9 -1.9 HTH-type transcriptional repressor NicR compare
PP_2371 -1.9 -4.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0001 -1.9 -1.7 probable chromosome-partitioning protein compare
PP_2001 -1.9 -8.5 O-succinylhomoserine sulfhydrylase compare
PP_0691 -1.8 -4.4 Glutamate 5-kinase compare
PP_5028 -1.7 -3.3 proline iminopeptidase compare
PP_0787 -1.7 -3.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5014 -1.7 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1381 -1.7 -1.4 4-carboxymuconolactone decarboxylase compare
PP_0833 -1.6 -3.2 queuine tRNA-ribosyltransferase compare
PP_5095 -1.6 -2.6 pyrroline-5-carboxylate reductase compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_5085 -1.6 -7.2 malic enzyme B compare
PP_0264 -1.6 -5.2 Sensor histidine kinase compare
PP_2328 -1.6 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_2327 -1.5 -5.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0694 -1.5 -3.5 conserved protein of unknown function compare
PP_2999 -1.5 -1.4 Glyoxalase family protein compare
PP_3241 -1.5 -1.4 conserved exported protein of unknown function compare
PP_5644 -1.5 -3.1 conserved membrane protein of unknown function compare
PP_5279 -1.5 -3.0 conserved protein of unknown function compare
PP_0164 -1.5 -7.3 conserved protein of unknown function compare
PP_5604 -1.5 -1.7 putative subtilisin-like serine protease compare
PP_4004 -1.4 -1.9 DNA translocase FtsK compare
PP_3398 -1.4 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3505 -1.4 -2.2 conserved protein of unknown function compare
PP_0719 -1.4 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5322 -1.4 -5.5 putative metal ion transporter compare
PP_2504 -1.4 -2.1 putative tautomerase K2 compare
PP_0735 -1.3 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_1528 -1.3 -2.1 conserved protein of unknown function compare
PP_4782 -1.3 -2.3 Phosphomethylpyrimidine kinase compare
PP_5054 -1.3 -1.9 glutaredoxin 3 compare
PP_2322 -1.3 -6.3 Major outer membrane lipoprotein compare
PP_1233 -1.3 -2.6 sulfurtransferase compare
PP_4696 -1.3 -3.4 Nitrogen regulation protein NR(I) compare
PP_2018 -1.2 -4.5 adhesin-associated BNR repeat protein (from data) compare
PP_2370 -1.2 -3.6 conserved protein of unknown function compare
PP_3637 -1.2 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5583 -1.2 -1.2 conserved protein of unknown function compare
PP_1664 -1.2 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_0063 -1.2 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2581 -1.2 -1.6 conserved protein of unknown function compare
PP_t10 -1.2 -2.1 tRNA-Pro compare
PP_1054 -1.2 -1.2 Type II secretion pathway protein XcpZ compare
PP_1224 -1.2 -4.7 periplasmic subunit of the TolQRA transport system compare
PP_3539 -1.1 -1.9 putative Transcriptional regulator compare
PP_0914 -1.1 -6.5 GGDEF domain protein compare
PP_2633 -1.1 -1.4 conserved protein of unknown function compare
PP_1217 -1.1 -1.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0435 -1.1 -8.3 Peptidase, M23/M37 family compare
PP_5225 -1.1 -1.3 frataxin compare
PP_3460 -1.1 -2.0 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2000 -1.1 -1.0 amidophosphoribosyl transferase compare
PP_2390 -1.1 -4.7 Transcriptional regulator, LysR family compare
PP_4797 -1.1 -1.3 conserved protein of unknown function compare
PP_5104 -1.0 -4.5 thiazole synthase compare
PP_1632 -1.0 -1.2 conserved protein of unknown function compare
PP_2844 -1.0 -2.2 Urease subunit beta compare
PP_4964 -1.0 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2320 -1.0 -7.8 conserved exported protein of unknown function compare
PP_5328 -1.0 -3.2 putative phosphate transport system permease protein compare
PP_5295 -1.0 -1.1 conserved protein of unknown function compare
PP_0513 -1.0 -1.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3876 -1.0 -2.3 conserved protein of unknown function compare
PP_4939 -1.0 -3.5 conserved protein of unknown function compare
PP_2388 -0.9 -2.7 Transporter, LysE family compare
PP_4699 -0.9 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2088 -0.9 -3.4 RNA polymerase sigma factor SigX compare
PP_4917 -0.9 -2.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2323 -0.9 -5.9 conserved protein of unknown function compare
PP_1702 -0.9 -2.4 Recombination-associated protein RdgC compare
PP_3243 -0.9 -2.8 Acetyltransferase, GNAT family compare
PP_4481 -0.9 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1912 -0.9 -2.4 Phosphate acyltransferase compare
PP_4789 -0.9 -2.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0048 -0.9 -1.1 conserved protein of unknown function compare
PP_0596 -0.9 -5.1 Omega-amino acid--pyruvate aminotransferase compare
PP_0025 -0.9 -0.8 hypothetical protein compare
PP_0240 -0.9 -2.9 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4196 -0.8 -1.6 conserved exported protein of unknown function compare
PP_0927 -0.8 -6.0 aromatic amino acid transport protein compare
PP_5224 -0.8 -2.7 conserved protein of unknown function compare
PP_1493 -0.8 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4922 -0.8 -4.8 Phosphomethylpyrimidine synthase compare
PP_4941 -0.8 -4.1 conserved exported protein of unknown function compare
PP_1548 -0.8 -1.7 conserved protein of unknown function compare
PP_3048 -0.8 -1.9 conserved protein of unknown function compare
PP_4363 -0.8 -4.6 Sensor histidine kinase/response regulator compare
PP_0362 -0.8 -4.9 Biotin synthase compare
PP_4362 -0.8 -1.5 conserved protein of unknown function compare
PP_3891 -0.8 -1.4 conserved protein of unknown function compare
PP_3926 -0.8 -0.6 short-chain dehydrogenase compare
PP_2309 -0.8 -1.3 conserved protein of unknown function compare
PP_3748 -0.8 -2.3 conserved hypothetical protein compare
PP_3929 -0.8 -2.3 conserved protein of unknown function compare
PP_1216 -0.8 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4470 -0.8 -2.2 putative transcriptional regulator (Arc domain-containing) compare
PP_1110 -0.8 -2.2 serine acetyltransferase compare
PP_2324 -0.8 -4.1 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2307 -0.8 -1.0 conserved protein of unknown function compare
PP_1021 -0.8 -2.4 DNA-binding transcriptional regulator compare
PP_0766 -0.8 -5.6 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_4268 -0.8 -0.8 nucleoid-associated broad specificity regulator compare
PP_5445 -0.8 -1.6 conserved protein of unknown function compare
PP_1348 -0.8 -3.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0765 -0.7 -5.9 putative adhesin (DUF1302) (from data) compare
PP_2899 -0.7 -1.0 conserved exported protein of unknown function compare
PP_2510 -0.7 -1.5 conserved protein of unknown function compare
PP_2442 -0.7 -1.2 conserved protein of unknown function, DUF480 family compare
PP_0963 -0.7 -1.7 putative BolA family protein compare
PP_2826 -0.7 -2.3 Transcriptional regulator MexT compare
PP_1512 -0.7 -1.9 conserved protein of unknown function compare
PP_5331 -0.7 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_3244 -0.7 -2.2 Magnesium transporter, MgtC family compare
PP_3105 -0.7 -1.4 conserved membrane protein of unknown function compare
PP_0365 -0.7 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0550 -0.7 -2.9 conserved protein of unknown function compare
PP_4479 -0.7 -2.8 arginine N-succinyltransferase, subunit beta compare
PP_5654 -0.7 -0.8 putative phosphotriesterase compare
PP_2019 -0.7 -5.2 adhesin-associated MmpL efflux pump (from data) compare
PP_5350 -0.7 -1.6 Transcriptional regulator, RpiR family compare
PP_4722 -0.7 -2.4 Transcription elongation factor GreA compare
PP_4808 -0.7 -1.7 23S rRNA m3psi1915 methyltransferase compare
PP_5652 -0.7 -0.8 conserved protein of unknown function, phage origin compare
PP_4830 -0.7 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_4591 -0.7 -2.0 Ribonuclease D compare
PP_1045 -0.7 -1.2 Type II secretion pathway protein XcpP compare
PP_4560 -0.7 -1.8 putative Ribonuclease BN compare
PP_1426 -0.7 -4.8 L-aspartate oxidase compare
PP_4803 -0.7 -3.6 D-alanyl-D-alanine carboxypeptidase compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_2067 -0.7 -1.5 putative EmrB/QacA family drug resistance transporter compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Succinic Acid in Pseudomonas putida KT2440

For carbon source Succinic Acid across organisms