Experiment set29IT032 for Pseudomonas putida KT2440

Compare to:

Valerolactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_0406 -4.8 -3.3 Nucleotidyltransferase family protein compare
PP_4199 -4.3 -2.0 putative Lipoprotein compare
PP_0292 -3.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3821 -3.5 -5.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3098 -3.5 -1.6 conserved protein of unknown function compare
PP_4364 -3.4 -3.3 putative Anti-sigma F factor antagonist compare
PP_1269 -3.3 -1.5 Universal stress protein family compare
PP_2031 -3.0 -2.1 conserved protein of unknown function compare
PP_5594 -2.8 -1.8 conserved protein of unknown function compare
PP_5017 -2.8 -1.3 Sec-independent protein translocase protein TatB compare
PP_0290 -2.7 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -2.6 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_5575 -2.6 -1.5 conserved protein of unknown function compare
PP_1328 -2.4 -1.7 Protein MraZ compare
PP_0126 -2.4 -2.9 Cytochrome c4 compare
PP_1988 -2.4 -7.4 3-isopropylmalate dehydrogenase compare
PP_2306 -2.4 -2.0 conserved exported protein of unknown function compare
PP_4723 -2.4 -11.7 Carbamoyl-phosphate synthase large chain compare
PP_1778 -2.3 -1.6 Lipopolysaccharide ABC export system, permease protein compare
PP_3946 -2.3 -1.4 HTH-type transcriptional repressor NicR compare
PP_4890 -2.3 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -2.3 -7.1 Dihydroxy-acid dehydratase compare
PP_0206 -2.2 -2.6 Ferredoxin, 4Fe-4S compare
PP_4952 -2.2 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2910 -2.2 -5.9 L-2-hydroxyglutarate oxidase compare
PP_1985 -2.1 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_5155 -2.1 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1233 -2.1 -2.5 sulfurtransferase compare
PP_0967 -2.0 -6.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5495 -2.0 -2.4 protein of unknown function compare
PP_5097 -2.0 -8.0 homoserine O-acetyltransferase compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_0630 -2.0 -0.9 DNA gyrase inhibitor YacG compare
PP_3511 -2.0 -5.7 Branched-chain-amino-acid aminotransferase compare
PP_0289 -2.0 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2196 -1.9 -2.1 agmatinase compare
PP_2999 -1.9 -1.3 Glyoxalase family protein compare
PP_2511 -1.9 -2.2 conserved protein of unknown function compare
PP_0966 -1.9 -6.4 Histidinol dehydrogenase compare
PP_3637 -1.9 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0409 -1.9 -7.8 Sensory box histidine kinase compare
PP_3241 -1.9 -1.2 conserved exported protein of unknown function compare
PP_1995 -1.9 -4.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4695 -1.9 -5.7 Sensory box histidine kinase compare
PP_0422 -1.9 -3.1 Indole-3-glycerol phosphate synthase compare
PP_0421 -1.9 -5.0 Anthranilate phosphoribosyltransferase compare
PP_4909 -1.9 -4.5 phosphoserine phosphatase compare
PP_1301 -1.9 -5.9 quality control serine endoprotease DegS compare
PP_3315 -1.8 -3.5 conserved membrane protein of unknown function compare
PP_1088 -1.8 -6.9 Argininosuccinate synthase compare
PP_0653 -1.8 -1.2 conserved protein of unknown function compare
PP_5015 -1.8 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4009 -1.8 -3.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_0417 -1.8 -9.7 Anthranilate synthase component 1 compare
PP_1779 -1.8 -1.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4678 -1.7 -8.5 Ketol-acid reductoisomerase compare
PP_1317 -1.7 -4.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5185 -1.7 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5230 -1.7 -1.7 Tyrosine recombinase XerC compare
PP_2145 -1.7 -5.7 beta-N-acetylglucosaminidase compare
PP_4999 -1.7 -1.7 dihydroorotase-like protein compare
PP_4116 -1.7 -6.6 isocitrate lyase compare
PP_4680 -1.7 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -1.7 -2.3 Ornithine carbamoyltransferase compare
PP_4940 -1.7 -2.6 Putative glycosyltransferase compare
PP_3551 -1.7 -1.7 DNA-binding response regulator, LuxR family compare
PP_0547 -1.7 -2.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4143 -1.6 -2.7 conserved protein of unknown function compare
PP_2499 -1.6 -1.1 conserved protein of unknown function compare
PP_1598 -1.6 -4.3 regulatory intramembrane protein RIP zinc protease compare
PP_0125 -1.6 -1.9 putative cytochrome c-type protein compare
PP_0965 -1.6 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5708 -1.6 -3.7 protein of unknown function compare
PP_4058 -1.6 -5.9 1,4-alpha-glucan branching enzyme compare
PP_4724 -1.6 -3.9 Carbamoyl-phosphate synthase small chain compare
PP_1355 -1.6 -12.4 Muropeptide permease AmpG compare
PP_2348 -1.5 -3.2 Sensor histidine kinase compare
PP_0293 -1.5 -1.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0086 -1.5 -1.7 conserved protein of unknown function compare
PP_3312 -1.5 -0.9 putative Heat shock protein compare
PP_0435 -1.5 -9.6 Peptidase, M23/M37 family compare
PP_4700 -1.5 -2.5 pantothenate synthetase compare
PP_5652 -1.5 -1.5 conserved protein of unknown function, phage origin compare
PP_2530 -1.5 -2.1 conserved protein of unknown function compare
PP_1401 -1.5 -4.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5322 -1.5 -3.8 putative metal ion transporter compare
PP_5232 -1.5 -1.2 conserved protein of unknown function compare
PP_2740 -1.4 -1.2 Transcriptional regulator, MerR family compare
PP_0434 -1.4 -7.3 Anhydro-N-acetylmuramic acid kinase compare
PP_2462 -1.4 -2.7 conserved protein of unknown function compare
PP_1318 -1.4 -4.3 Cytochrome b compare
PP_0184 -1.4 -3.1 Argininosuccinate lyase compare
PP_4726 -1.4 -2.1 Chaperone protein DnaJ compare
PP_2356 -1.4 -5.7 putative Phytochrome family protein compare
PP_0185 -1.4 -5.4 Positive alginate biosynthesis regulatory protein compare
PP_1400 -1.3 -7.0 Alpha-ketoglutarate permease compare
PP_5505 -1.3 -1.6 conserved transmembrane protein of unknown function compare
PP_2354 -1.3 -5.0 Sensory box histidine kinase/response regulator compare
PP_2714 -1.3 -3.4 Sensor histidine kinase compare
PP_1319 -1.3 -3.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3833 -1.3 -2.9 Response regulator compare
PP_2327 -1.3 -3.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4010 -1.3 -2.8 DNA replication inhibitor compare
PP_3947 -1.3 -2.3 nicotinate dehydrogenase subunit A compare
PP_3409 -1.3 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_4696 -1.3 -1.5 Nitrogen regulation protein NR(I) compare
PP_0405 -1.3 -7.7 conserved protein of unknown function compare
PP_1025 -1.3 -5.3 2-isopropylmalate synthase compare
PP_2152 -1.3 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_0356 -1.3 -3.3 malate synthase G compare
PP_1860 -1.3 -2.8 Organic hydroperoxide resistance transcriptional regulator compare
PP_3640 -1.3 -2.2 Transcriptional regulator, AraC family compare
PP_2847 -1.3 -1.4 Urease accessory protein UreJ compare
PP_4320 -1.3 -2.8 cytochrome c-type biogenesis protein compare
PP_2256 -1.3 -1.9 Transcriptional regulator, Cro/CI family compare
PP_5278 -1.3 -2.4 4-guanidinobutyraldehyde dehydrogenase compare
PP_2899 -1.2 -1.0 conserved exported protein of unknown function compare
PP_5289 -1.2 -2.0 Acetylglutamate kinase compare
PP_5644 -1.2 -3.1 conserved membrane protein of unknown function compare
PP_2633 -1.2 -0.9 conserved protein of unknown function compare
PP_5483 -1.2 -1.0 conserved protein of unknown function compare
PP_3903 -1.2 -1.2 conserved protein of unknown function compare
PP_0691 -1.2 -2.3 Glutamate 5-kinase compare
PP_2067 -1.2 -2.0 putative EmrB/QacA family drug resistance transporter compare
PP_5561 -1.2 -1.4 conserved protein of unknown function compare
PP_5725 -1.2 -2.1 protein of unknown function compare
PP_1402 -1.2 -5.2 C4-dicarboxylate transport sensor protein compare
PP_4799 -1.2 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2345 -1.2 -1.8 conserved exported protein of unknown function compare
PP_4419 -1.2 -1.3 transposase compare
PP_1713 -1.2 -2.1 Transcriptional regulator PcaQ compare
PP_5203 -1.2 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_0878 -1.2 -3.3 dipeptide ABC transporter, binding subunit compare
PP_1427 -1.2 -4.4 RNA polymerase sigma E factor compare
PP_5604 -1.2 -0.9 putative subtilisin-like serine protease compare
PP_2868 -1.2 -3.9 Transcriptional regulator, Cro/CI family compare
PP_1074 -1.2 -2.6 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5202 -1.2 -1.7 putative cell division protein compare
PP_3471 -1.1 -2.9 conserved protein of unknown function compare
PP_5098 -1.1 -4.2 methionine biosynthesis protein MetW compare
PP_4503 -1.1 -0.9 DNA-binding response regulator compare
PP_4591 -1.1 -2.2 Ribonuclease D compare
PP_3460 -1.1 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_3643 -1.1 -2.2 putative Oxidoreductase compare
PP_0082 -1.1 -1.9 tryptophan synthase alpha chain compare
PP_1826 -1.1 -1.0 Hydrolase, isochorismatase family compare
PP_2429 -1.1 -1.3 putative Membrane protein compare
PP_0376 -1.1 -4.0 Coenzyme PQQ synthesis protein E compare
PP_4679 -1.1 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1493 -1.1 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2441 -1.1 -1.4 conserved protein of unknown function compare
PP_5423 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_5533 -1.1 -0.8 conserved protein of unknown function compare
PP_3754 -1.1 -2.7 Beta-ketothiolase BktB compare
PP_0194 -1.0 -2.4 Transcriptional regulatory protein AlgP compare
PP_4470 -1.0 -1.4 putative transcriptional regulator (Arc domain-containing) compare
PP_2756 -1.0 -2.1 conserved protein of unknown function compare
PP_2435 -1.0 -2.2 cysteine desulfurase compare
PP_0737 -1.0 -2.2 lipid A 3-O-deacylase compare
PP_3398 -1.0 -1.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5359 -1.0 -1.2 CobW/P47K family protein compare
PP_1825 -1.0 -1.9 conserved exported protein of unknown function compare
PP_4625 -1.0 -1.4 anti-holin regulator of holin CidA compare
PP_0083 -1.0 -1.7 tryptophan synthase beta chain compare
PP_1124 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_2370 -1.0 -1.3 conserved protein of unknown function compare
PP_0984 -1.0 -3.1 conserved membrane protein of unknown function compare
PP_4101 -1.0 -2.1 Acetyltransferase, GNAT family compare
PP_0951 -1.0 -3.7 Ribosome hibernation promoting factor compare
PP_0195 -1.0 -1.2 conserved protein of unknown function compare
PP_5327 -1.0 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_5085 -1.0 -3.3 malic enzyme B compare
PP_5248 -1.0 -0.6 putative hydrolase compare
PP_3770 -1.0 -1.7 conserved protein of unknown function compare
PP_0301 -1.0 -3.3 betainyl-CoA thiolase compare
PP_4754 -1.0 -3.6 Transcriptional regulator, TetR family compare
PP_2001 -1.0 -3.5 O-succinylhomoserine sulfhydrylase compare
PP_4236 -1.0 -1.6 putative Thiol:disulfide interchange protein dsbE compare
PP_3244 -1.0 -1.9 Magnesium transporter, MgtC family compare
PP_2568 -0.9 -0.9 Ring-cleaving dioxygenase compare
PP_1041 -0.9 -0.8 twin arginine protein export complex subunit compare
PP_4515 -0.9 -2.5 Transcriptional regulator, MarR family compare
PP_2029 -0.9 -1.2 von Willebrand factor type A domain protein compare
PP_0420 -0.9 -4.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5253 -0.9 -2.6 Arylesterase compare
PP_4837 -0.9 -0.9 conserved protein of unknown function compare
PP_3753 -0.9 -3.0 Transcriptional regulator, AraC family compare
PP_2192 -0.9 -2.6 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_5162 -0.9 -2.4 conserved exported protein of unknown function compare
PP_1654 -0.9 -1.1 cysteine synthase B compare
PP_1303 -0.9 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_2551 -0.9 -2.5 Transcriptional regulator, LysR family compare
PP_5428 -0.9 -2.4 conserved exported protein of unknown function compare
PP_0585 -0.9 -1.0 putative metal-sensitive transcriptional regulator, MerR family compare
PP_5477 -0.9 -2.4 conserved protein of unknown function compare
PP_4997 -0.9 -0.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0610 -0.9 -1.5 conserved exported protein of unknown function compare
PP_0056 -0.9 -5.6 choline dehydrogenase compare
PP_2187 -0.9 -2.8 Universal stress protein family compare
PP_1759 -0.9 -2.5 conserved exported protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source Valerolactone in Pseudomonas putida KT2440

For carbon source Valerolactone across organisms