Experiment set29IT031 for Pseudomonas putida KT2440

Compare to:

Valerolactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_2307 -4.0 -2.8 conserved protein of unknown function compare
PP_0293 -4.0 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4387 -3.9 -2.7 conserved exported protein of unknown function compare
PP_3637 -3.9 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0422 -3.8 -3.7 Indole-3-glycerol phosphate synthase compare
PP_1862 -3.8 -2.6 conserved membrane protein of unknown function compare
PP_0421 -3.6 -4.3 Anthranilate phosphoribosyltransferase compare
PP_4364 -3.6 -3.5 putative Anti-sigma F factor antagonist compare
PP_5289 -3.6 -2.5 Acetylglutamate kinase compare
PP_0292 -3.4 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3821 -3.4 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3052 -3.3 -1.5 conserved protein of unknown function compare
PP_3447 -3.3 -1.4 conserved membrane protein of unknown function compare
PP_0025 -3.2 -1.4 hypothetical protein compare
PP_0406 -3.2 -4.4 Nucleotidyltransferase family protein compare
PP_3880 -3.2 -1.4 conserved exported protein of unknown function compare
PP_1568 -3.1 -1.3 conserved protein of unknown function compare
PP_0984 -3.0 -5.3 conserved membrane protein of unknown function compare
PP_4999 -2.9 -2.0 dihydroorotase-like protein compare
PP_1096 -2.9 -2.0 putative electron transport complex protein compare
PP_3891 -2.9 -2.8 conserved protein of unknown function compare
PP_5185 -2.8 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4961 -2.8 -1.7 putative Lipoprotein compare
PP_1995 -2.8 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1328 -2.8 -1.9 Protein MraZ compare
PP_0417 -2.7 -10.9 Anthranilate synthase component 1 compare
PP_3511 -2.7 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_3971 -2.7 -1.7 conserved protein of unknown function compare
PP_2137 -2.6 -3.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_1716 -2.6 -2.0 Transcriptional regulator, Cro/CI family compare
PP_4058 -2.6 -6.3 1,4-alpha-glucan branching enzyme compare
PP_0319 -2.6 -1.6 conserved protein of unknown function compare
PP_0834 -2.5 -1.7 Sec translocation complex subunit YajC compare
PP_1237 -2.5 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4143 -2.5 -2.8 conserved protein of unknown function compare
PP_0289 -2.5 -4.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4700 -2.5 -2.9 pantothenate synthetase compare
PP_1988 -2.5 -6.7 3-isopropylmalate dehydrogenase compare
PP_2152 -2.4 -2.2 glycerophosphoryl diester phosphodiesterase compare
PP_1318 -2.4 -5.2 Cytochrome b compare
PP_4679 -2.4 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3245 -2.4 -1.5 conserved protein of unknown function compare
PP_4678 -2.4 -9.2 Ketol-acid reductoisomerase compare
PP_4581 -2.4 -2.2 putative amidotransferase compare
PP_0966 -2.4 -6.6 Histidinol dehydrogenase compare
PP_5748 -2.4 -1.2 cytochrome c heme lyase subunit compare
PP_1142 -2.3 -1.0 conserved protein of unknown function compare
PP_4296 -2.3 -1.4 conserved exported protein of unknown function compare
PP_1778 -2.3 -2.8 Lipopolysaccharide ABC export system, permease protein compare
PP_0184 -2.3 -3.9 Argininosuccinate lyase compare
PP_4952 -2.3 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4723 -2.2 -10.0 Carbamoyl-phosphate synthase large chain compare
PP_2044 -2.2 -1.3 conserved inner membrane protein of unknown function compare
PP_2910 -2.2 -6.1 L-2-hydroxyglutarate oxidase compare
PP_1301 -2.2 -4.5 quality control serine endoprotease DegS compare
PP_1401 -2.2 -5.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5322 -2.1 -4.5 putative metal ion transporter compare
PP_t10 -2.1 -1.5 tRNA-Pro compare
PP_4837 -2.1 -2.0 conserved protein of unknown function compare
PP_4680 -2.1 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -2.1 -6.2 Dihydroxy-acid dehydratase compare
PP_4695 -2.1 -6.2 Sensory box histidine kinase compare
PP_1317 -2.0 -4.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5098 -2.0 -5.6 methionine biosynthesis protein MetW compare
PP_3726 -2.0 -1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_0083 -2.0 -2.7 tryptophan synthase beta chain compare
PP_4328 -1.9 -2.2 conserved protein of unknown function compare
PP_4940 -1.9 -2.2 Putative glycosyltransferase compare
PP_2370 -1.9 -2.9 conserved protein of unknown function compare
PP_2327 -1.8 -5.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0409 -1.8 -6.1 Sensory box histidine kinase compare
PP_1985 -1.8 -3.7 3-isopropylmalate dehydratase large subunit compare
PP_1598 -1.8 -3.7 regulatory intramembrane protein RIP zinc protease compare
PP_2665 -1.8 -2.5 Glycerol metabolism activator compare
PP_1779 -1.8 -2.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3505 -1.8 -2.0 conserved protein of unknown function compare
PP_0126 -1.8 -3.0 Cytochrome c4 compare
PP_4724 -1.8 -4.9 Carbamoyl-phosphate synthase small chain compare
PP_0547 -1.8 -2.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3754 -1.8 -4.1 Beta-ketothiolase BktB compare
PP_2356 -1.8 -6.8 putative Phytochrome family protein compare
PP_1400 -1.8 -7.5 Alpha-ketoglutarate permease compare
PP_2759 -1.8 -2.2 ribose ABC transporter - ATP-binding subunit compare
PP_1088 -1.8 -7.1 Argininosuccinate synthase compare
PP_1654 -1.8 -1.7 cysteine synthase B compare
PP_0434 -1.7 -6.9 Anhydro-N-acetylmuramic acid kinase compare
PP_4320 -1.7 -3.7 cytochrome c-type biogenesis protein compare
PP_4799 -1.7 -1.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2999 -1.7 -1.1 Glyoxalase family protein compare
PP_4529 -1.7 -3.3 conserved protein of unknown function compare
PP_4480 -1.7 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_3192 -1.7 -1.9 conserved protein of unknown function compare
PP_5097 -1.7 -6.8 homoserine O-acetyltransferase compare
PP_0435 -1.7 -10.2 Peptidase, M23/M37 family compare
PP_1402 -1.7 -5.6 C4-dicarboxylate transport sensor protein compare
PP_0967 -1.6 -5.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0405 -1.6 -9.5 conserved protein of unknown function compare
PP_1319 -1.6 -3.5 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4116 -1.6 -5.7 isocitrate lyase compare
PP_0691 -1.6 -3.1 Glutamate 5-kinase compare
PP_5706 -1.6 -2.1 Sec translocation complex - SecG subunit compare
PP_0379 -1.5 -3.5 Coenzyme PQQ synthesis protein B compare
PP_2675 -1.5 -2.3 Cytochrome c-type protein compare
PP_0303 -1.5 -2.1 dehydrocarnitine cleavage enzyme compare
PP_3938 -1.5 -1.3 conserved protein of unknown function compare
PP_3247 -1.5 -2.0 Transporter, bile acid/Na+ symporter family compare
PP_5644 -1.5 -2.3 conserved membrane protein of unknown function compare
PP_3239 -1.5 -1.2 putative cointegrate resolution protein T Tn4652 compare
PP_4696 -1.5 -2.2 Nitrogen regulation protein NR(I) compare
PP_0965 -1.5 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0082 -1.5 -2.4 tryptophan synthase alpha chain compare
PP_1683 -1.5 -1.8 Transcriptional regulator, MarR family compare
PP_0824 -1.5 -3.1 phosphonate transport system-binding protein compare
PP_1122 -1.5 -2.0 OmpA family protein compare
PP_0274 -1.5 -0.9 putative transcriptional regulator containing HTH domain compare
PP_5099 -1.5 -2.6 conserved protein of unknown function compare
PP_0963 -1.4 -1.7 putative BolA family protein compare
PP_0833 -1.4 -1.7 queuine tRNA-ribosyltransferase compare
PP_5495 -1.4 -1.4 protein of unknown function compare
PP_3434 -1.4 -1.3 conserved protein of unknown function compare
PP_5279 -1.4 -1.7 conserved protein of unknown function compare
PP_3098 -1.4 -0.9 conserved protein of unknown function compare
PP_1355 -1.4 -9.9 Muropeptide permease AmpG compare
PP_2378 -1.4 -1.0 Fe/S biogenesis protein NfuA compare
PP_0345 -1.4 -2.3 putative Heptose kinase WapP compare
PP_3265 -1.4 -2.1 putative phosphohydrolase of unknown function compare
PP_2633 -1.4 -1.1 conserved protein of unknown function compare
PP_2031 -1.4 -1.3 conserved protein of unknown function compare
PP_5232 -1.4 -1.1 conserved protein of unknown function compare
PP_0801 -1.4 -0.8 conserved exported protein of unknown function compare
PP_2724 -1.3 -3.7 conserved protein of unknown function compare
PP_4828 -1.3 -0.8 Precorrin-8X methylmutase compare
PP_0424 -1.3 -2.8 DNA-binding transcriptional dual regulator compare
PP_2348 -1.3 -2.8 Sensor histidine kinase compare
PP_0356 -1.3 -3.5 malate synthase G compare
PP_5659 -1.3 -2.2 protein of unknown function compare
PP_5399 -1.3 -4.4 conserved protein of unknown function compare
PP_0556 -1.3 -1.4 Acetoin catabolism protein compare
PP_2256 -1.3 -1.4 Transcriptional regulator, Cro/CI family compare
PP_4236 -1.3 -2.0 putative Thiol:disulfide interchange protein dsbE compare
PP_2575 -1.3 -0.8 conserved exported protein of unknown function compare
PP_1860 -1.3 -2.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_1468 -1.3 -0.9 Tyrosine recombinase XerD compare
PP_1079 -1.3 -2.3 Ornithine carbamoyltransferase compare
PP_4505 -1.3 -3.4 Sensor histidine kinase compare
PP_1491 -1.3 -2.7 CheW domain protein compare
PP_2373 -1.3 -1.1 conserved protein of unknown function compare
PP_1986 -1.3 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_4997 -1.3 -0.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0549 -1.3 -2.3 putative Lipoprotein compare
PP_3999 -1.3 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5014 -1.3 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_5168 -1.3 -2.8 sulfate/thiosulfate import ATP-binding protein compare
PP_0502 -1.2 -2.2 conserved protein of unknown function compare
PP_2354 -1.2 -4.9 Sensory box histidine kinase/response regulator compare
PP_2504 -1.2 -1.7 putative tautomerase K2 compare
PP_2342 -1.2 -2.1 conserved protein of unknown function compare
PP_4793 -1.2 -1.5 conserved protein of unknown function compare
PP_3672 -1.2 -1.2 conserved protein of unknown function compare
PP_1269 -1.2 -0.8 Universal stress protein family compare
PP_1025 -1.2 -4.7 2-isopropylmalate synthase compare
PP_1224 -1.2 -2.5 periplasmic subunit of the TolQRA transport system compare
PP_2027 -1.2 -2.5 conserved exported protein of unknown function compare
PP_5203 -1.2 -3.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_0378 -1.2 -3.2 Pyrroloquinoline-quinone synthase compare
PP_0643 -1.2 -0.9 protein of unknown function compare
PP_1454 -1.2 -1.6 conserved protein of unknown function compare
PP_0694 -1.2 -2.3 conserved protein of unknown function compare
PP_5230 -1.2 -1.8 Tyrosine recombinase XerC compare
PP_0001 -1.2 -0.8 probable chromosome-partitioning protein compare
PP_2419 -1.2 -3.7 conserved membrane protein of unknown function DUF1624 family compare
PP_0566 -1.2 -0.7 translation-related factor compare
PP_1427 -1.2 -4.4 RNA polymerase sigma E factor compare
PP_5701 -1.2 -0.9 conserved protein of unknown function compare
PP_2127 -1.2 -2.0 Sensor histidine kinase compare
PP_4481 -1.2 -3.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2001 -1.2 -5.3 O-succinylhomoserine sulfhydrylase compare
PP_1303 -1.2 -4.2 Sulfate adenylyltransferase subunit 2 compare
PP_0420 -1.2 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3715 -1.2 -2.1 Muconate cycloisomerase 1 compare
PP_5661 -1.2 -1.4 putative lipoprotein compare
PP_4362 -1.2 -1.6 conserved protein of unknown function compare
PP_5658 -1.2 -2.1 protein of unknown function compare
PP_0141 -1.2 -2.1 putative ABC transporter, ATP-binding protein compare
PP_0150 -1.2 -1.3 conserved exported protein of unknown function compare
PP_5504 -1.2 -2.4 conserved protein of unknown function compare
PP_4509 -1.2 -3.5 conserved protein of unknown function compare
PP_3833 -1.2 -2.6 Response regulator compare
PP_4930 -1.1 -1.7 putative small multidrug resistance protein compare
PP_0164 -1.1 -3.7 conserved protein of unknown function compare
PP_0413 -1.1 -5.2 Polyamine ABC transporter, permease protein compare
PP_3318 -1.1 -0.8 conserved protein of unknown function compare
PP_5225 -1.1 -0.9 frataxin compare
PP_4771 -1.1 -3.1 conserved membrane protein of unknown function compare
PP_0505 -1.1 -2.4 conserved protein of unknown function compare
PP_3002 -1.1 -1.8 shikimate dehydrogenase-related enzyme compare
PP_5085 -1.1 -3.7 malic enzyme B compare
PP_5155 -1.1 -1.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source Valerolactone in Pseudomonas putida KT2440

For carbon source Valerolactone across organisms