Experiment set29IT017 for Pseudomonas putida KT2440

Compare to:

2,6-diaminopimelic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4362 -4.6 -3.2 conserved protein of unknown function compare
PP_1048 -4.1 -2.1 putative protein secretion protein for export compare
PP_2441 -4.1 -2.1 conserved protein of unknown function compare
PP_3532 -4.1 -1.2 Transcriptional regulator, AsnC family compare
PP_0191 -4.0 -2.4 Transcriptional regulatory protein AlgQ compare
PP_3637 -4.0 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3241 -3.9 -1.2 conserved exported protein of unknown function compare
PP_0292 -3.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3105 -3.7 -1.9 conserved membrane protein of unknown function compare
PP_0293 -3.7 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3098 -3.7 -1.1 conserved protein of unknown function compare
PP_0801 -3.6 -1.1 conserved exported protein of unknown function compare
PP_1269 -3.5 -1.0 Universal stress protein family compare
PP_1988 -3.5 -6.7 3-isopropylmalate dehydrogenase compare
PP_0007 -3.5 -2.1 conserved hypothetical protein compare
PP_2857 -3.5 -1.4 conserved exported protein of unknown function compare
PP_2168 -3.4 -4.1 Transaldolase compare
PP_0893 -3.3 -2.1 ThiJ/PfpI family protein compare
PP_1410 -3.3 -1.0 conserved protein of unknown function compare
PP_5557 -3.3 -1.4 protein of unknown function compare
PP_2883 -3.3 -1.4 conserved protein of unknown function compare
PP_5048 -3.3 -4.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0090 -3.2 -3.8 conserved exported protein of unknown function compare
PP_5095 -3.2 -1.7 pyrroline-5-carboxylate reductase compare
PP_3555 -3.1 -4.8 putative Transmembrane sensor compare
PP_0673 -3.1 -1.6 conserved protein of unknown function compare
PP_0967 -3.1 -7.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3449 -3.1 -1.5 conserved exported protein of unknown function compare
PP_5047 -3.1 -5.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0290 -3.0 -4.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1493 -2.9 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5267 -2.9 -1.6 putative cytochrome c5 compare
PP_2575 -2.8 -1.2 conserved exported protein of unknown function compare
PP_t64 -2.8 -3.0 tRNA-Gly compare
PP_3244 -2.8 -3.0 Magnesium transporter, MgtC family compare
PP_1233 -2.8 -1.9 sulfurtransferase compare
PP_4060 -2.8 -12.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5232 -2.8 -1.1 conserved protein of unknown function compare
PP_5652 -2.8 -1.9 conserved protein of unknown function, phage origin compare
PP_1088 -2.7 -8.3 Argininosuccinate synthase compare
PP_5027 -2.7 -1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5528 -2.6 -1.1 conserved protein of unknown function compare
PP_4999 -2.6 -1.7 dihydroorotase-like protein compare
PP_1570 -2.6 -3.7 Head-tail adaptor compare
PP_0420 -2.6 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2416 -2.6 -2.5 putative Iron ABC transporter, ATP-binding protein compare
PP_1328 -2.5 -1.2 Protein MraZ compare
PP_0905 -2.5 -1.0 conserved exported protein of unknown function compare
PP_5328 -2.5 -3.4 putative phosphate transport system permease protein compare
PP_4925 -2.5 -1.7 conserved protein of unknown function compare
PP_4505 -2.5 -4.6 Sensor histidine kinase compare
PP_2129 -2.5 -2.8 conserved protein of unknown function compare
PP_4797 -2.4 -0.9 conserved protein of unknown function compare
PP_0289 -2.4 -5.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0966 -2.4 -6.0 Histidinol dehydrogenase compare
PP_5598 -2.4 -2.8 conserved protein of unknown function compare
PP_4952 -2.3 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_2347 -2.3 -3.7 DNA-binding response regulator compare
PP_4679 -2.3 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2999 -2.3 -0.9 Glyoxalase family protein compare
PP_1995 -2.2 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2681 -2.2 -1.6 coenzyme PQQ synthesis protein D compare
PP_1186 -2.2 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_3511 -2.2 -5.0 Branched-chain-amino-acid aminotransferase compare
PP_0232 -2.2 -1.1 ATP-binding taurine transporter subunit compare
PP_0512 -2.2 -1.9 hypothetical protein compare
PP_5701 -2.2 -1.1 conserved protein of unknown function compare
PP_0630 -2.2 -0.6 DNA gyrase inhibitor YacG compare
PP_4058 -2.2 -6.6 1,4-alpha-glucan branching enzyme compare
PP_4109 -2.2 -2.1 conserved protein of unknown function compare
PP_4504 -2.1 -0.8 conserved exported protein of unknown function compare
PP_0735 -2.1 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_5295 -2.1 -0.9 conserved protein of unknown function compare
PP_1439 -2.1 -0.9 conserved exported protein of unknown function compare
PP_0220 -2.1 -2.6 methionine import ATP-binding protein metN2 compare
PP_5076 -2.1 -10.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_3726 -2.1 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_4678 -2.1 -8.3 Ketol-acid reductoisomerase compare
PP_0185 -2.1 -6.8 Positive alginate biosynthesis regulatory protein compare
PP_1633 -2.1 -2.5 conserved exported protein of unknown function compare
PP_0417 -2.1 -9.5 Anthranilate synthase component 1 compare
PP_5000 -2.1 -0.8 peptidase component of the ATP-dependent HslVU protease compare
PP_3808 -2.0 -1.9 Antibiotic synthesis protein MbtH compare
PP_0653 -2.0 -0.8 conserved protein of unknown function compare
PP_1986 -2.0 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_5185 -2.0 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1293 -2.0 -0.8 molybdopterin synthase small subunit compare
PP_5475 -2.0 -0.8 conserved protein of unknown function compare
PP_2759 -2.0 -1.8 ribose ABC transporter - ATP-binding subunit compare
PP_0082 -2.0 -1.9 tryptophan synthase alpha chain compare
PP_2714 -2.0 -3.7 Sensor histidine kinase compare
PP_0184 -2.0 -3.5 Argininosuccinate lyase compare
PP_4909 -2.0 -4.5 phosphoserine phosphatase compare
PP_2903 -1.9 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5583 -1.9 -0.8 conserved protein of unknown function compare
PP_1826 -1.9 -1.2 Hydrolase, isochorismatase family compare
PP_5233 -1.9 -5.0 ammonium transporter AmtB compare
PP_2348 -1.9 -4.0 Sensor histidine kinase compare
PP_5644 -1.9 -2.2 conserved membrane protein of unknown function compare
PP_4723 -1.9 -7.7 Carbamoyl-phosphate synthase large chain compare
PP_1864 -1.9 -1.4 conserved protein of unknown function compare
PP_4271 -1.9 -0.5 conserved protein of unknown function compare
PP_4707 -1.9 -1.4 OsmY-related protein compare
PP_1979 -1.9 -1.8 putative Hydrolase compare
PP_0083 -1.9 -1.3 tryptophan synthase beta chain compare
PP_3825 -1.9 -3.5 conserved protein of unknown function compare
PP_0227 -1.9 -6.9 periplasmic cystine-binding protein compare
PP_4680 -1.8 -7.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2203 -1.8 -1.6 conserved protein of unknown function compare
PP_5471 -1.8 -0.7 putative response regulator receiver protein compare
PP_5705 -1.8 -0.9 protein of unknown function compare
PP_1729 -1.8 -0.7 conserved protein of unknown function compare
PP_2631 -1.8 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2118 -1.8 -2.3 conserved protein of unknown function compare
PP_0226 -1.8 -5.5 sulfur compound ABC transporter - permease subunit compare
PP_0250 -1.8 -2.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4593 -1.8 -1.0 conserved protein of unknown function compare
PP_5128 -1.8 -4.0 Dihydroxy-acid dehydratase compare
PP_0691 -1.8 -2.7 Glutamate 5-kinase compare
PP_0874 -1.8 -1.4 conserved protein of unknown function compare
PP_5393 -1.7 -0.7 putative metal-binding chaperone compare
PP_5289 -1.7 -2.4 Acetylglutamate kinase compare
PP_4010 -1.7 -2.7 DNA replication inhibitor compare
PP_5558 -1.7 -2.9 putative transcriptional xre family of phage origin compare
PP_3891 -1.7 -1.5 conserved protein of unknown function compare
PP_2365 -1.7 -3.0 Transcriptional regulator, AraC family compare
PP_3481 -1.7 -1.2 conserved exported protein of unknown function compare
PP_2103 -1.7 -1.8 conserved protein of unknown function compare
PP_5075 -1.7 -6.7 glutamate synthase (NADPH) beta subunit compare
PP_3947 -1.7 -2.0 nicotinate dehydrogenase subunit A compare
PP_2088 -1.7 -1.9 RNA polymerase sigma factor SigX compare
PP_3314 -1.7 -1.9 Heat shock protein, HSP20 family compare
PP_5695 -1.7 -2.2 conserved protein of unknown function compare
PP_0566 -1.7 -0.7 translation-related factor compare
PP_0421 -1.6 -4.8 Anthranilate phosphoribosyltransferase compare
PP_3292 -1.6 -2.4 conserved membrane protein of unknown function compare
PP_5229 -1.6 -3.6 conserved protein of unknown function compare
PP_1862 -1.6 -1.7 conserved membrane protein of unknown function compare
PP_4787 -1.6 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0383 -1.6 -5.1 Lysine 2-monooxygenase compare
PP_5191 -1.6 -1.9 conserved exported protein of unknown function compare
PP_1122 -1.6 -1.8 OmpA family protein compare
PP_2840 -1.6 -2.8 putative Membrane protein compare
PP_3211 -1.6 -1.8 ABC transporter, ATP-binding protein compare
PP_1829 -1.6 -1.2 Hydrolase, alpha/beta fold family compare
PP_2196 -1.6 -1.2 agmatinase compare
PP_0025 -1.6 -0.6 hypothetical protein compare
PP_2025 -1.5 -2.5 Exonuclease SbcD compare
PP_3506 -1.5 -1.8 Magnesium chelatase, subunit ChII compare
PP_1654 -1.5 -1.0 cysteine synthase B compare
PP_3821 -1.5 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1779 -1.5 -2.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3243 -1.5 -1.9 Acetyltransferase, GNAT family compare
PP_0995 -1.5 -4.2 conserved membrane protein of unknown function compare
PP_5561 -1.5 -1.9 conserved protein of unknown function compare
PP_2375 -1.5 -6.6 cobalamin-dependent methionine synthase compare
PP_0550 -1.5 -1.6 conserved protein of unknown function compare
PP_2409 -1.5 -1.6 cobalt-zinc-cadmium resistance protein compare
PP_5594 -1.5 -1.0 conserved protein of unknown function compare
PP_0274 -1.5 -0.6 putative transcriptional regulator containing HTH domain compare
PP_2370 -1.4 -2.3 conserved protein of unknown function compare
PP_0965 -1.4 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1114 -1.4 -1.9 SEC-C domain protein compare
PP_1047 -1.4 -3.1 putative protein secretion protein for export compare
PP_5500 -1.4 -2.2 protein of unknown function compare
PP_3000 -1.4 -2.6 MaoC domain protein compare
PP_3063 -1.4 -3.1 Pyocin R2_PP, tail formation protein compare
PP_5625 -1.4 -1.9 conserved protein of unknown function compare
PP_2514 -1.4 -3.7 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_2306 -1.4 -1.0 conserved exported protein of unknown function compare
PP_0957 -1.4 -0.7 D-arabinose 5-phosphate isomerase compare
PP_2503 -1.4 -1.4 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1778 -1.4 -2.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4385 -1.4 -2.1 flagellar basal-body rod protein FlgG compare
PP_1824 -1.4 -0.8 Smr domain protein compare
PP_3179 -1.4 -2.4 Transcriptional regulator, LysR family compare
PP_1261 -1.4 -1.3 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_5007 -1.3 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2070 -1.3 -1.6 Transcriptional regulator, AraC family compare
PP_0240 -1.3 -2.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2726 -1.3 -1.6 conserved membrane protein of unknown function compare
PP_0972 -1.3 -1.6 UPF0213 protein PP_0972 compare
PP_5533 -1.3 -0.7 conserved protein of unknown function compare
PP_4792 -1.3 -1.5 conserved exported protein of unknown function compare
PP_5582 -1.3 -0.5 conserved protein of unknown function compare
PP_0225 -1.3 -2.7 sulfur compound ABC transporter - ATP-binding subunit compare
PP_3423 -1.3 -3.3 Type II secretion pathway protein XcpT compare
PP_1079 -1.3 -2.1 Ornithine carbamoyltransferase compare
PP_5279 -1.3 -1.6 conserved protein of unknown function compare
PP_2345 -1.3 -1.5 conserved exported protein of unknown function compare
PP_3005 -1.3 -2.3 conserved protein of unknown function compare
PP_4136 -1.3 -0.5 Transcriptional regulator, LuxR family compare
PP_4799 -1.3 -0.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3473 -1.3 -2.0 curli secretion and assembly outer membrane associated component compare
PP_4045 -1.3 -2.1 conserved protein of unknown function compare
PP_5547 -1.3 -1.8 protein of unknown function compare
PP_2695 -1.3 -1.6 Transcriptional regulator, LysR family compare
PP_2383 -1.3 -2.4 Transcriptional regulator, AraC family compare
PP_0834 -1.3 -0.8 Sec translocation complex subunit YajC compare
PP_3531 -1.3 -1.5 conserved exported protein of unknown function compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source 2,6-diaminopimelic acid in Pseudomonas putida KT2440

For nitrogen source 2,6-diaminopimelic acid across organisms