Experiment set29IT016 for Pseudomonas putida KT2440

Compare to:

2,6-diaminopimelic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_5048 -4.3 -4.2 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1985 -3.7 -2.5 3-isopropylmalate dehydratase large subunit compare
PP_0293 -3.5 -2.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3522 -3.4 -2.3 conserved protein of unknown function compare
PP_0967 -3.1 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2504 -3.1 -2.3 putative tautomerase K2 compare
PP_1988 -3.0 -6.4 3-isopropylmalate dehydrogenase compare
PP_0673 -2.9 -2.0 conserved protein of unknown function compare
PP_0292 -2.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1045 -2.8 -1.7 Type II secretion pathway protein XcpP compare
PP_0290 -2.8 -4.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -2.6 -2.5 Acetylglutamate kinase compare
PP_2740 -2.5 -1.5 Transcriptional regulator, MerR family compare
PP_5047 -2.5 -4.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2088 -2.5 -3.4 RNA polymerase sigma factor SigX compare
PP_5571 -2.5 -1.4 conserved protein of unknown function compare
PP_4060 -2.5 -10.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3505 -2.4 -2.4 conserved protein of unknown function compare
PP_1995 -2.4 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -2.4 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_5528 -2.3 -1.3 conserved protein of unknown function compare
PP_4726 -2.3 -2.2 Chaperone protein DnaJ compare
PP_1408 -2.2 -5.8 (R)-3-hydroxydecanoyl-ACP:CoA transacylase compare
PP_5313 -2.2 -1.5 DNA-binding protein HU-alpha compare
PP_4679 -2.2 -4.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -2.2 -6.6 Histidinol dehydrogenase compare
PP_4909 -2.2 -4.8 phosphoserine phosphatase compare
PP_5076 -2.1 -10.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1987 -2.1 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_4296 -2.1 -1.2 conserved exported protein of unknown function compare
PP_1548 -2.1 -1.9 conserved protein of unknown function compare
PP_1632 -2.0 -1.2 conserved protein of unknown function compare
PP_1088 -2.0 -7.5 Argininosuccinate synthase compare
PP_0289 -2.0 -4.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -2.0 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5701 -1.9 -1.3 conserved protein of unknown function compare
PP_2848 -1.9 -3.0 urease accessory protein compare
PP_0630 -1.9 -0.8 DNA gyrase inhibitor YacG compare
PP_0417 -1.9 -10.2 Anthranilate synthase component 1 compare
PP_2087 -1.9 -2.6 CmpX protein compare
PP_0735 -1.9 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_2999 -1.9 -1.1 Glyoxalase family protein compare
PP_4680 -1.9 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -1.9 -2.2 Ornithine carbamoyltransferase compare
PP_1198 -1.8 -1.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0422 -1.8 -3.0 Indole-3-glycerol phosphate synthase compare
PP_3192 -1.7 -2.8 conserved protein of unknown function compare
PP_1635 -1.7 -1.2 DNA-binding response regulator compare
PP_2168 -1.7 -5.0 Transaldolase compare
PP_5075 -1.6 -6.4 glutamate synthase (NADPH) beta subunit compare
PP_1826 -1.6 -1.1 Hydrolase, isochorismatase family compare
PP_4133 -1.6 -2.1 Transcriptional regulator-related protein compare
PP_0420 -1.6 -5.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1589 -1.6 -3.8 uridylyltransferase compare
PP_0593 -1.6 -0.9 putative ribosome-binding factor compare
PP_4271 -1.6 -0.6 conserved protein of unknown function compare
PP_3748 -1.6 -1.8 conserved hypothetical protein compare
PP_4058 -1.6 -5.9 1,4-alpha-glucan branching enzyme compare
PP_3762 -1.6 -2.6 Response regulator compare
PP_5575 -1.5 -1.3 conserved protein of unknown function compare
PP_0821 -1.5 -2.4 conserved exported protein of unknown function compare
PP_2442 -1.5 -1.0 conserved protein of unknown function, DUF480 family compare
PP_5167 -1.5 -1.7 conserved hypothetical protein compare
PP_5090 -1.5 -1.9 putative cell division protein compare
PP_4561 -1.5 -0.9 stress response protein compare
PP_0995 -1.5 -4.6 conserved membrane protein of unknown function compare
PP_0083 -1.5 -2.0 tryptophan synthase beta chain compare
PP_2499 -1.5 -0.9 conserved protein of unknown function compare
PP_4569 -1.5 -1.5 conserved protein of unknown function compare
PP_3392 -1.5 -1.2 conserved protein of unknown function compare
PP_0406 -1.4 -3.9 Nucleotidyltransferase family protein compare
PP_0082 -1.4 -1.7 tryptophan synthase alpha chain compare
PP_5652 -1.4 -1.4 conserved protein of unknown function, phage origin compare
PP_1096 -1.4 -1.4 putative electron transport complex protein compare
PP_1778 -1.4 -2.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4632 -1.4 -3.8 dihydrofolate reductase / dihydromonapterin reductase compare
PP_5648 -1.4 -2.7 conserved exported protein of unknown function compare
PP_4678 -1.4 -6.3 Ketol-acid reductoisomerase compare
PP_3824 -1.4 -1.6 conserved exported protein of unknown function compare
PP_3511 -1.4 -3.6 Branched-chain-amino-acid aminotransferase compare
PP_0509 -1.4 -2.3 conserved protein of unknown function compare
PP_2633 -1.4 -1.1 conserved protein of unknown function compare
PP_3244 -1.3 -2.4 Magnesium transporter, MgtC family compare
PP_3840 -1.3 -0.8 conserved protein of unknown function compare
PP_5508 -1.3 -0.8 conserved protein of unknown function compare
PP_1454 -1.3 -1.8 conserved protein of unknown function compare
PP_0775 -1.3 -1.3 conserved protein of unknown function compare
PP_1779 -1.3 -2.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5748 -1.3 -1.0 cytochrome c heme lyase subunit compare
PP_3411 -1.3 -1.0 conserved protein of unknown function compare
PP_3043 -1.3 -1.1 conserved protein of unknown function compare
PP_1672 -1.3 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3434 -1.3 -1.3 conserved protein of unknown function compare
PP_4362 -1.3 -2.2 conserved protein of unknown function compare
PP_2319 -1.3 -3.2 conserved protein of unknown function compare
PP_0185 -1.2 -3.8 Positive alginate biosynthesis regulatory protein compare
PP_4316 -1.2 -2.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2950 -1.2 -1.8 conserved protein of unknown function compare
PP_1644 -1.2 -2.5 NAD(P)H dehydrogenase (quinone) compare
PP_2328 -1.2 -1.4 Phosphoadenosine phosphosulfate reductase compare
PP_4253 -1.2 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4150 -1.2 -3.7 microcin C transporter - ATP binding subunit compare
PP_0246 -1.2 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_0025 -1.2 -0.7 hypothetical protein compare
PP_2090 -1.2 -1.6 Uroporphyrinogen-III C-methyltransferase compare
PP_5483 -1.2 -0.8 conserved protein of unknown function compare
PP_3398 -1.2 -0.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4262 -1.2 -1.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1633 -1.2 -1.7 conserved exported protein of unknown function compare
PP_4249 -1.2 -2.9 conserved protein of unknown function compare
PP_3934 -1.1 -3.5 Transcriptional regulator, LysR family compare
PP_3315 -1.1 -2.5 conserved membrane protein of unknown function compare
PP_5003 -1.1 -4.6 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0852 -1.1 -1.1 Transcriptional regulator, Cro/CI family compare
PP_4845 -1.1 -2.5 putative Urea ABC transporter, ATP-binding protein compare
PP_0225 -1.1 -2.7 sulfur compound ABC transporter - ATP-binding subunit compare
PP_5350 -1.1 -2.0 Transcriptional regulator, RpiR family compare
PP_2373 -1.1 -0.9 conserved protein of unknown function compare
PP_1493 -1.1 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3318 -1.1 -0.8 conserved protein of unknown function compare
PP_3048 -1.1 -1.5 conserved protein of unknown function compare
PP_0226 -1.1 -3.6 sulfur compound ABC transporter - permease subunit compare
PP_2291 -1.1 -1.5 conserved protein of unknown function compare
PP_4477 -1.1 -3.6 N-succinylarginine dihydrolase compare
PP_5640 -1.1 -1.9 conserved protein of unknown function compare
PP_2172 -1.1 -1.7 conserved exported protein of unknown function compare
PP_1679 -1.1 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5128 -1.1 -3.9 Dihydroxy-acid dehydratase compare
PP_1000 -1.1 -3.6 ornithine carbamoyltransferase, catabolic compare
PP_0184 -1.1 -2.8 Argininosuccinate lyase compare
PP_3914 -1.1 -3.2 conserved protein of unknown function compare
PP_5507 -1.1 -2.1 protein of unknown function compare
PP_1959 -1.1 -2.4 conserved protein of unknown function compare
PP_4799 -1.1 -1.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3938 -1.1 -1.0 conserved protein of unknown function compare
PP_3328 -1.1 -1.1 putative Ring-cleaving dioxygenase compare
PP_5659 -1.1 -2.1 protein of unknown function compare
PP_2187 -1.1 -2.4 Universal stress protein family compare
PP_4966 -1.0 -1.2 transcriptional regulator of methionine metabolism compare
PP_2931 -1.0 -2.1 conserved protein of unknown function compare
PP_4723 -1.0 -6.6 Carbamoyl-phosphate synthase large chain compare
PP_4377 -1.0 -2.5 putative Flagellin FlaG compare
PP_4423 -1.0 -3.2 conserved protein of unknown function compare
PP_2619 -1.0 -1.7 FHA domain protein compare
PP_4136 -1.0 -0.5 Transcriptional regulator, LuxR family compare
PP_3531 -1.0 -2.0 conserved exported protein of unknown function compare
PP_0305 -1.0 -1.9 HTH-type transcriptional regulator CdhR compare
PP_4073 -1.0 -1.5 conserved exported protein of unknown function compare
PP_5217 -1.0 -6.7 Polyphosphate kinase compare
PP_4724 -1.0 -3.2 Carbamoyl-phosphate synthase small chain compare
PP_2214 -1.0 -1.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3205 -1.0 -1.4 Fumarylacetoacetate hydrolase family protein compare
PP_5256 -1.0 -2.1 Cyclic nucleotide-binding protein compare
PP_2118 -1.0 -1.9 conserved protein of unknown function compare
PP_5170 -1.0 -1.9 sulfate ABC transporter, inner membrane subunit CysT compare
PP_0383 -1.0 -4.8 Lysine 2-monooxygenase compare
PP_3660 -1.0 -1.9 Transcriptional regulator, LysR family compare
PP_4196 -1.0 -1.1 conserved exported protein of unknown function compare
PP_5453 -1.0 -0.9 conserved protein of unknown function compare
PP_4952 -1.0 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3460 -1.0 -1.5 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4930 -1.0 -1.4 putative small multidrug resistance protein compare
PP_1116 -1.0 -3.4 Site-specific recombinase, resolvase family compare
PP_5451 -1.0 -2.7 protein of unknown function compare
PP_2714 -1.0 -2.3 Sensor histidine kinase compare
PP_4094 -1.0 -1.2 conserved protein of unknown function compare
PP_3923 -1.0 -2.5 Phosphoglycerate mutase compare
PP_5233 -1.0 -2.8 ammonium transporter AmtB compare
PP_2756 -1.0 -1.9 conserved protein of unknown function compare
PP_5359 -1.0 -1.1 CobW/P47K family protein compare
PP_5188 -1.0 -2.6 putative transcriptional regulator (AsnC/Lrp family) compare
PP_5243 -1.0 -1.8 putative hydrolase compare
PP_2337 -0.9 -0.6 aconitate isomerase compare
PP_5110 -0.9 -0.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4597 -0.9 -1.4 Cyclic pyranopterin monophosphate synthase compare
PP_5SB -0.9 -2.4 5S ribosomal RNA compare
PP_2132 -0.9 -1.4 Universal stress protein compare
PP_0705 -0.9 -1.9 DNA-3-methyladenine glycosylase compare
PP_4499 -0.9 -1.7 putative maturation enzyme compare
PP_4317 -0.9 -1.0 conserved protein of unknown function compare
PP_4488 -0.9 -2.5 conserved exported protein of unknown function compare
PP_0965 -0.9 -4.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0117 -0.9 -2.9 Zn(2+) ABC transporter - permease subunit compare
PP_4502 -0.9 -2.5 putative enzyme compare
PP_2025 -0.9 -2.1 Exonuclease SbcD compare
PP_2665 -0.9 -1.4 Glycerol metabolism activator compare
PP_1872 -0.9 -3.2 glutamate-pyruvate aminotransferase compare
PP_1054 -0.9 -1.1 Type II secretion pathway protein XcpZ compare
PP_0151 -0.9 -1.4 conserved exported protein of unknown function compare
PP_0908 -0.9 -2.9 conserved exported protein of unknown function compare
PP_3407 -0.9 -1.6 conserved protein of unknown function compare
PP_2824 -0.9 -1.5 Transcriptional regulator, TetR family compare
PP_0125 -0.9 -1.4 putative cytochrome c-type protein compare
PP_2778 -0.9 -2.6 3-oxoacyl-(Acyl-carrier-protein) synthase II compare
PP_0628 -0.9 -0.9 conserved protein of unknown function compare
PP_3524 -0.9 -1.8 conserved protein of unknown function compare
PP_1479 -0.9 -1.9 HicB protein compare
PP_1654 -0.9 -0.9 cysteine synthase B compare
PP_4997 -0.9 -0.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5317 -0.9 -1.6 Probable chorismate pyruvate-lyase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source 2,6-diaminopimelic acid in Pseudomonas putida KT2440

For nitrogen source 2,6-diaminopimelic acid across organisms