Experiment set29IT014 for Pseudomonas putida KT2440

Compare to:

DL-3-Aminoisobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0596 -6.6 -4.5 Omega-amino acid--pyruvate aminotransferase compare
PP_4723 -6.4 -21.1 Carbamoyl-phosphate synthase large chain compare
PP_5047 -6.4 -4.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4890 -6.4 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -6.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_0595 -6.3 -7.5 Transcriptional regulator, LysR family compare
PP_4724 -6.2 -9.4 Carbamoyl-phosphate synthase small chain compare
PP_1988 -5.8 -10.5 3-isopropylmalate dehydrogenase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -5.7 -8.7 Argininosuccinate synthase compare
PP_4678 -5.6 -12.5 Ketol-acid reductoisomerase compare
PP_4909 -5.6 -5.4 phosphoserine phosphatase compare
PP_5075 -5.5 -9.3 glutamate synthase (NADPH) beta subunit compare
PP_4680 -5.5 -10.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5048 -5.5 -8.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1995 -5.5 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5076 -5.4 -15.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_5289 -5.4 -3.7 Acetylglutamate kinase compare
PP_1985 -5.4 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_5098 -5.3 -8.2 methionine biosynthesis protein MetW compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -5.2 -10.5 Histidinol dehydrogenase compare
PP_0184 -5.2 -3.6 Argininosuccinate lyase compare
PP_0967 -5.1 -10.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -5.1 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1079 -5.0 -3.5 Ornithine carbamoyltransferase compare
PP_0420 -5.0 -10.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -5.0 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -5.0 -17.9 Anthranilate synthase component 1 compare
PP_5097 -4.8 -12.9 homoserine O-acetyltransferase compare
PP_4999 -4.7 -3.3 dihydroorotase-like protein compare
PP_1231 -4.7 -7.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_2327 -4.6 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4700 -4.5 -4.4 pantothenate synthetase compare
PP_4699 -4.5 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2168 -4.5 -9.9 Transaldolase compare
PP_5346 -4.4 -11.1 pyruvate carboxylase subunit B compare
PP_5185 -4.4 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2001 -4.3 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_0965 -4.3 -11.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -4.2 -8.5 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_3511 -4.1 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_5015 -4.1 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2371 -4.0 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_0289 -3.9 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_1589 -3.9 -7.9 uridylyltransferase compare
PP_5347 -3.8 -11.8 pyruvate carboxylase subunit A compare
PP_5348 -3.8 -11.6 Transcriptional regulator, LysR family compare
PP_0787 -3.7 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0339 -3.6 -5.5 Pyruvate dehydrogenase E1 component compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5128 -3.5 -6.9 Dihydroxy-acid dehydratase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2337 -3.4 -2.3 aconitate isomerase compare
PP_5303 -3.3 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3999 -3.3 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1025 -3.1 -9.5 2-isopropylmalate synthase compare
PP_2328 -3.0 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_0362 -2.9 -12.9 Biotin synthase compare
PP_4271 -2.9 -1.3 conserved protein of unknown function compare
PP_2433 -2.8 -3.4 conserved protein of unknown function compare
PP_4058 -2.8 -12.1 1,4-alpha-glucan branching enzyme compare
PP_4782 -2.8 -5.1 Phosphomethylpyrimidine kinase compare
PP_5155 -2.8 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2088 -2.8 -6.2 RNA polymerase sigma factor SigX compare
PP_2370 -2.8 -3.1 conserved protein of unknown function compare
PP_0691 -2.7 -6.6 Glutamate 5-kinase compare
PP_5104 -2.7 -6.6 thiazole synthase compare
PP_4364 -2.5 -4.7 putative Anti-sigma F factor antagonist compare
PP_3245 -2.5 -2.2 conserved protein of unknown function compare
PP_5271 -2.5 -5.6 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_1233 -2.4 -4.6 sulfurtransferase compare
PP_2334 -2.3 -5.7 2-methylisocitrate lyase compare
PP_1022 -2.2 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_0291 -2.0 -2.6 conserved protein of unknown function compare
PP_4922 -2.0 -10.6 Phosphomethylpyrimidine synthase compare
PP_2335 -2.0 -8.6 methylcitrate synthase compare
PP_0127 -2.0 -7.6 Thiol:disulfide interchange protein compare
PP_4789 -2.0 -5.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5095 -1.9 -2.9 pyrroline-5-carboxylate reductase compare
PP_2378 -1.9 -2.5 Fe/S biogenesis protein NfuA compare
PP_2336 -1.9 -1.3 aconitate hydratase 1 compare
PP_1468 -1.9 -1.8 Tyrosine recombinase XerD compare
PP_5322 -1.8 -7.5 putative metal ion transporter compare
PP_1362 -1.8 -2.9 pyruvate kinase II compare
PP_3052 -1.8 -1.4 conserved protein of unknown function compare
PP_0593 -1.8 -1.6 putative ribosome-binding factor compare
PP_0597 -1.7 -10.1 methylmalonate-semialdehyde dehydrogenase compare
PP_3924 -1.7 -4.6 conserved protein of unknown function compare
PP_1664 -1.7 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_1654 -1.6 -2.5 cysteine synthase B compare
PP_5216 -1.6 -3.2 exopolyphosphatase compare
PP_0435 -1.6 -12.6 Peptidase, M23/M37 family compare
PP_3946 -1.6 -1.8 HTH-type transcriptional repressor NicR compare
PP_0735 -1.5 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_0948 -1.5 -2.1 Phosphocarrier protein HPr compare
PP_5331 -1.5 -4.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4943 -1.5 -2.2 putative Glycosyl transferase compare
PP_4130 -1.5 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5453 -1.5 -2.1 conserved protein of unknown function compare
PP_1198 -1.5 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1629 -1.5 -2.6 Protein RecA compare
PP_5217 -1.5 -12.6 Polyphosphate kinase compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4984 -1.4 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2402 -1.4 -2.5 putative Sensor histidine kinase compare
PP_4098 -1.4 -1.6 UvrABC system protein C compare
PP_0001 -1.4 -1.6 probable chromosome-partitioning protein compare
PP_4964 -1.4 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1348 -1.3 -4.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1410 -1.3 -1.2 conserved protein of unknown function compare
PP_4797 -1.3 -2.0 conserved protein of unknown function compare
PP_2999 -1.3 -1.4 Glyoxalase family protein compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_1493 -1.3 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_5233 -1.3 -5.3 ammonium transporter AmtB compare
PP_4696 -1.3 -4.0 Nitrogen regulation protein NR(I) compare
PP_4895 -1.3 -2.6 tRNA dimethylallyltransferase compare
PP_0364 -1.3 -7.2 pimeloyl-[acp] methyl ester esterase compare
PP_5270 -1.3 -3.6 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_1764 -1.3 -4.8 Phosphoglycolate phosphatase 2 compare
PP_2414 -1.3 -1.3 conserved exported protein of unknown function compare
PP_0363 -1.3 -8.1 8-amino-7-oxononanoate synthase compare
PP_1439 -1.2 -1.4 conserved exported protein of unknown function compare
PP_3244 -1.2 -3.5 Magnesium transporter, MgtC family compare
PP_0653 -1.2 -1.3 conserved protein of unknown function compare
PP_5328 -1.2 -3.3 putative phosphate transport system permease protein compare
PP_0414 -1.2 -5.4 Polyamine ABC transporter, permease protein compare
PP_4004 -1.2 -1.9 DNA translocase FtsK compare
PP_2217 -1.2 -1.9 enoyl-CoA hydratase compare
PP_5203 -1.2 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_3808 -1.1 -2.8 Antibiotic synthesis protein MbtH compare
PP_2000 -1.1 -1.1 amidophosphoribosyl transferase compare
PP_3286 -1.1 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0406 -1.1 -2.5 Nucleotidyltransferase family protein compare
PP_0365 -1.1 -6.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0833 -1.1 -2.2 queuine tRNA-ribosyltransferase compare
PP_0949 -1.1 -3.5 putative ATP-binding protein UPF0042 compare
PP_1224 -1.1 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_0513 -1.1 -3.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1697 -1.1 -2.6 transcriptional regulator, GntR family compare
PP_3247 -1.1 -2.7 Transporter, bile acid/Na+ symporter family compare
PP_2324 -1.1 -5.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0914 -1.0 -5.7 GGDEF domain protein compare
PP_0980 -1.0 -3.8 Probable cytosol aminopeptidase compare
PP_0366 -1.0 -5.8 dethiobiotin synthetase compare
PP_4120 -1.0 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_0164 -1.0 -4.7 conserved protein of unknown function compare
PP_1678 -1.0 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2499 -1.0 -0.7 conserved protein of unknown function compare
PP_5017 -1.0 -0.9 Sec-independent protein translocase protein TatB compare
PP_5571 -1.0 -1.5 conserved protein of unknown function compare
PP_4938 -1.0 -5.2 putative Glycosyl transferase compare
PP_2229 -1.0 -2.2 putative K(+)/H(+) antiporter subunit C compare
PP_0307 -1.0 -1.7 conserved exported protein of unknown function compare
PP_4902 -1.0 -1.3 Oligoribonuclease compare
PP_5146 -1.0 -5.3 RNA pyrophosphohydrolase compare
PP_4936 -1.0 -4.4 O-antigen polymerase compare
PP_1733 -1.0 -0.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4961 -1.0 -1.6 putative Lipoprotein compare
PP_5661 -1.0 -2.5 putative lipoprotein compare
PP_5350 -1.0 -2.8 Transcriptional regulator, RpiR family compare
PP_0957 -0.9 -1.1 D-arabinose 5-phosphate isomerase compare
PP_3790 -0.9 -4.4 diaminopimelate epimerase compare
PP_1702 -0.9 -2.2 Recombination-associated protein RdgC compare
PP_3105 -0.9 -1.9 conserved membrane protein of unknown function compare
PP_3409 -0.9 -1.3 putative Cobalamin biosynthesis protein cobE compare
PP_5145 -0.9 -7.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1322 -0.9 -1.4 putative Lipoprotein compare
PP_0319 -0.9 -1.3 conserved protein of unknown function compare
PP_1355 -0.9 -7.8 Muropeptide permease AmpG compare
PP_5230 -0.9 -2.7 Tyrosine recombinase XerC compare
PP_0809 -0.9 -5.0 disulfide bond formation protein B compare
PP_2322 -0.9 -3.9 Major outer membrane lipoprotein compare
PP_5110 -0.9 -0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4827 -0.9 -5.3 Precorrin-2 C(20)-methyltransferase compare
PP_1673 -0.9 -4.3 cobyrinate a,c-diamide synthase compare
PP_4832 -0.9 -2.1 Precorrin-6x reductase compare
PP_2307 -0.9 -1.4 conserved protein of unknown function compare
PP_3192 -0.9 -2.7 conserved protein of unknown function compare
PP_0789 -0.9 -2.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1802 -0.9 -6.5 glycosyl transferase compare
PP_1829 -0.9 -1.7 Hydrolase, alpha/beta fold family compare
PP_2929 -0.9 -5.2 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3662 -0.8 -4.3 conserved protein of unknown function compare
PP_2345 -0.8 -1.6 conserved exported protein of unknown function compare
PP_2302 -0.8 -2.2 DNA-binding, ATP-dependent protease compare
PP_0547 -0.8 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4368 -0.8 -3.1 flagellar motor switch protein compare
PP_2375 -0.8 -5.2 cobalamin-dependent methionine synthase compare
PP_1303 -0.8 -4.7 Sulfate adenylyltransferase subunit 2 compare
PP_0874 -0.8 -1.6 conserved protein of unknown function compare
PP_5085 -0.8 -3.8 malic enzyme B compare
PP_1676 -0.8 -4.3 subunit of adenosylcobinamide-phosphate synthase beta component compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source DL-3-Aminoisobutyric acid in Pseudomonas putida KT2440

For nitrogen source DL-3-Aminoisobutyric acid across organisms