Experiment set29IT013 for Pseudomonas putida KT2440

Compare to:

Caprolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.0 -4.1 Indole-3-glycerol phosphate synthase compare
PP_0290 -5.3 -5.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -5.3 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -5.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -4.9 -5.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -4.8 -13.5 Ketol-acid reductoisomerase compare
PP_1988 -4.8 -10.7 3-isopropylmalate dehydrogenase compare
PP_4680 -4.7 -11.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -4.6 -17.0 Anthranilate synthase component 1 compare
PP_3511 -4.6 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_1986 -4.3 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_1088 -4.3 -12.7 Argininosuccinate synthase compare
PP_5185 -4.3 -7.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -4.3 -5.8 Argininosuccinate lyase compare
PP_4723 -4.2 -18.1 Carbamoyl-phosphate synthase large chain compare
PP_0420 -4.2 -11.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -4.1 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2168 -4.0 -9.0 Transaldolase compare
PP_2433 -4.0 -3.9 conserved protein of unknown function compare
PP_5075 -4.0 -13.1 glutamate synthase (NADPH) beta subunit compare
PP_4058 -3.8 -10.5 1,4-alpha-glucan branching enzyme compare
PP_1985 -3.8 -4.9 3-isopropylmalate dehydratase large subunit compare
PP_0082 -3.8 -2.6 tryptophan synthase alpha chain compare
PP_5097 -3.7 -12.8 homoserine O-acetyltransferase compare
PP_5098 -3.7 -9.5 methionine biosynthesis protein MetW compare
PP_0293 -3.7 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -3.7 -10.5 Carbamoyl-phosphate synthase small chain compare
PP_1778 -3.6 -3.5 Lipopolysaccharide ABC export system, permease protein compare
PP_5289 -3.6 -4.9 Acetylglutamate kinase compare
PP_0289 -3.5 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -3.5 -8.7 O-succinylhomoserine sulfhydrylase compare
PP_5076 -3.5 -17.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_0966 -3.4 -11.0 Histidinol dehydrogenase compare
PP_4890 -3.4 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -3.3 -3.2 dihydroorotase-like protein compare
PP_0339 -3.3 -6.4 Pyruvate dehydrogenase E1 component compare
PP_0421 -3.3 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5048 -3.3 -6.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0691 -3.2 -5.5 Glutamate 5-kinase compare
PP_0083 -3.2 -4.4 tryptophan synthase beta chain compare
PP_5014 -3.2 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -3.2 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4364 -3.2 -4.1 putative Anti-sigma F factor antagonist compare
PP_2371 -3.1 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4799 -3.1 -2.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5128 -3.0 -7.2 Dihydroxy-acid dehydratase compare
PP_3821 -3.0 -11.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5015 -2.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1231 -2.9 -7.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -2.8 -4.7 Ornithine carbamoyltransferase compare
PP_2307 -2.8 -2.4 conserved protein of unknown function compare
PP_4909 -2.8 -7.8 phosphoserine phosphatase compare
PP_5095 -2.7 -2.8 pyrroline-5-carboxylate reductase compare
PP_1779 -2.7 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1025 -2.7 -10.3 2-isopropylmalate synthase compare
PP_4696 -2.7 -4.0 Nitrogen regulation protein NR(I) compare
PP_2370 -2.6 -5.2 conserved protein of unknown function compare
PP_0164 -2.6 -9.3 conserved protein of unknown function compare
PP_2740 -2.6 -2.0 Transcriptional regulator, MerR family compare
PP_1589 -2.5 -8.4 uridylyltransferase compare
PP_1198 -2.5 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5145 -2.4 -14.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3105 -2.4 -3.0 conserved membrane protein of unknown function compare
PP_3999 -2.3 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -2.3 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0127 -2.2 -5.0 Thiol:disulfide interchange protein compare
PP_4060 -2.2 -13.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4943 -2.2 -2.1 putative Glycosyl transferase compare
PP_2088 -2.2 -5.5 RNA polymerase sigma factor SigX compare
PP_2328 -2.1 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_2302 -2.0 -2.8 DNA-binding, ATP-dependent protease compare
PP_5047 -2.0 -4.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1233 -1.9 -3.1 sulfurtransferase compare
PP_4762 -1.9 -7.0 Acyl-CoA thioesterase II compare
PP_5232 -1.9 -2.0 conserved protein of unknown function compare
PP_1293 -1.8 -1.6 molybdopterin synthase small subunit compare
PP_1493 -1.8 -4.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1428 -1.8 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_1224 -1.8 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_2044 -1.8 -1.2 conserved inner membrane protein of unknown function compare
PP_0787 -1.7 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2322 -1.6 -8.2 Major outer membrane lipoprotein compare
PP_3377 -1.5 -9.2 2-ketogluconate transporter, putative compare
PP_0214 -1.5 -5.5 4-aminobutyrate aminotransferase compare
PP_2581 -1.5 -1.6 conserved protein of unknown function compare
PP_5072 -1.4 -8.1 efflux transporter compare
PP_2229 -1.4 -2.0 putative K(+)/H(+) antiporter subunit C compare
PP_0949 -1.4 -4.1 putative ATP-binding protein UPF0042 compare
PP_1804 -1.4 -8.6 Glycosyl transferase WbpL compare
PP_4143 -1.4 -3.4 conserved protein of unknown function compare
PP_5104 -1.4 -4.8 thiazole synthase compare
PP_0653 -1.3 -1.3 conserved protein of unknown function compare
PP_0247 -1.3 -6.7 Osmolarity sensor protein EnvZ compare
PP_4695 -1.3 -7.1 Sensory box histidine kinase compare
PP_1801 -1.3 -7.9 Glycosyl transferase WbpY compare
PP_4782 -1.3 -3.3 Phosphomethylpyrimidine kinase compare
PP_0435 -1.3 -10.1 Peptidase, M23/M37 family compare
PP_4993 -1.2 -2.7 Glutathione synthetase compare
PP_1826 -1.2 -2.0 Hydrolase, isochorismatase family compare
PP_2320 -1.2 -9.1 conserved exported protein of unknown function compare
PP_4938 -1.2 -4.8 putative Glycosyl transferase compare
PP_4940 -1.2 -4.4 Putative glycosyltransferase compare
PP_2070 -1.2 -3.0 Transcriptional regulator, AraC family compare
PP_2323 -1.2 -7.1 conserved protein of unknown function compare
PP_4120 -1.2 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_2378 -1.2 -1.7 Fe/S biogenesis protein NfuA compare
PP_1020 -1.2 -2.9 putative glucose-6-phosphate 1-epimerase compare
PP_5090 -1.2 -2.5 putative cell division protein compare
PP_2999 -1.1 -1.2 Glyoxalase family protein compare
PP_1022 -1.1 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_3048 -1.1 -2.2 conserved protein of unknown function compare
PP_1362 -1.1 -2.1 pyruvate kinase II compare
PP_0719 -1.1 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1654 -1.0 -2.2 cysteine synthase B compare
PP_t10 -1.0 -1.7 tRNA-Pro compare
PP_1802 -1.0 -7.9 glycosyl transferase compare
PP_4891 -1.0 -2.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1805 -1.0 -7.8 Polysaccharide biosynthesis protein compare
PP_5528 -1.0 -1.2 conserved protein of unknown function compare
PP_5346 -1.0 -4.8 pyruvate carboxylase subunit B compare
PP_0750 -1.0 -3.6 conserved protein of unknown function compare
PP_4874 -1.0 -0.9 50S ribosomal protein L9 compare
PP_2000 -1.0 -0.7 amidophosphoribosyl transferase compare
PP_2073 -1.0 -2.5 Acetyltransferase, GNAT family compare
PP_3924 -1.0 -3.1 conserved protein of unknown function compare
PP_1860 -1.0 -3.7 Organic hydroperoxide resistance transcriptional regulator compare
PP_3380 -1.0 -2.2 2-ketogluconate utilization repressor compare
PP_1096 -1.0 -1.3 putative electron transport complex protein compare
PP_2616 -1.0 -2.1 conserved protein of unknown function compare
PP_4922 -1.0 -4.8 Phosphomethylpyrimidine synthase compare
PP_4994 -1.0 -3.7 conserved protein of unknown function compare
PP_2327 -0.9 -2.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5347 -0.9 -5.1 pyruvate carboxylase subunit A compare
PP_3318 -0.9 -1.3 conserved protein of unknown function compare
PP_0738 -0.9 -1.2 conserved protein of unknown function compare
PP_3715 -0.9 -2.6 Muconate cycloisomerase 1 compare
PP_4504 -0.9 -0.9 conserved exported protein of unknown function compare
PP_5094 -0.9 -3.2 putative enzyme with PLP binding domain compare
PP_2337 -0.9 -1.4 aconitate isomerase compare
PP_0547 -0.9 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3522 -0.9 -1.1 conserved protein of unknown function compare
PP_2499 -0.9 -0.9 conserved protein of unknown function compare
PP_0856 -0.9 -1.9 conserved lipoprotein of unknown function compare
PP_1523 -0.9 -2.2 conserved protein of unknown function compare
PP_1917 -0.9 -4.5 4-amino-4-deoxychorismate lyase compare
PP_4265 -0.9 -1.6 DNA-binding transcriptional dual regulator compare
PP_3883 -0.9 -2.3 putative Phage holin compare
PP_1381 -0.9 -0.9 4-carboxymuconolactone decarboxylase compare
PP_1780 -0.9 -7.5 putative mannosyltransferase compare
PP_5558 -0.9 -3.1 putative transcriptional xre family of phage origin compare
PP_3411 -0.9 -0.8 conserved protein of unknown function compare
PP_3409 -0.9 -1.2 putative Cobalamin biosynthesis protein cobE compare
PP_0401 -0.9 -1.9 Ribosomal RNA small subunit methyltransferase A compare
PP_1522 -0.9 -3.1 major cold shock protein compare
PP_4936 -0.8 -3.6 O-antigen polymerase compare
PP_5233 -0.8 -3.5 ammonium transporter AmtB compare
PP_1776 -0.8 -6.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5322 -0.8 -3.7 putative metal ion transporter compare
PP_5058 -0.8 -3.7 Carboxy-terminal-processing protease compare
PP_2932 -0.8 -5.5 Amidase family protein compare
PP_5182 -0.8 -3.1 polyamine:pyruvate transaminase compare
PP_5445 -0.8 -1.6 conserved protein of unknown function compare
PP_5704 -0.8 -2.6 conserved protein of unknown function compare
PP_1799 -0.8 -5.6 GDP-mannose 4,6-dehydratase compare
PP_3453 -0.8 -5.0 putative Sensor protein RstB compare
PP_5167 -0.8 -1.6 conserved hypothetical protein compare
PP_0246 -0.8 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_1629 -0.8 -1.8 Protein RecA compare
PP_3506 -0.8 -2.4 Magnesium chelatase, subunit ChII compare
PP_4133 -0.8 -1.9 Transcriptional regulator-related protein compare
PP_4126 -0.8 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_0833 -0.8 -1.6 queuine tRNA-ribosyltransferase compare
PP_3243 -0.8 -2.1 Acetyltransferase, GNAT family compare
PP_0406 -0.8 -2.2 Nucleotidyltransferase family protein compare
PP_3825 -0.8 -2.7 conserved protein of unknown function compare
PP_1800 -0.8 -4.7 Oxidoreductase Rmd compare
PP_2848 -0.8 -2.0 urease accessory protein compare
PP_4845 -0.8 -3.0 putative Urea ABC transporter, ATP-binding protein compare
PP_4561 -0.8 -0.8 stress response protein compare
PP_1054 -0.8 -0.9 Type II secretion pathway protein XcpZ compare
PP_4196 -0.8 -1.1 conserved exported protein of unknown function compare
PP_3919 -0.8 -1.7 conserved protein of unknown function compare
PP_5350 -0.8 -2.3 Transcriptional regulator, RpiR family compare
PP_5507 -0.7 -1.8 protein of unknown function compare
PP_0789 -0.7 -2.6 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5183 -0.7 -2.0 glutamylpolyamine synthetase compare
PP_3081 -0.7 -2.1 conserved protein of unknown function compare
PP_1562 -0.7 -1.1 putative Phage terminase, small subunit compare
PP_0948 -0.7 -1.2 Phosphocarrier protein HPr compare
PP_1836 -0.7 -2.4 putative metal transporter, ZIP family compare
PP_3726 -0.7 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1430 -0.7 -3.4 putative periplasmic serine endoprotease DegP-like compare
PP_4964 -0.7 -0.8 D-erythrose 4-phosphate dehydrogenase compare
PP_5181 -0.7 -5.1 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_4910 -0.7 -0.7 conserved protein of unknown function compare
PP_5110 -0.7 -1.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1142 -0.7 -0.5 conserved protein of unknown function compare
PP_3637 -0.7 -0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4296 -0.7 -0.9 conserved exported protein of unknown function compare
PP_2145 -0.7 -3.7 beta-N-acetylglucosaminidase compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source Caprolactam in Pseudomonas putida KT2440

For nitrogen source Caprolactam across organisms