Experiment set29IT007 for Pseudomonas putida KT2440

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -7.8 -9.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.6 -18.4 Carbamoyl-phosphate synthase large chain compare
PP_0422 -6.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_4890 -6.1 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_1988 -6.1 -8.3 3-isopropylmalate dehydrogenase compare
PP_0787 -6.1 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4678 -5.9 -10.6 Ketol-acid reductoisomerase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0966 -5.8 -7.9 Histidinol dehydrogenase compare
PP_1995 -5.7 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -5.7 -10.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1088 -5.7 -7.8 Argininosuccinate synthase compare
PP_1985 -5.7 -5.5 3-isopropylmalate dehydratase large subunit compare
PP_0290 -5.6 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2001 -5.6 -12.5 O-succinylhomoserine sulfhydrylase compare
PP_0417 -5.5 -14.8 Anthranilate synthase component 1 compare
PP_4909 -5.5 -5.4 phosphoserine phosphatase compare
PP_3511 -5.4 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_4679 -5.4 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -5.4 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0967 -5.4 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_5097 -5.2 -11.2 homoserine O-acetyltransferase compare
PP_5185 -5.1 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -5.1 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -5.0 -3.5 Ornithine carbamoyltransferase compare
PP_0965 -5.0 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.9 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0184 -4.9 -4.7 Argininosuccinate lyase compare
PP_0291 -4.8 -4.7 conserved protein of unknown function compare
PP_0691 -4.8 -8.0 Glutamate 5-kinase compare
PP_4999 -4.7 -3.3 dihydroorotase-like protein compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_2327 -4.7 -9.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5128 -4.6 -8.2 Dihydroxy-acid dehydratase compare
PP_0289 -4.6 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0421 -4.5 -8.7 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.4 -9.4 methionine biosynthesis protein MetW compare
PP_2371 -4.3 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_5155 -3.9 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_2388 -3.9 -5.3 Transporter, LysE family compare
PP_5303 -3.8 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4700 -3.8 -5.2 pantothenate synthetase compare
PP_0888 -3.8 -3.7 Photosynthetic apparatus regulatory protein RegA compare
PP_0339 -3.7 -6.2 Pyruvate dehydrogenase E1 component compare
PP_1664 -3.7 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1025 -3.6 -11.2 2-isopropylmalate synthase compare
PP_3999 -3.5 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_3598 -3.5 -12.8 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) compare
PP_5104 -3.3 -8.4 thiazole synthase compare
PP_5278 -3.2 -5.7 4-guanidinobutyraldehyde dehydrogenase conserved
PP_5184 -3.2 -8.9 glutamylpolyamine synthetase conserved
PP_0214 -3.2 -7.6 4-aminobutyrate aminotransferase compare
PP_1912 -3.1 -6.7 Phosphate acyltransferase compare
PP_2448 -3.1 -11.5 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
PP_1110 -3.1 -4.9 serine acetyltransferase compare
PP_4961 -3.0 -2.8 putative Lipoprotein compare
PP_4799 -2.9 -5.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4271 -2.9 -1.4 conserved protein of unknown function compare
PP_1426 -2.7 -11.5 L-aspartate oxidase compare
PP_2328 -2.7 -5.1 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.7 -2.5 conserved protein of unknown function compare
PP_2390 -2.6 -5.8 Transcriptional regulator, LysR family compare
PP_4696 -2.6 -4.9 Nitrogen regulation protein NR(I) compare
PP_1233 -2.5 -4.5 sulfurtransferase compare
PP_1109 -2.3 -11.4 Transcriptional regulator, GntR family compare
PP_4874 -2.3 -1.6 50S ribosomal protein L9 compare
PP_1022 -2.3 -4.3 glucose 6-phosphate-1-dehydrogenase compare
PP_0834 -2.3 -2.9 Sec translocation complex subunit YajC compare
PP_1348 -2.2 -6.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4922 -2.2 -10.0 Phosphomethylpyrimidine synthase compare
PP_0362 -2.2 -11.4 Biotin synthase compare
PP_1111 -2.2 -7.2 putative Synthetase compare
PP_5528 -2.0 -1.9 conserved protein of unknown function compare
PP_0735 -2.0 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5095 -2.0 -3.2 pyrroline-5-carboxylate reductase compare
PP_1303 -1.9 -8.3 Sulfate adenylyltransferase subunit 2 compare
PP_5216 -1.8 -2.4 exopolyphosphatase compare
PP_3098 -1.7 -1.6 conserved protein of unknown function compare
PP_4098 -1.7 -1.6 UvrABC system protein C compare
PP_4782 -1.7 -4.2 Phosphomethylpyrimidine kinase compare
PP_4910 -1.7 -1.1 conserved protein of unknown function compare
PP_3409 -1.5 -2.4 putative Cobalamin biosynthesis protein cobE compare
PP_3790 -1.5 -6.5 diaminopimelate epimerase compare
PP_0246 -1.5 -1.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_2402 -1.5 -2.6 putative Sensor histidine kinase compare
PP_4546 -1.5 -3.7 ATP-dependent helicase HrpA compare
PP_5350 -1.5 -3.8 Transcriptional regulator, RpiR family compare
PP_3590 -1.5 -7.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0719 -1.4 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4917 -1.4 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2000 -1.4 -0.9 amidophosphoribosyl transferase compare
PP_3241 -1.4 -1.6 conserved exported protein of unknown function compare
PP_4122 -1.3 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1362 -1.3 -2.3 pyruvate kinase II compare
PP_1366 -1.3 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4984 -1.3 -7.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3105 -1.2 -1.7 conserved membrane protein of unknown function compare
PP_1729 -1.2 -1.4 conserved protein of unknown function compare
PP_1237 -1.2 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4964 -1.2 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_5322 -1.2 -5.6 putative metal ion transporter compare
PP_0957 -1.2 -1.9 D-arabinose 5-phosphate isomerase compare
PP_1128 -1.1 -2.3 OmpA family protein compare
PP_0846 -1.1 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_4699 -1.1 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1454 -1.1 -2.6 conserved protein of unknown function compare
PP_1304 -1.1 -6.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4120 -1.1 -1.8 NADH-quinone oxidoreductase subunit B compare
PP_0363 -1.1 -7.4 8-amino-7-oxononanoate synthase compare
PP_5075 -1.1 -7.0 glutamate synthase (NADPH) beta subunit compare
PP_0364 -1.0 -4.8 pimeloyl-[acp] methyl ester esterase compare
PP_5227 -1.0 -4.9 diaminopimelate decarboxylase compare
PP_0065 -1.0 -2.5 NAD-binding component of TrK potassium transporter compare
PP_4684 -1.0 -5.2 conserved protein of unknown function with kinase-like domain compare
PP_1702 -1.0 -2.8 Recombination-associated protein RdgC compare
PP_5017 -1.0 -1.0 Sec-independent protein translocase protein TatB compare
PP_1214 -1.0 -1.2 putative transcriptional regulatory protein compare
PP_5110 -1.0 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4004 -1.0 -1.7 DNA translocase FtsK compare
PP_0122 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5393 -1.0 -0.9 putative metal-binding chaperone compare
PP_5475 -1.0 -1.3 conserved protein of unknown function compare
PP_0628 -1.0 -2.4 conserved protein of unknown function compare
PP_3417 -1.0 -3.1 D-gluconate transporter compare
PP_0025 -1.0 -1.0 hypothetical protein compare
PP_2336 -1.0 -1.6 aconitate hydratase 1 compare
PP_2389 -1.0 -1.8 conserved protein of unknown function compare
PP_4789 -0.9 -3.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_3244 -0.9 -3.1 Magnesium transporter, MgtC family compare
PP_1770 -0.9 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_0673 -0.9 -1.5 conserved protein of unknown function compare
PP_0366 -0.9 -5.3 dethiobiotin synthetase compare
PP_5114 -0.9 -0.9 putative adenine methyltransferase compare
PP_2144 -0.9 -2.6 Transcriptional regulator, TetR family compare
PP_2999 -0.9 -1.2 Glyoxalase family protein compare
PP_2378 -0.9 -1.6 Fe/S biogenesis protein NfuA compare
PP_4895 -0.9 -2.0 tRNA dimethylallyltransferase compare
PP_0365 -0.9 -4.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4829 -0.9 -2.6 putative precorrin-3B synthase compare
PP_1629 -0.9 -2.0 Protein RecA compare
PP_5331 -0.9 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4364 -0.9 -2.0 putative Anti-sigma F factor antagonist compare
PP_2337 -0.8 -1.4 aconitate isomerase compare
PP_2640 -0.8 -2.1 Acetyltransferase, GNAT family compare
PP_4707 -0.8 -1.6 OsmY-related protein compare
PP_4008 -0.8 -3.7 ATP-dependent serine protease compare
PP_0127 -0.8 -4.1 Thiol:disulfide interchange protein compare
PP_3840 -0.8 -0.9 conserved protein of unknown function compare
PP_0832 -0.8 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1055 -0.8 -0.6 Type II secretion pathway protein GspN compare
PP_1994 -0.8 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_1677 -0.8 -3.7 Adenosyl-cobyric acid synthase compare
PP_2414 -0.8 -1.4 conserved exported protein of unknown function compare
PP_5337 -0.8 -3.0 LysR family transcriptional regulator compare
PP_4797 -0.8 -1.4 conserved protein of unknown function compare
PP_5027 -0.8 -1.3 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_2929 -0.8 -5.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3614 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_0627 -0.8 -1.3 conserved protein of unknown function compare
PP_2306 -0.8 -1.8 conserved exported protein of unknown function compare
PP_5338 -0.8 -1.4 aspartate ammonia-lyase compare
PP_5076 -0.8 -6.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_0001 -0.8 -0.9 probable chromosome-partitioning protein compare
PP_5035 -0.7 -3.3 Histidine utilization repressor compare
PP_4720 -0.7 -0.6 putative RNA binding protein compare
PP_0435 -0.7 -6.2 Peptidase, M23/M37 family compare
PP_0002 -0.7 -3.1 probable chromosome partition protein compare
PP_5704 -0.7 -2.5 conserved protein of unknown function compare
PP_2181 -0.7 -2.0 Transcriptional regulator, Cro/CI family compare
PP_2499 -0.7 -0.8 conserved protein of unknown function compare
PP_5533 -0.7 -1.0 conserved protein of unknown function compare
PP_3506 -0.7 -2.5 Magnesium chelatase, subunit ChII compare
PP_4642 -0.7 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_3380 -0.7 -1.3 2-ketogluconate utilization repressor compare
PP_1676 -0.7 -2.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1779 -0.7 -2.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2027 -0.7 -2.1 conserved exported protein of unknown function compare
PP_1672 -0.7 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5706 -0.7 -1.8 Sec translocation complex - SecG subunit compare
PP_5299 -0.7 -3.1 glutamate-putrescine ligase compare
PP_2324 -0.7 -4.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5329 -0.7 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3289 -0.7 -2.9 Acetyltransferase, GNAT family compare
PP_2581 -0.7 -1.1 conserved protein of unknown function compare
PP_3904 -0.7 -1.7 conserved protein of unknown function compare
PP_1824 -0.7 -0.9 Smr domain protein compare
PP_4591 -0.7 -1.9 Ribonuclease D compare
PP_4695 -0.7 -4.1 Sensory box histidine kinase compare
PP_0949 -0.7 -2.7 putative ATP-binding protein UPF0042 compare
PP_0276 -0.7 -0.9 Transcriptional regulator, Cro/CI family compare
PP_1216 -0.7 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0213 -0.6 -2.1 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_4507 -0.6 -4.1 potassium transporter compare
PP_2168 -0.6 -4.0 Transaldolase compare
PP_2655 -0.6 -1.8 conserved protein of unknown function compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas putida KT2440

For nitrogen source Putrescine Dihydrochloride across organisms