Experiment set29IT006 for Pseudomonas putida KT2440

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -8.2 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.9 -19.1 Carbamoyl-phosphate synthase large chain compare
PP_1988 -6.5 -7.7 3-isopropylmalate dehydrogenase compare
PP_0422 -6.4 -4.4 Indole-3-glycerol phosphate synthase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_0420 -6.0 -8.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0293 -5.9 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -5.9 -4.1 phosphoserine phosphatase compare
PP_5015 -5.8 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0967 -5.6 -9.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.6 -10.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.6 -9.3 Histidinol dehydrogenase compare
PP_0290 -5.5 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1231 -5.5 -5.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1088 -5.4 -10.5 Argininosuccinate synthase compare
PP_0417 -5.4 -16.7 Anthranilate synthase component 1 compare
PP_5097 -5.4 -11.0 homoserine O-acetyltransferase compare
PP_1995 -5.4 -6.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0691 -5.4 -8.2 Glutamate 5-kinase compare
PP_0292 -5.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4678 -5.2 -14.8 Ketol-acid reductoisomerase compare
PP_0787 -5.2 -5.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4679 -5.2 -7.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -5.1 -3.5 Ornithine carbamoyltransferase compare
PP_5185 -5.1 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -4.9 -4.8 Argininosuccinate lyase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_4890 -4.8 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -4.8 -4.6 Acetylglutamate kinase compare
PP_3511 -4.7 -10.5 Branched-chain-amino-acid aminotransferase compare
PP_2001 -4.7 -12.7 O-succinylhomoserine sulfhydrylase compare
PP_2371 -4.6 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5098 -4.6 -9.9 methionine biosynthesis protein MetW compare
PP_0965 -4.6 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -4.5 -9.2 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.3 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_2370 -4.3 -5.1 conserved protein of unknown function compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_5303 -4.2 -5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -4.1 -10.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3598 -4.0 -14.4 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) compare
PP_0083 -4.0 -2.7 tryptophan synthase beta chain compare
PP_4782 -3.9 -5.4 Phosphomethylpyrimidine kinase compare
PP_5128 -3.9 -6.4 Dihydroxy-acid dehydratase compare
PP_1986 -3.9 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_1025 -3.8 -11.9 2-isopropylmalate synthase compare
PP_3999 -3.7 -3.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2388 -3.7 -5.1 Transporter, LysE family compare
PP_1912 -3.7 -6.7 Phosphate acyltransferase compare
PP_5014 -3.6 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -3.6 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0291 -3.5 -5.8 conserved protein of unknown function compare
PP_5104 -3.3 -10.0 thiazole synthase compare
PP_4799 -3.3 -3.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0214 -3.3 -7.6 4-aminobutyrate aminotransferase compare
PP_1111 -3.1 -8.5 putative Synthetase compare
PP_5278 -3.0 -6.1 4-guanidinobutyraldehyde dehydrogenase conserved
PP_0339 -2.9 -7.3 Pyruvate dehydrogenase E1 component compare
PP_5184 -2.9 -6.6 glutamylpolyamine synthetase conserved
PP_2328 -2.9 -6.1 Phosphoadenosine phosphosulfate reductase compare
PP_1664 -2.8 -5.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1110 -2.8 -4.5 serine acetyltransferase compare
PP_4696 -2.8 -5.8 Nitrogen regulation protein NR(I) compare
PP_4700 -2.6 -5.3 pantothenate synthetase compare
PP_1233 -2.6 -4.7 sulfurtransferase compare
PP_2448 -2.6 -12.8 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
PP_1426 -2.5 -14.6 L-aspartate oxidase compare
PP_0735 -2.3 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1109 -2.2 -10.9 Transcriptional regulator, GntR family compare
PP_2390 -2.1 -5.8 Transcriptional regulator, LysR family compare
PP_4922 -2.1 -11.1 Phosphomethylpyrimidine synthase compare
PP_1348 -2.1 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1022 -2.1 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5095 -1.9 -3.3 pyrroline-5-carboxylate reductase compare
PP_2280 -1.8 -2.3 conserved protein of unknown function compare
PP_0846 -1.7 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_4364 -1.6 -3.4 putative Anti-sigma F factor antagonist compare
PP_1054 -1.6 -2.3 Type II secretion pathway protein XcpZ compare
PP_4917 -1.6 -4.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0001 -1.6 -1.4 probable chromosome-partitioning protein compare
PP_1826 -1.5 -2.4 Hydrolase, isochorismatase family compare
PP_5350 -1.5 -4.0 Transcriptional regulator, RpiR family compare
PP_5322 -1.5 -5.4 putative metal ion transporter compare
PP_0362 -1.5 -8.5 Biotin synthase compare
PP_5654 -1.5 -2.4 putative phosphotriesterase compare
PP_4874 -1.4 -1.3 50S ribosomal protein L9 compare
PP_0127 -1.4 -6.4 Thiol:disulfide interchange protein compare
PP_4943 -1.4 -2.2 putative Glycosyl transferase compare
PP_1366 -1.4 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0366 -1.3 -6.8 dethiobiotin synthetase compare
PP_5114 -1.3 -1.2 putative adenine methyltransferase compare
PP_2999 -1.3 -1.5 Glyoxalase family protein compare
PP_1629 -1.3 -2.9 Protein RecA compare
PP_4789 -1.3 -2.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4997 -1.3 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0401 -1.2 -2.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4910 -1.2 -1.1 conserved protein of unknown function compare
PP_2000 -1.2 -1.2 amidophosphoribosyl transferase compare
PP_1548 -1.2 -2.4 conserved protein of unknown function compare
PP_5483 -1.2 -1.5 conserved protein of unknown function compare
PP_0246 -1.2 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_3790 -1.2 -6.6 diaminopimelate epimerase compare
PP_5017 -1.2 -1.1 Sec-independent protein translocase protein TatB compare
PP_5453 -1.2 -1.9 conserved protein of unknown function compare
PP_1362 -1.2 -2.7 pyruvate kinase II compare
PP_3052 -1.1 -1.2 conserved protein of unknown function compare
PP_4004 -1.1 -1.8 DNA translocase FtsK compare
PP_1770 -1.1 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_3637 -1.1 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1045 -1.1 -1.0 Type II secretion pathway protein XcpP compare
PP_1304 -1.1 -7.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4984 -1.1 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0364 -1.1 -4.5 pimeloyl-[acp] methyl ester esterase compare
PP_1679 -1.1 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4895 -1.1 -2.2 tRNA dimethylallyltransferase compare
PP_5299 -1.1 -4.8 glutamate-putrescine ligase compare
PP_3590 -1.0 -5.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5456 -1.0 -1.3 conserved protein of unknown function compare
PP_1216 -1.0 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2389 -1.0 -2.4 conserved protein of unknown function compare
PP_5227 -1.0 -5.0 diaminopimelate decarboxylase compare
PP_t29 -1.0 -2.4 tRNA-Ala compare
PP_2414 -1.0 -1.5 conserved exported protein of unknown function compare
PP_5008 -1.0 -2.8 Poly granule-associated protein compare
PP_1303 -1.0 -5.1 Sulfate adenylyltransferase subunit 2 compare
PP_5076 -1.0 -7.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_1493 -1.0 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4387 -1.0 -2.2 conserved exported protein of unknown function compare
PP_0065 -1.0 -2.6 NAD-binding component of TrK potassium transporter compare
PP_5216 -1.0 -2.3 exopolyphosphatase compare
PP_1224 -1.0 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_1979 -1.0 -2.1 putative Hydrolase compare
PP_3286 -0.9 -3.5 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3244 -0.9 -3.2 Magnesium transporter, MgtC family compare
PP_4684 -0.9 -5.0 conserved protein of unknown function with kinase-like domain compare
PP_3398 -0.9 -1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4832 -0.9 -3.8 Precorrin-6x reductase compare
PP_4379 -0.9 -4.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4098 -0.9 -1.3 UvrABC system protein C compare
PP_5028 -0.9 -2.2 proline iminopeptidase compare
PP_3105 -0.9 -1.5 conserved membrane protein of unknown function compare
PP_2168 -0.9 -5.3 Transaldolase compare
PP_5295 -0.9 -1.3 conserved protein of unknown function compare
PP_0363 -0.9 -5.7 8-amino-7-oxononanoate synthase compare
PP_1829 -0.9 -1.6 Hydrolase, alpha/beta fold family compare
PP_0809 -0.9 -5.7 disulfide bond formation protein B compare
PP_1439 -0.9 -1.0 conserved exported protein of unknown function compare
PP_4830 -0.9 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_5075 -0.9 -5.7 glutamate synthase (NADPH) beta subunit compare
PP_0848 -0.9 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0435 -0.9 -7.0 Peptidase, M23/M37 family compare
PP_0695 -0.9 -2.8 conserved protein of unknown function compare
PP_5346 -0.9 -5.2 pyruvate carboxylase subunit B compare
PP_4561 -0.8 -1.0 stress response protein compare
PP_3614 -0.8 -2.1 conserved membrane protein of unknown function compare
PP_0117 -0.8 -3.3 Zn(2+) ABC transporter - permease subunit compare
PP_5225 -0.8 -1.3 frataxin compare
PP_2504 -0.8 -2.2 putative tautomerase K2 compare
PP_5652 -0.8 -1.9 conserved protein of unknown function, phage origin compare
PP_0003 -0.8 -1.8 16S RNA methyltransferase compare
PP_5748 -0.8 -1.4 cytochrome c heme lyase subunit compare
PP_0365 -0.8 -4.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1763 -0.8 -2.9 putative oxidoreductase compare
PP_2929 -0.8 -5.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5528 -0.8 -1.1 conserved protein of unknown function compare
PP_3505 -0.8 -1.4 conserved protein of unknown function compare
PP_5230 -0.8 -2.0 Tyrosine recombinase XerC compare
PP_2695 -0.8 -2.2 Transcriptional regulator, LysR family compare
PP_0887 -0.8 -3.8 Sensor histidine kinase compare
PP_2306 -0.8 -1.5 conserved exported protein of unknown function compare
PP_0949 -0.8 -3.1 putative ATP-binding protein UPF0042 compare
PP_1702 -0.8 -2.4 Recombination-associated protein RdgC compare
PP_2622 -0.8 -2.4 conserved protein of unknown function compare
PP_0593 -0.8 -1.0 putative ribosome-binding factor compare
PP_3098 -0.8 -1.0 conserved protein of unknown function compare
PP_1672 -0.8 -2.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4699 -0.8 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1678 -0.8 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3506 -0.7 -2.5 Magnesium chelatase, subunit ChII compare
PP_3407 -0.7 -2.2 conserved protein of unknown function compare
PP_0063 -0.7 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0556 -0.7 -2.2 Acetoin catabolism protein compare
PP_1676 -0.7 -3.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3243 -0.7 -1.4 Acetyltransferase, GNAT family compare
PP_3821 -0.7 -4.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3522 -0.7 -1.6 conserved protein of unknown function compare
PP_2028 -0.7 -2.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3946 -0.7 -0.8 HTH-type transcriptional repressor NicR compare
PP_1994 -0.7 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_4695 -0.7 -3.9 Sensory box histidine kinase compare
PP_0090 -0.7 -2.5 conserved exported protein of unknown function compare
PP_3926 -0.7 -0.6 short-chain dehydrogenase compare
PP_5055 -0.7 -2.2 Sulfurtransferase compare
PP_4829 -0.7 -1.6 putative precorrin-3B synthase compare
PP_0120 -0.7 -3.8 putative zinc ABC transporter compare
PP_1128 -0.7 -1.5 OmpA family protein compare
PP_4797 -0.7 -1.3 conserved protein of unknown function compare
PP_2677 -0.7 -2.0 conserved exported protein of unknown function compare
PP_3043 -0.7 -1.1 conserved protein of unknown function compare
PP_4964 -0.7 -0.9 D-erythrose 4-phosphate dehydrogenase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas putida KT2440

For nitrogen source Putrescine Dihydrochloride across organisms