Experiment set29IT005 for Pseudomonas putida KT2440

Compare to:

Propandiamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1650 -8.2 -16.6 Sensor protein GacS compare
PP_4723 -8.1 -15.5 Carbamoyl-phosphate synthase large chain compare
PP_4099 -7.6 -23.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4890 -7.2 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0691 -7.2 -5.0 Glutamate 5-kinase compare
PP_4724 -7.2 -11.0 Carbamoyl-phosphate synthase small chain compare
PP_0596 -6.3 -6.2 Omega-amino acid--pyruvate aminotransferase compare
PP_0420 -6.3 -4.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0967 -6.3 -6.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3511 -6.3 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_2932 -6.1 -10.2 Amidase family protein compare
PP_1988 -6.1 -8.4 3-isopropylmalate dehydrogenase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_0787 -6.0 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5076 -6.0 -9.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -6.0 -4.1 glutamate synthase (NADPH) beta subunit compare
PP_4547 -5.9 -5.8 putative Glutamine synthetase compare
PP_0417 -5.9 -12.0 Anthranilate synthase component 1 compare
PP_4678 -5.9 -10.6 Ketol-acid reductoisomerase compare
PP_0213 -5.9 -4.1 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0293 -5.8 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5185 -5.7 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -5.7 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1426 -5.7 -12.7 L-aspartate oxidase compare
PP_2001 -5.7 -12.7 O-succinylhomoserine sulfhydrylase compare
PP_5015 -5.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5104 -5.6 -6.7 thiazole synthase compare
PP_4922 -5.6 -10.1 Phosphomethylpyrimidine synthase compare
PP_5097 -5.6 -8.6 homoserine O-acetyltransferase compare
PP_0567 -5.6 -10.8 Biosynthetic arginine decarboxylase compare
PP_1231 -5.5 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0246 -5.5 -3.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_1995 -5.5 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -5.5 -9.2 Argininosuccinate synthase compare
PP_4548 -5.5 -11.1 putative Oxidoreductase compare
PP_0290 -5.4 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -5.4 -10.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3244 -5.4 -5.3 Magnesium transporter, MgtC family compare
PP_4679 -5.4 -5.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.3 -9.6 Histidinol dehydrogenase compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_0266 -5.3 -10.7 Agmatine deiminase compare
PP_4909 -5.1 -7.0 phosphoserine phosphatase compare
PP_0595 -5.1 -11.3 Transcriptional regulator, LysR family compare
PP_1079 -5.1 -3.5 Ornithine carbamoyltransferase compare
PP_5096 -5.0 -6.0 putative factor involved in shape determination compare
PP_5098 -5.0 -9.0 methionine biosynthesis protein MetW compare
PP_0184 -4.9 -4.8 Argininosuccinate lyase compare
PP_0597 -4.8 -14.3 methylmalonate-semialdehyde dehydrogenase compare
PP_1233 -4.8 -3.3 sulfurtransferase compare
PP_4700 -4.8 -3.3 pantothenate synthetase compare
PP_5348 -4.8 -10.2 Transcriptional regulator, LysR family compare
PP_0289 -4.8 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0421 -4.7 -8.4 Anthranilate phosphoribosyltransferase compare
PP_0291 -4.7 -4.6 conserved protein of unknown function compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0362 -4.7 -15.2 Biotin synthase compare
PP_1348 -4.6 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4984 -4.6 -11.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5331 -4.6 -4.7 Long-chain acyl-CoA thioester hydrolase compare
PP_5347 -4.6 -10.2 pyruvate carboxylase subunit A compare
PP_0888 -4.6 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_5146 -4.5 -8.2 RNA pyrophosphohydrolase compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4782 -4.5 -4.4 Phosphomethylpyrimidine kinase compare
PP_2908 -4.4 -3.0 DNA-binding transcriptional repressor compare
PP_5128 -4.3 -7.7 Dihydroxy-acid dehydratase compare
PP_1842 -4.2 -6.4 Glutamine amidotransferase, class I compare
PP_0363 -4.2 -14.0 8-amino-7-oxononanoate synthase compare
PP_5184 -4.2 -7.6 glutamylpolyamine synthetase compare
PP_5346 -4.2 -10.7 pyruvate carboxylase subunit B compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_1986 -4.1 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_5303 -4.1 -4.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5048 -4.1 -8.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5278 -3.9 -4.7 4-guanidinobutyraldehyde dehydrogenase compare
PP_0340 -3.9 -13.5 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0339 -3.8 -5.9 Pyruvate dehydrogenase E1 component compare
PP_1025 -3.8 -12.2 2-isopropylmalate synthase compare
PP_5095 -3.8 -3.6 pyrroline-5-carboxylate reductase compare
PP_0083 -3.8 -3.7 tryptophan synthase beta chain compare
PP_5262 -3.8 -14.1 Probable multidrug resistance protein NorM compare
PP_0366 -3.8 -7.6 dethiobiotin synthetase compare
PP_0364 -3.8 -10.9 pimeloyl-[acp] methyl ester esterase compare
PP_2328 -3.7 -2.6 Phosphoadenosine phosphosulfate reductase compare
PP_2327 -3.7 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -3.6 -4.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3245 -3.6 -1.9 conserved protein of unknown function compare
PP_5055 -3.5 -5.4 Sulfurtransferase compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_3999 -3.4 -4.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1012 -3.4 -7.1 DNA-binding response regulator compare
PP_4799 -3.4 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1912 -3.3 -6.3 Phosphate acyltransferase compare
PP_0214 -3.3 -7.5 4-aminobutyrate aminotransferase compare
PP_2402 -3.2 -2.2 putative Sensor histidine kinase compare
PP_3243 -3.1 -4.1 Acetyltransferase, GNAT family compare
PP_4789 -3.1 -5.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1011 -3.1 -12.3 glucokinase compare
PP_4696 -3.1 -4.7 Nitrogen regulation protein NR(I) compare
PP_1128 -3.0 -2.9 OmpA family protein compare
PP_1758 -3.0 -8.5 putative sulfurtransferase containing rhodanese-like domain compare
PP_4271 -2.9 -1.1 conserved protein of unknown function compare
PP_2168 -2.9 -10.3 Transaldolase compare
PP_0365 -2.9 -7.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1655 -2.9 -8.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1022 -2.9 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4699 -2.8 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0834 -2.8 -1.6 Sec translocation complex subunit YajC compare
PP_0566 -2.8 -1.6 translation-related factor compare
PP_1017 -2.8 -6.6 mannose/glucose ABC transporter, permease protein compare
PP_2370 -2.7 -2.0 conserved protein of unknown function compare
PP_1016 -2.6 -8.2 mannose/glucose ABC transporter, permease protein compare
PP_4902 -2.6 -1.8 Oligoribonuclease compare
PP_1018 -2.5 -6.5 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5212 -2.5 -6.6 Oxidoreductase, iron-sulfur-binding compare
PP_2181 -2.5 -5.3 Transcriptional regulator, Cro/CI family compare
PP_4009 -2.4 -2.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_0711 -2.4 -2.8 putative hydrolase compare
PP_0872 -2.4 -9.5 Peptide chain release factor 3 compare
PP_3417 -2.4 -6.1 D-gluconate transporter compare
PP_3409 -2.4 -3.5 putative Cobalamin biosynthesis protein cobE compare
PP_0697 -2.3 -8.2 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1015 -2.3 -9.4 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5322 -2.3 -6.6 putative metal ion transporter compare
PP_0846 -2.3 -2.8 DnaK-like molecular chaperone specific for IscU compare
PP_4828 -2.3 -1.3 Precorrin-8X methylmutase compare
PP_4891 -2.3 -4.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4874 -2.3 -1.5 50S ribosomal protein L9 compare
PP_0593 -2.2 -1.5 putative ribosome-binding factor compare
PP_0401 -2.2 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1589 -2.2 -8.8 uridylyltransferase compare
PP_0247 -2.2 -8.1 Osmolarity sensor protein EnvZ compare
PP_4787 -2.1 -2.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0735 -2.1 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4342 -2.1 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_4803 -2.1 -7.1 D-alanyl-D-alanine carboxypeptidase compare
PP_3731 -2.1 -5.8 Transcriptional regulator, TetR family compare
PP_2378 -2.0 -2.7 Fe/S biogenesis protein NfuA compare
PP_5508 -2.0 -1.4 conserved protein of unknown function compare
PP_3505 -2.0 -2.9 conserved protein of unknown function compare
PP_5719 -2.0 -5.2 choline-responsive transcriptional repressor BetI compare
PP_3506 -2.0 -4.3 Magnesium chelatase, subunit ChII compare
PP_2280 -1.9 -2.4 conserved protein of unknown function compare
PP_1111 -1.9 -5.6 putative Synthetase compare
PP_4830 -1.9 -4.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_3598 -1.8 -9.0 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) compare
PP_2499 -1.8 -1.3 conserved protein of unknown function compare
PP_5350 -1.8 -4.1 Transcriptional regulator, RpiR family compare
PP_4107 -1.8 -3.6 Transcriptional regulator, LysR family compare
PP_1664 -1.8 -3.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1013 -1.8 -5.2 Sensor histidine kinase compare
PP_5145 -1.7 -13.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5047 -1.7 -3.7 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2929 -1.7 -7.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5114 -1.7 -1.2 putative adenine methyltransferase compare
PP_3590 -1.7 -5.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5486 -1.7 -1.2 conserved protein of unknown function compare
PP_5271 -1.7 -4.0 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_4684 -1.7 -5.8 conserved protein of unknown function with kinase-like domain compare
PP_1346 -1.7 -5.2 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_5035 -1.7 -4.7 Histidine utilization repressor compare
PP_3286 -1.7 -4.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5160 -1.7 -4.9 conserved exported protein of unknown function compare
PP_5393 -1.6 -1.2 putative metal-binding chaperone compare
PP_0066 -1.6 -5.3 Ribosomal RNA small subunit methyltransferase B compare
PP_4993 -1.6 -3.1 Glutathione synthetase compare
PP_3048 -1.6 -2.6 conserved protein of unknown function compare
PP_4004 -1.6 -1.9 DNA translocase FtsK compare
PP_1635 -1.6 -2.8 DNA-binding response regulator compare
PP_4171 -1.6 -9.3 conserved exported protein of unknown function compare
PP_4910 -1.6 -1.1 conserved protein of unknown function compare
PP_0117 -1.6 -4.7 Zn(2+) ABC transporter - permease subunit compare
PP_0120 -1.5 -4.7 putative zinc ABC transporter compare
PP_1110 -1.5 -3.6 serine acetyltransferase compare
PP_2615 -1.5 -1.9 hemolysin-coregulated protein compare
PP_4532 -1.5 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2145 -1.5 -6.3 beta-N-acetylglucosaminidase compare
PP_5227 -1.5 -6.2 diaminopimelate decarboxylase compare
PP_0630 -1.5 -0.8 DNA gyrase inhibitor YacG compare
PP_3990 -1.5 -6.9 substrate or modulator of FtsH-mediated proteolysis compare
PP_5090 -1.5 -2.4 putative cell division protein compare
PP_1628 -1.4 -4.8 NMN amidohydrolase compare
PP_2000 -1.4 -1.0 amidophosphoribosyl transferase compare
PP_4947 -1.4 -9.4 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5000 -1.4 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_0833 -1.4 -2.5 queuine tRNA-ribosyltransferase compare
PP_1654 -1.3 -2.6 cysteine synthase B compare
PP_0949 -1.3 -4.2 putative ATP-binding protein UPF0042 compare
PP_4774 -1.3 -5.1 divalent cation efflux transporter compare
PP_4477 -1.3 -5.1 N-succinylarginine dihydrolase compare
PP_1641 -1.3 -6.6 tRNA 2-thiocytidine biosynthesis protein TtcA compare
PP_4964 -1.3 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_1366 -1.3 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_4997 -1.3 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0406 -1.3 -4.3 Nucleotidyltransferase family protein compare
PP_4832 -1.3 -4.2 Precorrin-6x reductase compare
PP_1224 -1.3 -4.0 periplasmic subunit of the TolQRA transport system compare


Specific Phenotypes

For 43 genes in this experiment

For nitrogen source Propandiamine in Pseudomonas putida KT2440

For nitrogen source Propandiamine across organisms