Experiment set29IT004 for Pseudomonas putida KT2440

Compare to:

Propandiamine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1650 -6.4 -16.0 Sensor protein GacS compare
PP_4099 -6.2 -20.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0422 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
PP_5331 -6.1 -4.2 Long-chain acyl-CoA thioester hydrolase compare
PP_3244 -6.1 -4.1 Magnesium transporter, MgtC family compare
PP_4723 -6.0 -19.0 Carbamoyl-phosphate synthase large chain compare
PP_2001 -5.9 -9.9 O-succinylhomoserine sulfhydrylase compare
PP_4789 -5.9 -4.1 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0787 -5.9 -4.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0691 -5.8 -6.1 Glutamate 5-kinase compare
PP_0967 -5.8 -7.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.8 -7.9 3-isopropylmalate dehydrogenase compare
PP_0834 -5.8 -2.8 Sec translocation complex subunit YajC compare
PP_1426 -5.8 -11.1 L-aspartate oxidase compare
PP_0293 -5.8 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0596 -5.8 -9.6 Omega-amino acid--pyruvate aminotransferase compare
PP_4548 -5.7 -10.3 putative Oxidoreductase compare
PP_0420 -5.6 -8.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -5.6 -6.7 Branched-chain-amino-acid aminotransferase compare
PP_5185 -5.6 -5.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0966 -5.6 -8.5 Histidinol dehydrogenase compare
PP_4724 -5.5 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_5075 -5.5 -9.2 glutamate synthase (NADPH) beta subunit compare
PP_2181 -5.5 -5.1 Transcriptional regulator, Cro/CI family compare
PP_2932 -5.5 -10.5 Amidase family protein compare
PP_1231 -5.4 -5.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5346 -5.3 -8.9 pyruvate carboxylase subunit B compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_4680 -5.3 -10.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0567 -5.3 -11.4 Biosynthetic arginine decarboxylase compare
PP_4547 -5.3 -7.3 putative Glutamine synthetase compare
PP_4678 -5.3 -12.8 Ketol-acid reductoisomerase compare
PP_4922 -5.3 -11.8 Phosphomethylpyrimidine synthase compare
PP_5104 -5.3 -8.1 thiazole synthase compare
PP_0292 -5.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0597 -5.3 -13.2 methylmalonate-semialdehyde dehydrogenase compare
PP_5015 -5.2 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -5.2 -7.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5348 -5.1 -9.3 Transcriptional regulator, LysR family compare
PP_1985 -5.1 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_0595 -5.1 -11.9 Transcriptional regulator, LysR family compare
PP_5097 -5.1 -12.4 homoserine O-acetyltransferase compare
PP_0417 -5.1 -17.5 Anthranilate synthase component 1 compare
PP_5076 -5.1 -19.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_5098 -5.1 -9.7 methionine biosynthesis protein MetW compare
PP_0965 -5.1 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0266 -5.1 -11.8 Agmatine deiminase compare
PP_5262 -5.0 -12.5 Probable multidrug resistance protein NorM compare
PP_1842 -5.0 -3.4 Glutamine amidotransferase, class I compare
PP_1655 -5.0 -10.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0213 -5.0 -7.6 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_5212 -4.9 -9.4 Oxidoreductase, iron-sulfur-binding compare
PP_1088 -4.9 -11.1 Argininosuccinate synthase compare
PP_0366 -4.9 -7.0 dethiobiotin synthetase compare
PP_1079 -4.9 -3.4 Ornithine carbamoyltransferase compare
PP_2370 -4.9 -3.8 conserved protein of unknown function compare
PP_4984 -4.9 -12.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4909 -4.8 -7.3 phosphoserine phosphatase compare
PP_5184 -4.7 -6.1 glutamylpolyamine synthetase compare
PP_4679 -4.7 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0566 -4.6 -1.3 translation-related factor compare
PP_5128 -4.6 -9.0 Dihydroxy-acid dehydratase compare
PP_5303 -4.6 -3.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5719 -4.6 -6.3 choline-responsive transcriptional repressor BetI compare
PP_0184 -4.6 -5.5 Argininosuccinate lyase compare
PP_5146 -4.6 -9.8 RNA pyrophosphohydrolase compare
PP_1233 -4.6 -3.2 sulfurtransferase compare
PP_1995 -4.6 -7.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4782 -4.6 -4.4 Phosphomethylpyrimidine kinase compare
PP_4890 -4.5 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1015 -4.5 -9.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_3398 -4.5 -2.2 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1912 -4.5 -4.4 Phosphate acyltransferase compare
PP_0365 -4.5 -11.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0362 -4.5 -13.9 Biotin synthase compare
PP_5347 -4.5 -10.4 pyruvate carboxylase subunit A compare
PP_5048 -4.4 -8.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0888 -4.4 -3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1012 -4.4 -6.7 DNA-binding response regulator compare
PP_1986 -4.4 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_1348 -4.4 -8.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0711 -4.4 -3.7 putative hydrolase compare
PP_1410 -4.3 -1.2 conserved protein of unknown function compare
PP_0363 -4.3 -14.1 8-amino-7-oxononanoate synthase compare
PP_0364 -4.3 -10.0 pimeloyl-[acp] methyl ester esterase compare
PP_5155 -4.2 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0377 -4.2 -1.7 coenzyme PQQ synthesis protein D compare
PP_5096 -4.2 -7.7 putative factor involved in shape determination compare
PP_1562 -4.1 -1.6 putative Phage terminase, small subunit compare
PP_2327 -4.1 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0339 -4.0 -4.8 Pyruvate dehydrogenase E1 component compare
PP_0082 -4.0 -3.9 tryptophan synthase alpha chain compare
PP_0421 -4.0 -8.5 Anthranilate phosphoribosyltransferase compare
PP_2433 -4.0 -2.7 conserved protein of unknown function compare
PP_2908 -4.0 -2.7 DNA-binding transcriptional repressor compare
PP_1017 -3.9 -8.0 mannose/glucose ABC transporter, permease protein compare
PP_2371 -3.9 -3.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5095 -3.9 -2.8 pyrroline-5-carboxylate reductase compare
PP_4699 -3.9 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1011 -3.8 -11.7 glucokinase compare
PP_3392 -3.8 -1.5 conserved protein of unknown function compare
PP_1016 -3.7 -10.6 mannose/glucose ABC transporter, permease protein compare
PP_0083 -3.7 -3.6 tryptophan synthase beta chain compare
PP_4981 -3.7 -2.4 polyisoprene-binding protein, acidic stress response factor compare
PP_1025 -3.7 -11.5 2-isopropylmalate synthase compare
PP_0214 -3.7 -7.1 4-aminobutyrate aminotransferase compare
PP_4700 -3.7 -5.0 pantothenate synthetase compare
PP_0697 -3.6 -7.5 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_5055 -3.6 -4.5 Sulfurtransferase compare
PP_1013 -3.6 -7.6 Sensor histidine kinase compare
PP_4797 -3.5 -1.3 conserved protein of unknown function compare
PP_2136 -3.5 -3.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0340 -3.5 -12.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5278 -3.5 -5.8 4-guanidinobutyraldehyde dehydrogenase compare
PP_0289 -3.5 -5.5 Imidazoleglycerol-phosphate dehydratase compare
PP_5014 -3.5 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1635 -3.5 -3.2 DNA-binding response regulator compare
PP_1142 -3.4 -1.0 conserved protein of unknown function compare
PP_0872 -3.4 -8.9 Peptide chain release factor 3 compare
PP_3245 -3.4 -1.3 conserved protein of unknown function compare
PP_1454 -3.4 -2.9 conserved protein of unknown function compare
PP_5748 -3.3 -1.2 cytochrome c heme lyase subunit compare
PP_2568 -3.3 -1.3 Ring-cleaving dioxygenase compare
PP_5035 -3.3 -6.7 Histidine utilization repressor compare
PP_5000 -3.3 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_4891 -3.2 -2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4799 -3.2 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0735 -3.2 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_3693 -3.2 -4.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_3999 -3.2 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2328 -3.2 -3.1 Phosphoadenosine phosphosulfate reductase compare
PP_1309 -3.2 -5.0 conserved exported protein of unknown function compare
PP_4999 -3.2 -2.4 dihydroorotase-like protein compare
PP_1826 -3.0 -2.6 Hydrolase, isochorismatase family compare
PP_5652 -3.0 -2.2 conserved protein of unknown function, phage origin compare
PP_3043 -3.0 -1.8 conserved protein of unknown function compare
PP_1022 -2.9 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_1679 -2.9 -3.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1758 -2.9 -6.7 putative sulfurtransferase containing rhodanese-like domain compare
PP_5393 -2.9 -1.1 putative metal-binding chaperone compare
PP_1440 -2.8 -5.3 tRNA (mo5U34)-methyltransferase compare
PP_4532 -2.8 -3.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1018 -2.8 -4.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5145 -2.8 -16.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4271 -2.8 -0.8 conserved protein of unknown function compare
PP_0007 -2.7 -1.8 conserved hypothetical protein compare
PP_3417 -2.7 -4.2 D-gluconate transporter compare
PP_0236 -2.7 -2.0 NAD(P)H-dependent FMN reductase subunit compare
PP_4895 -2.7 -1.8 tRNA dimethylallyltransferase compare
PP_2499 -2.7 -1.0 conserved protein of unknown function compare
PP_5110 -2.7 -1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1917 -2.6 -8.1 4-amino-4-deoxychorismate lyase compare
PP_0246 -2.6 -1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_4837 -2.6 -3.2 conserved protein of unknown function compare
PP_4902 -2.6 -1.7 Oligoribonuclease compare
PP_4696 -2.5 -4.8 Nitrogen regulation protein NR(I) compare
PP_2402 -2.5 -2.4 putative Sensor histidine kinase compare
PP_4684 -2.5 -7.4 conserved protein of unknown function with kinase-like domain compare
PP_2168 -2.4 -8.1 Transaldolase compare
PP_2426 -2.4 -3.6 coniferyl alcohol dehydrogenase compare
PP_4355 -2.4 -2.8 flagellar export apparatus subunit compare
PP_5483 -2.4 -1.3 conserved protein of unknown function compare
PP_4892 -2.4 -6.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0247 -2.4 -7.9 Osmolarity sensor protein EnvZ compare
PP_1623 -2.4 -6.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_5505 -2.4 -2.3 conserved transmembrane protein of unknown function compare
PP_0120 -2.4 -8.6 putative zinc ABC transporter compare
PP_3052 -2.4 -0.9 conserved protein of unknown function compare
PP_0306 -2.3 -2.4 conserved protein of unknown function compare
PP_4136 -2.3 -0.8 Transcriptional regulator, LuxR family compare
PP_4830 -2.3 -4.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_2302 -2.3 -1.6 DNA-binding, ATP-dependent protease compare
PP_5271 -2.3 -5.7 DNA-binding transcriptional dual regulator, leucine-binding compare
PP_3449 -2.3 -1.8 conserved exported protein of unknown function compare
PP_0848 -2.3 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2899 -2.2 -1.2 conserved exported protein of unknown function compare
PP_3505 -2.2 -2.2 conserved protein of unknown function compare
PP_1096 -2.2 -1.8 putative electron transport complex protein compare
PP_4874 -2.2 -1.2 50S ribosomal protein L9 compare
PP_4947 -2.2 -10.2 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_1124 -2.2 -2.8 conserved membrane protein of unknown function compare
PP_0435 -2.2 -13.3 Peptidase, M23/M37 family compare
PP_4487 -2.2 -12.7 acetyl-CoA synthetase compare
PP_4803 -2.2 -7.1 D-alanyl-D-alanine carboxypeptidase compare
PP_2929 -2.2 -7.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5202 -2.2 -1.4 putative cell division protein compare
PP_5160 -2.2 -4.7 conserved exported protein of unknown function compare
PP_5227 -2.2 -8.3 diaminopimelate decarboxylase compare
PP_3590 -2.1 -6.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0117 -2.1 -6.5 Zn(2+) ABC transporter - permease subunit compare
PP_4829 -2.1 -3.6 putative precorrin-3B synthase compare
PP_4720 -2.1 -1.2 putative RNA binding protein compare
PP_0066 -2.1 -5.0 Ribosomal RNA small subunit methyltransferase B compare
PP_3506 -2.1 -3.0 Magnesium chelatase, subunit ChII compare
PP_5322 -2.1 -6.7 putative metal ion transporter compare
PP_4993 -2.1 -3.4 Glutathione synthetase compare
PP_2227 -2.0 -3.8 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_3507 -2.0 -7.9 Aerobic cobaltochelatase subunit CobN compare
PP_5701 -2.0 -1.3 conserved protein of unknown function compare
PP_4107 -2.0 -4.3 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 56 genes in this experiment

For nitrogen source Propandiamine in Pseudomonas putida KT2440

For nitrogen source Propandiamine across organisms