Experiment set28S9 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_11825 -6.5 -2.8 transcriptional regulator compare
PS417_14065 -5.8 -11.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_17290 -4.0 -11.4 RND transporter compare
PS417_23375 -3.8 -2.0 cytochrome C oxidase compare
PS417_21480 -3.8 -1.4 23S rRNA pseudouridylate synthase compare
PS417_27300 -3.7 -0.8 cell division protein ZapA compare
PS417_00650 -3.4 -1.0 LysR family transcriptional regulator compare
PS417_23380 -3.2 -3.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_05975 -3.0 -0.6 chemotaxis protein CheW compare
PS417_21515 -3.0 -11.3 transcriptional regulator compare
PS417_16490 -3.0 -0.9 cell division protein FtsK compare
PS417_23915 -2.9 -4.5 pantoate--beta-alanine ligase compare
PS417_13800 -2.9 -3.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02225 -2.7 -1.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23385 -2.7 -12.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_02975 -2.6 -4.0 3-dehydroquinate dehydratase compare
PS417_17300 -2.6 -4.7 RND transporter compare
PS417_00705 -2.6 -2.0 MarR family transcriptional regulator compare
PS417_19350 -2.6 -5.8 GTP cyclohydrolase compare
PS417_17295 -2.6 -5.1 RND transporter MFP subunit compare
PS417_22565 -2.5 -0.5 formyltetrahydrofolate deformylase compare
PS417_02560 -2.5 -1.8 23S rRNA methyltransferase compare
PS417_16005 -2.5 -3.8 ATPase compare
PS417_27135 -2.3 -0.7 glutamine synthetase compare
PS417_27040 -2.3 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_22520 -2.3 -0.9 histidine kinase compare
PS417_04690 -2.3 -3.7 transcriptional regulator compare
PS417_24500 -2.3 -4.1 DEAD/DEAH box helicase compare
PS417_22850 -2.2 -13.0 virulence factor family protein compare
PS417_27870 -2.1 -2.2 ATP-dependent DNA helicase RecG compare
PS417_23390 -2.1 -5.5 ubiquinol oxidase subunit II compare
PS417_22845 -2.1 -13.2 membrane protein compare
PS417_01580 -2.1 -1.5 imidazole glycerol phosphate synthase compare
PS417_04960 -2.0 -2.0 hypothetical protein compare
PS417_13795 -2.0 -6.0 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07140 -2.0 -1.0 peptidase M48 compare
PS417_23490 -1.9 -1.2 dihydrofolate reductase compare
PS417_04275 -1.9 -12.0 hypothetical protein compare
PS417_17215 -1.9 -2.0 peptidylprolyl isomerase compare
PS417_23370 -1.8 -5.2 protoheme IX farnesyltransferase compare
PS417_04585 -1.8 -0.7 hypothetical protein compare
PS417_22795 -1.8 -1.0 exclusion suppressor FxsA compare
PS417_20130 -1.8 -10.6 dehydrogenase compare
PS417_03560 -1.8 -0.8 GTP-binding protein compare
PS417_00085 -1.8 -2.2 16S rRNA methyltransferase compare
PS417_23805 -1.8 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_20115 -1.7 -3.0 hypothetical protein compare
PS417_13820 -1.7 -7.6 UDP-glucose 6-dehydrogenase compare
PS417_06150 -1.7 -1.8 SAM-dependent methlyltransferase compare
PS417_22445 -1.7 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_15250 -1.7 -2.4 DNA repair protein compare
PS417_04220 -1.6 -1.2 4-carboxymuconolactone decarboxylase compare
PS417_27585 -1.6 -1.7 diaminopimelate epimerase compare
PS417_06245 -1.6 -1.2 zinc metallopeptidase RseP compare
PS417_23810 -1.6 -9.2 acetolactate synthase 3 catalytic subunit compare
PS417_06680 -1.6 -3.5 nuclease PIN compare
PS417_23825 -1.6 -4.3 penicillin-binding protein compare
PS417_04365 -1.6 -0.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_01560 -1.6 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_01565 -1.5 -2.8 imidazole glycerol phosphate synthase compare
PS417_04595 -1.5 -1.2 cell division protein MraZ compare
PS417_09325 -1.5 -2.4 peptidase S41 compare
PS417_20775 -1.5 -1.5 coproporphyrinogen III oxidase compare
PS417_08200 -1.5 -2.5 hypothetical protein compare
PS417_03005 -1.5 -6.8 arginine decarboxylase compare
PS417_27195 -1.5 -0.6 N-acetylglutamate synthase compare
PS417_05830 -1.5 -1.7 hypothetical protein compare
PS417_25650 -1.4 -1.6 anhydro-N-acetylmuramic acid kinase compare
PS417_20715 -1.4 -0.8 cytochrome Cbb3 compare
PS417_05985 -1.4 -2.0 chemotaxis protein CheY compare
PS417_23025 -1.4 -4.5 murein transglycosylase compare
PS417_01920 -1.4 -0.4 ATP-dependent protease subunit HslV compare
PS417_07620 -1.4 -0.7 beta-hexosaminidase compare
PS417_04650 -1.4 -0.4 D-alanine--D-alanine ligase compare
PS417_25790 -1.4 -2.0 aminoglycoside phosphotransferase compare
PS417_08190 -1.4 -7.9 membrane protein compare
PS417_26730 -1.4 -0.4 pyrroline-5-carboxylate reductase compare
PS417_19065 -1.4 -1.1 monooxygenase compare
PS417_03300 -1.4 -2.1 alanine acetyltransferase compare
PS417_13790 -1.3 -3.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_22570 -1.3 -0.5 H-NS histone compare
PS417_22840 -1.3 -1.3 tRNA-Met compare
PS417_27245 -1.3 -2.1 aminotransferase DegT compare
PS417_23500 -1.3 -4.3 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_19650 -1.3 -2.8 chemotaxis protein CheW compare
PS417_21000 -1.3 -0.8 CrfX protein compare
PS417_00370 -1.3 -0.8 hypothetical protein compare
PS417_21630 -1.3 -1.7 magnesium transporter compare
PS417_26990 -1.3 -0.4 RNA pyrophosphohydrolase compare
PS417_01855 -1.3 -1.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_08185 -1.3 -3.3 glycosyl transferase compare
PS417_01630 -1.3 -1.3 hypothetical protein compare
PS417_10720 -1.3 -2.7 chemotaxis protein CheY compare
PS417_12805 -1.3 -5.8 glycogen branching protein compare
PS417_28325 -1.3 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_25380 -1.3 -2.6 hypothetical protein compare
PS417_08220 -1.2 -0.7 epimerase compare
PS417_08530 -1.2 -3.7 spermidine synthase compare
PS417_07700 -1.2 -1.6 chromosome partitioning protein ParA compare
PS417_07305 -1.2 -1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_01575 -1.2 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25315 -1.2 -2.3 membrane protein compare
PS417_02360 -1.2 -1.9 nitrate reductase compare
PS417_00925 -1.2 -1.1 hypothetical protein compare
PS417_13510 -1.2 -0.9 polyketide cyclase compare
PS417_10060 -1.1 -1.6 hypothetical protein compare
PS417_19675 -1.1 -2.2 chemotaxis protein CheY compare
PS417_01340 -1.1 -4.1 agmatine deiminase compare
PS417_24680 -1.1 -5.7 murein transglycosylase compare
PS417_01435 -1.1 -0.9 hypothetical protein compare
PS417_06835 -1.1 -1.3 phospholipase compare
PS417_02765 -1.1 -1.2 phosphate starvation-inducible protein PsiF compare
PS417_24230 -1.1 -3.7 ATP-dependent protease compare
PS417_10305 -1.1 -1.7 hypothetical protein compare
PS417_27155 -1.1 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08155 -1.1 -0.7 integration host factor subunit beta compare
PS417_07635 -1.1 -6.2 transcription-repair coupling factor compare
PS417_12855 -1.1 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08420 -1.1 -1.9 lipoprotein compare
PS417_06100 -1.1 -0.9 SAM-dependent methyltransferase compare
PS417_08740 -1.1 -0.9 ribose-phosphate pyrophosphokinase compare
PS417_05475 -1.1 -1.5 arginase compare
PS417_13805 -1.1 -4.6 4-amino-4-deoxy-L-arabinose transferase compare
PS417_15780 -1.0 -1.8 membrane protein compare
PS417_10405 -1.0 -0.8 filamentous hemagglutinin compare
PS417_28510 -1.0 -3.5 chromosome partitioning protein compare
PS417_01965 -1.0 -1.1 fimbriae biosynthesis protein compare
PS417_06635 -1.0 -0.9 ferredoxin compare
PS417_27315 -1.0 -0.7 hypothetical protein compare
PS417_04420 -1.0 -5.1 histidinol dehydrogenase compare
PS417_12635 -1.0 -2.0 alkanesulfonate monooxygenase compare
PS417_24530 -1.0 -2.8 ABC transporter substrate-binding protein compare
PS417_12735 -1.0 -1.1 peroxidase compare
PS417_04435 -1.0 -5.8 uracil phosphoribosyltransferase compare
PS417_08245 -1.0 -0.8 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_11820 -1.0 -0.6 histidine kinase compare
PS417_20030 -1.0 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_17490 -1.0 -1.8 ABC transporter ATP-binding protein compare
PS417_06165 -0.9 -2.5 thiamine biosynthesis protein ThiF compare
PS417_02485 -0.9 -1.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05820 -0.9 -1.5 recombinase RecX compare
PS417_07575 -0.9 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_12005 -0.9 -1.5 hypothetical protein compare
PS417_09935 -0.9 -3.1 hypothetical protein compare
PS417_08365 -0.9 -0.7 hypothetical protein compare
PS417_04170 -0.9 -3.9 stringent starvation protein A compare
PS417_26530 -0.9 -0.8 hypothetical protein compare
PS417_21705 -0.9 -2.3 arginine N-succinyltransferase compare
PS417_00375 -0.9 -1.7 membrane protein compare
PS417_09730 -0.9 -1.4 adenylylsulfate kinase compare
PS417_08230 -0.9 -1.2 lipopolysaccharide biosynthesis protein RfbH compare
PS417_27515 -0.9 -1.6 heme biosynthesis protein HemY compare
PS417_08025 -0.9 -0.5 acetylornithine aminotransferase compare
PS417_03000 -0.9 -2.7 translation initiation factor Sui1 compare
PS417_26225 -0.9 -2.6 electron transfer flavoprotein subunit beta compare
PS417_17590 -0.9 -1.3 ABC transporter substrate-binding protein compare
PS417_09545 -0.9 -1.6 aldehyde-activating protein compare
PS417_05500 -0.9 -1.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_00160 -0.9 -1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_24705 -0.9 -0.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_09470 -0.9 -0.8 hypothetical protein compare
PS417_18485 -0.9 -3.8 membrane protein compare
PS417_08435 -0.9 -0.9 pilus assembly protein PilZ compare
PS417_17125 -0.9 -2.0 transcriptional regulator compare
PS417_20880 -0.9 -1.0 GntR family transcriptional regulator compare
PS417_12220 -0.9 -2.3 hydroxyacylglutathione hydrolase compare
PS417_05045 -0.9 -1.8 acetamidase compare
PS417_04290 -0.9 -2.5 hypothetical protein compare
PS417_19720 -0.8 -0.6 DNA-binding protein compare
PS417_16555 -0.8 -0.9 cupin compare
PS417_18780 -0.8 -0.9 flavin reductase compare
PS417_01715 -0.8 -0.8 hypothetical protein compare
PS417_18710 -0.8 -3.1 hypothetical protein compare
PS417_15115 -0.8 -2.6 exonuclease SbcD compare
PS417_22810 -0.8 -1.3 DNA base-flipping protein YbaZ compare
PS417_08685 -0.8 -0.5 flagellar hook-length control protein FliK compare
PS417_22815 -0.8 -2.2 permease compare
PS417_18540 -0.8 -1.7 colicin V production CvpA compare
PS417_18435 -0.8 -1.8 hypothetical protein compare
PS417_19425 -0.8 -0.7 allantoicase compare
PS417_04920 -0.8 -1.6 GntR family transcriptional regulator compare
PS417_24835 -0.8 -3.0 hypothetical protein compare
PS417_02870 -0.8 -2.1 TonB-dependent receptor compare
PS417_20705 -0.8 -1.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_27485 -0.8 -2.3 hypothetical protein compare
PS417_16875 -0.8 -2.5 signal peptidase compare
PS417_25705 -0.8 -1.7 lipoate--protein ligase compare
PS417_14980 -0.8 -0.7 universal stress protein UspA compare
PS417_21065 -0.8 -1.4 3-methylitaconate isomerase compare
PS417_10810 -0.8 -1.1 hypothetical protein compare
PS417_13885 -0.8 -1.5 chemotaxis protein CheY compare
PS417_15470 -0.8 -2.9 saccharopine dehydrogenase compare
PS417_01850 -0.8 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18235 -0.8 -1.4 nitrile hydratase compare
PS417_26155 -0.8 -0.8 hypothetical protein compare
PS417_14200 -0.8 -0.8 hypothetical protein compare
PS417_16810 -0.8 -1.7 acyl-CoA dehydrogenase compare
PS417_12135 -0.8 -1.7 peptidylprolyl isomerase compare
PS417_19975 -0.8 -1.2 hypothetical protein compare
PS417_18845 -0.8 -2.1 peptidase compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days across organisms