Experiment set28S9 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
Culturing: fluoroDangl_ML3b, pot, at 26 (C)
By: Marta Torres on 6-Nov-23

Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem #Specific
Acid resistance mechanisms 1
Arginine and Ornithine Degradation 1
Cobalt-zinc-cadmium resistance 1
Polyamine Metabolism 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
arginine dependent acid resistance 1 1 1
putrescine biosynthesis I 2 2 1
L-arginine degradation III (arginine decarboxylase/agmatinase pathway) 2 2 1
L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway) 3 3 1
putrescine biosynthesis II 3 3 1
superpathway of putrescine biosynthesis 4 4 1
spermidine biosynthesis III 4 1 1
superpathway of polyamine biosynthesis I 8 6 1
superpathway of polyamine biosynthesis II 8 6 1
superpathway of L-arginine, putrescine, and 4-aminobutanoate degradation 11 8 1
superpathway of L-arginine and L-ornithine degradation 13 10 1
superpathway of arginine and polyamine biosynthesis 17 15 1