Experiment set28IT045 for Pseudomonas putida KT2440

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L-Glutamic acid monopotassium salt monohydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.4 -7.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -5.1 -6.9 Glutamate 5-kinase compare
PP_1985 -4.9 -7.5 3-isopropylmalate dehydratase large subunit compare
PP_0292 -4.6 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4724 -4.5 -15.5 Carbamoyl-phosphate synthase small chain compare
PP_4679 -4.5 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -4.5 -11.6 phosphoserine phosphatase compare
PP_0082 -4.4 -6.0 tryptophan synthase alpha chain compare
PP_4723 -4.4 -19.4 Carbamoyl-phosphate synthase large chain compare
PP_4678 -4.3 -17.2 Ketol-acid reductoisomerase compare
PP_0184 -4.2 -8.5 Argininosuccinate lyase compare
PP_1995 -4.2 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0289 -4.1 -11.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -4.1 -14.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -4.1 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -4.0 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_0420 -4.0 -14.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -4.0 -11.3 3-isopropylmalate dehydrogenase compare
PP_1088 -3.8 -14.5 Argininosuccinate synthase compare
PP_4680 -3.8 -17.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4999 -3.7 -3.5 dihydroorotase-like protein compare
PP_1079 -3.6 -8.2 Ornithine carbamoyltransferase compare
PP_0966 -3.6 -14.8 Histidinol dehydrogenase compare
PP_5014 -3.6 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -3.6 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -3.6 -6.8 tryptophan synthase beta chain compare
PP_1986 -3.5 -5.8 3-isopropylmalate dehydratase small subunit compare
PP_5128 -3.4 -9.8 Dihydroxy-acid dehydratase compare
PP_0422 -3.3 -7.8 Indole-3-glycerol phosphate synthase compare
PP_5015 -3.3 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0417 -3.2 -16.3 Anthranilate synthase component 1 compare
PP_4890 -3.1 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -3.0 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0421 -2.7 -7.5 Anthranilate phosphoribosyltransferase compare
PP_2370 -2.7 -4.0 conserved protein of unknown function compare
PP_1111 -2.7 -6.7 putative Synthetase compare
PP_5155 -2.7 -5.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1109 -2.6 -15.4 Transcriptional regulator, GntR family compare
PP_5097 -2.6 -13.6 homoserine O-acetyltransferase compare
PP_1025 -2.5 -10.6 2-isopropylmalate synthase compare
PP_5289 -2.5 -4.5 Acetylglutamate kinase compare
PP_1066 -2.4 -5.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_5048 -2.4 -5.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2001 -2.4 -11.1 O-succinylhomoserine sulfhydrylase compare
PP_5098 -2.3 -8.7 methionine biosynthesis protein MetW compare
PP_1067 -2.3 -12.6 Sensor histidine kinase compare
PP_1110 -2.1 -3.7 serine acetyltransferase compare
PP_3999 -2.1 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -2.0 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0339 -2.0 -5.9 Pyruvate dehydrogenase E1 component compare
PP_0291 -1.9 -2.8 conserved protein of unknown function compare
PP_2371 -1.9 -6.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -1.9 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2328 -1.9 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_1664 -1.9 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1097 -1.9 -1.0 Methionine--tRNA ligase compare
PP_2390 -1.8 -8.1 Transcriptional regulator, LysR family compare
PP_2327 -1.8 -10.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0137 -1.8 -11.7 glutamate/aspartate-proton DAACS transporter compare
PP_4891 -1.8 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5095 -1.7 -2.2 pyrroline-5-carboxylate reductase compare
PP_5047 -1.7 -5.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1071 -1.7 -7.2 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_1912 -1.7 -6.1 Phosphate acyltransferase compare
PP_2000 -1.6 -1.5 amidophosphoribosyl transferase compare
PP_0787 -1.6 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0719 -1.5 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1994 -1.3 -2.4 tRNA pseudouridine (38-40)synthase compare
PP_5337 -1.3 -3.3 LysR family transcriptional regulator compare
PP_1237 -1.3 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2414 -1.3 -1.9 conserved exported protein of unknown function compare
PP_5000 -1.3 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_4058 -1.3 -8.5 1,4-alpha-glucan branching enzyme compare
PP_5303 -1.3 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2388 -1.2 -3.2 Transporter, LysE family compare
PP_4364 -1.2 -5.5 putative Anti-sigma F factor antagonist compare
PP_5227 -1.2 -6.5 diaminopimelate decarboxylase compare
PP_4892 -1.2 -4.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1589 -1.2 -7.3 uridylyltransferase compare
PP_4546 -1.1 -3.6 ATP-dependent helicase HrpA compare
PP_4722 -1.1 -3.7 Transcription elongation factor GreA compare
PP_3484 -1.0 -5.2 Response regulator receiver protein compare
PP_4895 -1.0 -2.5 tRNA dimethylallyltransferase compare
PP_4004 -1.0 -2.0 DNA translocase FtsK compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0949 -1.0 -3.8 putative ATP-binding protein UPF0042 compare
PP_0127 -1.0 -5.8 Thiol:disulfide interchange protein compare
PP_3590 -0.9 -5.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2337 -0.9 -2.2 aconitate isomerase compare
PP_2756 -0.9 -1.9 conserved protein of unknown function compare
PP_4199 -0.9 -1.1 putative Lipoprotein compare
PP_4917 -0.9 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5274 -0.9 -2.4 conserved protein of unknown function compare
PP_2088 -0.9 -3.0 RNA polymerase sigma factor SigX compare
PP_2336 -0.9 -3.0 aconitate hydratase 1 compare
PP_4937 -0.9 -1.3 toluene tolerance protein compare
PP_2433 -0.9 -2.2 conserved protein of unknown function compare
PP_0809 -0.9 -6.1 disulfide bond formation protein B compare
PP_2668 -0.9 -1.8 ABC efflux transporter, ATP-binding protein compare
PP_5350 -0.9 -3.2 Transcriptional regulator, RpiR family compare
PP_2030 -0.9 -3.5 conserved protein of unknown function compare
PP_1022 -0.8 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_1435 -0.8 -3.6 DNA repair protein RecO compare
PP_2307 -0.8 -2.5 conserved protein of unknown function compare
PP_5331 -0.8 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_5456 -0.8 -1.1 conserved protein of unknown function compare
PP_1216 -0.8 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5114 -0.8 -1.4 putative adenine methyltransferase compare
PP_1493 -0.8 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5475 -0.8 -1.1 conserved protein of unknown function compare
PP_3338 -0.8 -2.6 putative cytochrome bd-type quinol oxidase compare
PP_5322 -0.8 -4.7 putative metal ion transporter compare
PP_3821 -0.8 -5.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4782 -0.8 -2.3 Phosphomethylpyrimidine kinase compare
PP_4804 -0.8 -1.7 RlpA-like lipoprotein compare
PP_3519 -0.8 -1.1 putative Lipoprotein compare
PP_4964 -0.8 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0594 -0.7 -4.6 Transcriptional regulator, TetR family compare
PP_5582 -0.7 -1.6 conserved protein of unknown function compare
PP_3384 -0.7 -2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_0185 -0.7 -4.1 Positive alginate biosynthesis regulatory protein compare
PP_5329 -0.7 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1362 -0.7 -2.2 pyruvate kinase II compare
PP_0150 -0.7 -1.2 conserved exported protein of unknown function compare
PP_4942 -0.7 -2.1 conserved protein of unknown function compare
PP_0164 -0.7 -4.1 conserved protein of unknown function compare
PP_4848 -0.7 -2.6 Curved DNA-binding protein compare
PP_0948 -0.7 -1.3 Phosphocarrier protein HPr compare
PP_2402 -0.7 -1.3 putative Sensor histidine kinase compare
PP_3892 -0.7 -1.6 conserved protein of unknown function compare
PP_1872 -0.7 -4.8 glutamate-pyruvate aminotransferase compare
PP_0833 -0.7 -1.9 queuine tRNA-ribosyltransferase compare
PP_5580 -0.7 -1.9 protein of unknown function compare
PP_4482 -0.7 -3.0 Transcriptional regulator, AraC family compare
PP_0345 -0.7 -2.0 putative Heptose kinase WapP compare
PP_4700 -0.7 -2.4 pantothenate synthetase compare
PP_0959 -0.7 -1.5 phospholipid ABC transporter compare
PP_1804 -0.7 -4.6 Glycosyl transferase WbpL compare
PP_5176 -0.7 -2.2 conserved protein of unknown function compare
PP_4254 -0.7 -1.6 conserved protein of unknown function compare
PP_0063 -0.7 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5644 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_3102 -0.6 -2.4 conserved protein of unknown function compare
PP_2137 -0.6 -1.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_2153 -0.6 -2.4 conserved protein of unknown function compare
PP_2765 -0.6 -2.0 putative Sulfonate monooxygenase MsuD compare
PP_4289 -0.6 -4.3 conserved membrane protein of unknown function compare
PP_1864 -0.6 -1.5 conserved protein of unknown function compare
PP_4268 -0.6 -1.1 nucleoid-associated broad specificity regulator compare
PP_1214 -0.6 -1.1 putative transcriptional regulatory protein compare
PP_1217 -0.6 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4739 -0.6 -2.2 conserved protein of unknown function compare
PP_1629 -0.6 -1.4 Protein RecA compare
PP_2168 -0.6 -3.5 Transaldolase compare
PP_3318 -0.6 -1.7 conserved protein of unknown function compare
PP_4126 -0.6 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_0900 -0.6 -1.7 PAP2 family protein compare
PP_2029 -0.6 -1.3 von Willebrand factor type A domain protein compare
PP_3888 -0.6 -2.7 conserved protein of unknown function compare
PP_2951 -0.6 -2.5 Transcriptional regulator, TetR family compare
PP_0832 -0.6 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0834 -0.6 -1.0 Sec translocation complex subunit YajC compare
PP_1293 -0.6 -0.9 molybdopterin synthase small subunit compare
PP_5218 -0.6 -2.6 DedA family protein compare
PP_5055 -0.6 -1.7 Sulfurtransferase compare
PP_0513 -0.6 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2203 -0.6 -1.9 conserved protein of unknown function compare
PP_3875 -0.6 -2.8 conserved protein of unknown function compare
PP_1734 -0.6 -0.5 Probable septum site-determining protein MinC compare
PP_3407 -0.6 -2.0 conserved protein of unknown function compare
PP_5328 -0.6 -1.5 putative phosphate transport system permease protein compare
PP_1672 -0.6 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0846 -0.5 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_3693 -0.5 -1.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_2575 -0.5 -0.9 conserved exported protein of unknown function compare
PP_5104 -0.5 -3.4 thiazole synthase compare
PP_4944 -0.5 -1.5 Carbamoyltransferase compare
PP_5575 -0.5 -1.4 conserved protein of unknown function compare
PP_2389 -0.5 -2.3 conserved protein of unknown function compare
PP_1036 -0.5 -2.6 membrane-bound lytic murein transglycosylase F compare
PP_5628 -0.5 -1.4 conserved protein of unknown function compare
PP_2929 -0.5 -3.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2122 -0.5 -1.6 molybdenum cofactor biosynthesis protein B compare
PP_4691 -0.5 -1.9 sugar fermentation stimulation protein A compare
PP_0058 -0.5 -4.4 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_1185 -0.5 -3.2 Outer membrane protein H1 compare
PP_2214 -0.5 -1.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2499 -0.5 -0.8 conserved protein of unknown function compare
PP_4880 -0.5 -2.6 exoribonuclease R compare
PP_2650 -0.5 -1.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_1926 -0.5 -2.3 putative phosphotyrosine-protein phosphatase compare
PP_4379 -0.5 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2835 -0.5 -1.5 putative oxidoreductase compare
PP_4480 -0.5 -3.1 arginine N-succinyltransferase, subunit alpha compare
PP_1068 -0.5 -2.0 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2883 -0.5 -1.4 conserved protein of unknown function compare
PP_0122 -0.5 -1.2 conserved exported protein of unknown function compare
PP_0002 -0.5 -2.9 probable chromosome partition protein compare
PP_5505 -0.5 -1.1 conserved transmembrane protein of unknown function compare
PP_0003 -0.5 -1.7 16S RNA methyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Glutamic acid monopotassium salt monohydrate in Pseudomonas putida KT2440

For nitrogen source L-Glutamic acid monopotassium salt monohydrate across organisms