Experiment set28IT042 for Pseudomonas putida KT2440

Compare to:

L-pyroglutamic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -5.9 -10.8 Carbamoyl-phosphate synthase small chain compare
PP_4943 -5.0 -3.5 putative Glycosyl transferase compare
PP_4723 -5.0 -21.3 Carbamoyl-phosphate synthase large chain compare
PP_4364 -4.9 -8.2 putative Anti-sigma F factor antagonist compare
PP_1079 -4.9 -8.3 Ornithine carbamoyltransferase compare
PP_0422 -4.9 -9.9 Indole-3-glycerol phosphate synthase compare
PP_0082 -4.9 -4.7 tryptophan synthase alpha chain compare
PP_0184 -4.8 -8.0 Argininosuccinate lyase compare
PP_1988 -4.7 -10.1 3-isopropylmalate dehydrogenase compare
PP_0290 -4.7 -10.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5014 -4.7 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0967 -4.7 -14.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_4909 -4.5 -11.7 phosphoserine phosphatase compare
PP_0083 -4.5 -6.1 tryptophan synthase beta chain compare
PP_0966 -4.4 -13.5 Histidinol dehydrogenase compare
PP_1995 -4.4 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -4.3 -15.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0289 -4.3 -10.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -4.3 -20.2 Anthranilate synthase component 1 compare
PP_4678 -4.3 -17.9 Ketol-acid reductoisomerase compare
PP_1088 -4.2 -14.6 Argininosuccinate synthase compare
PP_5155 -4.2 -6.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5289 -4.1 -6.8 Acetylglutamate kinase compare
PP_0421 -4.1 -8.1 Anthranilate phosphoribosyltransferase compare
PP_0127 -4.1 -6.9 Thiol:disulfide interchange protein compare
PP_5346 -4.0 -11.5 pyruvate carboxylase subunit B compare
PP_3511 -4.0 -10.1 Branched-chain-amino-acid aminotransferase compare
PP_5347 -4.0 -14.9 pyruvate carboxylase subunit A compare
PP_5048 -3.9 -7.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4679 -3.8 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4575 -3.8 -6.1 Urea amidolyase-related protein compare
PP_4680 -3.8 -15.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4577 -3.8 -9.0 UPF0271 protein PP_4577 compare
PP_0691 -3.7 -7.0 Glutamate 5-kinase compare
PP_5128 -3.7 -8.2 Dihydroxy-acid dehydratase compare
PP_4576 -3.6 -10.7 allophanate hydrolase subunit compare
PP_4890 -3.6 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0164 -3.4 -12.1 conserved protein of unknown function compare
PP_1986 -3.4 -5.9 3-isopropylmalate dehydratase small subunit compare
PP_1985 -3.4 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_3821 -3.4 -13.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2371 -3.3 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5185 -3.3 -8.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5348 -3.3 -10.0 Transcriptional regulator, LysR family compare
PP_4579 -3.3 -9.2 Transcriptional regulator, LysR family compare
PP_0965 -3.2 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0292 -3.1 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -3.1 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4578 -3.0 -13.4 Major facilitator family transporter compare
PP_5097 -3.0 -15.1 homoserine O-acetyltransferase compare
PP_5095 -2.8 -2.7 pyrroline-5-carboxylate reductase compare
PP_5098 -2.7 -9.1 methionine biosynthesis protein MetW compare
PP_1025 -2.7 -9.3 2-isopropylmalate synthase compare
PP_4940 -2.6 -11.0 Putative glycosyltransferase compare
PP_0362 -2.6 -14.7 Biotin synthase compare
PP_2001 -2.5 -10.2 O-succinylhomoserine sulfhydrylase compare
PP_1109 -2.5 -13.4 Transcriptional regulator, GntR family compare
PP_5114 -2.5 -2.9 putative adenine methyltransferase compare
PP_0809 -2.5 -11.5 disulfide bond formation protein B compare
PP_1216 -2.4 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4892 -2.3 -4.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1231 -2.3 -7.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1111 -2.2 -5.6 putative Synthetase compare
PP_5047 -2.2 -6.3 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1215 -2.2 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_2088 -2.2 -5.4 RNA polymerase sigma factor SigX compare
PP_4799 -2.1 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1110 -2.1 -4.9 serine acetyltransferase compare
PP_2370 -2.1 -3.0 conserved protein of unknown function compare
PP_3484 -2.0 -4.0 Response regulator receiver protein compare
PP_3999 -2.0 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4058 -2.0 -10.9 1,4-alpha-glucan branching enzyme compare
PP_5015 -2.0 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4891 -2.0 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1994 -2.0 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_2327 -1.9 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0291 -1.9 -2.6 conserved protein of unknown function compare
PP_0339 -1.9 -6.1 Pyruvate dehydrogenase E1 component compare
PP_2328 -1.8 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_5571 -1.8 -2.2 conserved protein of unknown function compare
PP_3411 -1.7 -3.0 conserved protein of unknown function compare
PP_1589 -1.7 -8.9 uridylyltransferase compare
PP_1778 -1.7 -6.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -1.6 -7.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0401 -1.6 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_2388 -1.6 -5.9 Transporter, LysE family compare
PP_4696 -1.6 -5.2 Nitrogen regulation protein NR(I) compare
PP_1801 -1.5 -10.8 Glycosyl transferase WbpY compare
PP_1804 -1.5 -9.5 Glycosyl transferase WbpL compare
PP_2390 -1.5 -6.4 Transcriptional regulator, LysR family compare
PP_4936 -1.5 -7.1 O-antigen polymerase compare
PP_4938 -1.5 -6.7 putative Glycosyl transferase compare
PP_0787 -1.4 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2307 -1.4 -3.1 conserved protein of unknown function compare
PP_1802 -1.4 -11.6 glycosyl transferase compare
PP_1776 -1.3 -10.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1654 -1.3 -2.8 cysteine synthase B compare
PP_1805 -1.3 -10.8 Polysaccharide biosynthesis protein compare
PP_1800 -1.3 -9.0 Oxidoreductase Rmd compare
PP_1912 -1.3 -4.8 Phosphate acyltransferase compare
PP_1780 -1.3 -10.7 putative mannosyltransferase compare
PP_1799 -1.3 -9.8 GDP-mannose 4,6-dehydratase compare
PP_4700 -1.2 -3.2 pantothenate synthetase compare
PP_3098 -1.2 -1.6 conserved protein of unknown function compare
PP_4642 -1.2 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_0834 -1.2 -2.3 Sec translocation complex subunit YajC compare
PP_5303 -1.1 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5322 -1.1 -6.3 putative metal ion transporter compare
PP_4984 -1.1 -8.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0513 -1.1 -2.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4143 -1.0 -2.9 conserved protein of unknown function compare
PP_3519 -1.0 -1.4 putative Lipoprotein compare
PP_1493 -1.0 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0852 -1.0 -2.6 Transcriptional regulator, Cro/CI family compare
PP_0363 -1.0 -6.8 8-amino-7-oxononanoate synthase compare
PP_1664 -0.9 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4793 -0.9 -1.9 conserved protein of unknown function compare
PP_1468 -0.9 -1.6 Tyrosine recombinase XerD compare
PP_2581 -0.9 -1.6 conserved protein of unknown function compare
PP_0364 -0.9 -5.1 pimeloyl-[acp] methyl ester esterase compare
PP_3551 -0.9 -1.4 DNA-binding response regulator, LuxR family compare
PP_0801 -0.9 -1.1 conserved exported protein of unknown function compare
PP_t13 -0.9 -2.6 tRNA-Lys compare
PP_4695 -0.8 -6.1 Sensory box histidine kinase compare
PP_4004 -0.8 -1.8 DNA translocase FtsK compare
PP_5227 -0.8 -4.3 diaminopimelate decarboxylase compare
PP_4699 -0.8 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3946 -0.8 -0.9 HTH-type transcriptional repressor NicR compare
PP_4910 -0.8 -1.3 conserved protein of unknown function compare
PP_0366 -0.8 -2.8 dethiobiotin synthetase compare
PP_4379 -0.8 -3.7 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3409 -0.8 -2.1 putative Cobalamin biosynthesis protein cobE compare
PP_2668 -0.8 -2.2 ABC efflux transporter, ATP-binding protein compare
PP_1233 -0.8 -3.3 sulfurtransferase compare
PP_4789 -0.8 -4.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2847 -0.8 -1.8 Urease accessory protein UreJ compare
PP_1439 -0.7 -1.9 conserved exported protein of unknown function compare
PP_2403 -0.7 -1.4 Chemotaxis protein CheY compare
PP_2168 -0.7 -4.5 Transaldolase compare
PP_5499 -0.7 -2.8 conserved protein of unknown function compare
PP_3243 -0.7 -1.7 Acetyltransferase, GNAT family compare
PP_1362 -0.7 -2.0 pyruvate kinase II compare
PP_2018 -0.7 -2.6 adhesin-associated BNR repeat protein (from data) compare
PP_4099 -0.7 -6.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5104 -0.7 -4.1 thiazole synthase compare
PP_4546 -0.7 -2.8 ATP-dependent helicase HrpA compare
PP_2765 -0.7 -2.2 putative Sulfonate monooxygenase MsuD compare
PP_2442 -0.7 -1.7 conserved protein of unknown function, DUF480 family compare
PP_1293 -0.7 -1.3 molybdopterin synthase small subunit compare
PP_1217 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2414 -0.7 -1.1 conserved exported protein of unknown function compare
PP_5628 -0.6 -1.4 conserved protein of unknown function compare
PP_1353 -0.6 -0.4 conserved membrane protein of unknown function compare
PP_0775 -0.6 -1.6 conserved protein of unknown function compare
PP_t57 -0.6 -2.4 tRNA-Arg compare
PP_1702 -0.6 -1.6 Recombination-associated protein RdgC compare
PP_2622 -0.6 -2.8 conserved protein of unknown function compare
PP_0365 -0.6 -3.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2000 -0.6 -1.0 amidophosphoribosyl transferase compare
PP_1237 -0.6 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4739 -0.6 -2.2 conserved protein of unknown function compare
PP_4199 -0.6 -0.8 putative Lipoprotein compare
PP_0833 -0.6 -1.9 queuine tRNA-ribosyltransferase compare
PP_2025 -0.6 -1.7 Exonuclease SbcD compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_5422 -0.6 -1.8 hypothetical protein compare
PP_2070 -0.6 -1.9 Transcriptional regulator, AraC family compare
PP_4296 -0.6 -1.6 conserved exported protein of unknown function compare
PP_4782 -0.6 -2.9 Phosphomethylpyrimidine kinase compare
PP_0711 -0.6 -2.4 putative hydrolase compare
PP_4504 -0.6 -1.4 conserved exported protein of unknown function compare
PP_4481 -0.6 -3.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4480 -0.6 -3.9 arginine N-succinyltransferase, subunit alpha compare
PP_0914 -0.6 -4.2 GGDEF domain protein compare
PP_5216 -0.6 -1.8 exopolyphosphatase compare
PP_1734 -0.6 -0.7 Probable septum site-determining protein MinC compare
PP_4268 -0.6 -1.1 nucleoid-associated broad specificity regulator compare
PP_5008 -0.6 -1.1 Poly granule-associated protein compare
PP_1269 -0.6 -0.8 Universal stress protein family compare
PP_3384 -0.6 -1.7 gluconate 2-dehydrogenase gamma subunit compare
PP_3790 -0.6 -3.2 diaminopimelate epimerase compare
PP_5456 -0.6 -0.8 conserved protein of unknown function compare
PP_2907 -0.5 -1.9 DNA-binding response regulator compare
PP_1036 -0.5 -2.7 membrane-bound lytic murein transglycosylase F compare
PP_3164 -0.5 -1.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1455 -0.5 -2.2 conserved protein of unknown function compare
PP_3052 -0.5 -0.9 conserved protein of unknown function compare
PP_3580 -0.5 -1.7 conserved protein of unknown function compare
PP_1304 -0.5 -3.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5233 -0.5 -3.4 ammonium transporter AmtB compare
PP_2324 -0.5 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1051 -0.5 -2.1 Type II secretion pathway protein XcpV compare
PP_1672 -0.5 -2.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1650 -0.5 -4.2 Sensor protein GacS compare
PP_0566 -0.5 -1.0 translation-related factor compare
PP_1598 -0.5 -2.1 regulatory intramembrane protein RIP zinc protease compare
PP_1397 -0.5 -2.1 conserved protein of unknown function compare
PP_4424 -0.5 -1.9 Uncharacterized HTH-type transcriptional regulator y4tD compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-pyroglutamic acid in Pseudomonas putida KT2440

For nitrogen source L-pyroglutamic acid across organisms