Experiment set28IT041 for Pseudomonas putida KT2440

Compare to:

L-pyroglutamic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4909 -5.7 -10.2 phosphoserine phosphatase compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -5.5 -11.6 Carbamoyl-phosphate synthase small chain compare
PP_1988 -5.5 -11.2 3-isopropylmalate dehydrogenase compare
PP_0290 -5.3 -11.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -5.1 -7.0 Glutamate 5-kinase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4723 -4.8 -20.3 Carbamoyl-phosphate synthase large chain compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0966 -4.7 -15.5 Histidinol dehydrogenase compare
PP_0292 -4.6 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -4.5 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -4.4 -5.4 Acetylglutamate kinase compare
PP_3511 -4.4 -12.7 Branched-chain-amino-acid aminotransferase compare
PP_5155 -4.4 -7.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0967 -4.4 -13.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -4.3 -8.7 3-isopropylmalate dehydratase large subunit compare
PP_0083 -4.2 -5.8 tryptophan synthase beta chain compare
PP_4678 -4.2 -17.3 Ketol-acid reductoisomerase compare
PP_4680 -4.2 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4575 -4.2 -6.4 Urea amidolyase-related protein compare
PP_4364 -4.2 -7.8 putative Anti-sigma F factor antagonist compare
PP_1079 -4.2 -8.5 Ornithine carbamoyltransferase compare
PP_5185 -4.2 -9.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -4.2 -9.6 Argininosuccinate lyase compare
PP_0417 -4.1 -19.6 Anthranilate synthase component 1 compare
PP_0082 -4.1 -6.8 tryptophan synthase alpha chain compare
PP_5346 -4.1 -12.4 pyruvate carboxylase subunit B compare
PP_0420 -4.0 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -4.0 -8.1 Indole-3-glycerol phosphate synthase compare
PP_5128 -3.9 -7.7 Dihydroxy-acid dehydratase compare
PP_4576 -3.8 -12.6 allophanate hydrolase subunit compare
PP_5347 -3.8 -14.8 pyruvate carboxylase subunit A compare
PP_1986 -3.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_4577 -3.7 -9.0 UPF0271 protein PP_4577 compare
PP_4890 -3.7 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0289 -3.7 -9.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1110 -3.7 -3.9 serine acetyltransferase compare
PP_0965 -3.7 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -3.5 -13.5 Argininosuccinate synthase compare
PP_0421 -3.4 -8.3 Anthranilate phosphoribosyltransferase compare
PP_4679 -3.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4891 -3.2 -5.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5048 -3.2 -8.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4578 -3.2 -13.1 Major facilitator family transporter compare
PP_2001 -3.1 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_5114 -3.1 -2.9 putative adenine methyltransferase compare
PP_5015 -2.8 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -2.8 -10.8 2-isopropylmalate synthase compare
PP_1109 -2.7 -16.6 Transcriptional regulator, GntR family compare
PP_0127 -2.7 -9.2 Thiol:disulfide interchange protein compare
PP_5097 -2.7 -15.2 homoserine O-acetyltransferase compare
PP_4579 -2.7 -7.2 Transcriptional regulator, LysR family compare
PP_0164 -2.6 -10.4 conserved protein of unknown function compare
PP_5047 -2.6 -5.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5348 -2.5 -9.3 Transcriptional regulator, LysR family compare
PP_2328 -2.5 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_3821 -2.4 -13.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0291 -2.4 -3.1 conserved protein of unknown function compare
PP_2088 -2.4 -5.7 RNA polymerase sigma factor SigX compare
PP_2371 -2.3 -6.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -2.2 -6.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4943 -2.2 -3.3 putative Glycosyl transferase compare
PP_1111 -2.2 -6.6 putative Synthetase compare
PP_0809 -2.1 -10.9 disulfide bond formation protein B compare
PP_5098 -2.1 -9.0 methionine biosynthesis protein MetW compare
PP_4799 -2.0 -2.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0787 -2.0 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0362 -2.0 -11.6 Biotin synthase compare
PP_4892 -2.0 -5.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1589 -1.9 -10.8 uridylyltransferase compare
PP_4058 -1.9 -11.5 1,4-alpha-glucan branching enzyme compare
PP_1231 -1.9 -6.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2327 -1.9 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4940 -1.8 -8.8 Putative glycosyltransferase compare
PP_3484 -1.7 -4.1 Response regulator receiver protein compare
PP_2000 -1.7 -1.6 amidophosphoribosyl transferase compare
PP_2370 -1.7 -2.6 conserved protein of unknown function compare
PP_4696 -1.7 -6.1 Nitrogen regulation protein NR(I) compare
PP_2390 -1.5 -8.8 Transcriptional regulator, LysR family compare
PP_0339 -1.5 -5.6 Pyruvate dehydrogenase E1 component compare
PP_1468 -1.4 -1.9 Tyrosine recombinase XerD compare
PP_1912 -1.4 -5.4 Phosphate acyltransferase compare
PP_1664 -1.4 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_5313 -1.3 -2.7 DNA-binding protein HU-alpha compare
PP_1216 -1.3 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5303 -1.3 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0401 -1.2 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_2044 -1.2 -2.6 conserved inner membrane protein of unknown function compare
PP_0719 -1.2 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5322 -1.2 -5.9 putative metal ion transporter compare
PP_5198 -1.2 -3.4 conserved protein of unknown function compare
PP_5475 -1.2 -1.7 conserved protein of unknown function compare
PP_1217 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4964 -1.1 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_4984 -1.1 -7.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1779 -1.1 -5.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1801 -1.1 -7.9 Glycosyl transferase WbpY compare
PP_1804 -1.1 -7.6 Glycosyl transferase WbpL compare
PP_1994 -1.1 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4938 -1.1 -6.0 putative Glycosyl transferase compare
PP_4936 -1.1 -5.8 O-antigen polymerase compare
PP_1176 -1.0 -2.2 conserved protein of unknown function compare
PP_1654 -1.0 -2.4 cysteine synthase B compare
PP_3409 -1.0 -2.9 putative Cobalamin biosynthesis protein cobE compare
PP_4143 -1.0 -3.9 conserved protein of unknown function compare
PP_1799 -1.0 -7.8 GDP-mannose 4,6-dehydratase compare
PP_1800 -1.0 -7.6 Oxidoreductase Rmd compare
PP_0122 -1.0 -2.6 conserved exported protein of unknown function compare
PP_2402 -1.0 -1.6 putative Sensor histidine kinase compare
PP_1802 -0.9 -7.7 glycosyl transferase compare
PP_4942 -0.9 -2.2 conserved protein of unknown function compare
PP_5095 -0.9 -1.4 pyrroline-5-carboxylate reductase compare
PP_4700 -0.9 -3.3 pantothenate synthetase compare
PP_1776 -0.9 -7.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0366 -0.9 -3.7 dethiobiotin synthetase compare
PP_4695 -0.9 -6.6 Sensory box histidine kinase compare
PP_1805 -0.9 -7.7 Polysaccharide biosynthesis protein compare
PP_5230 -0.9 -2.6 Tyrosine recombinase XerC compare
PP_4902 -0.9 -1.8 Oligoribonuclease compare
PP_0364 -0.8 -5.4 pimeloyl-[acp] methyl ester esterase compare
PP_1097 -0.8 -1.4 Methionine--tRNA ligase compare
PP_1780 -0.8 -7.5 putative mannosyltransferase compare
PP_5453 -0.8 -1.7 conserved protein of unknown function compare
PP_0365 -0.8 -5.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0066 -0.8 -3.3 Ribosomal RNA small subunit methyltransferase B compare
PP_4342 -0.8 -2.2 flagellar synthesis regulator, putative ATPase compare
PP_1186 -0.8 -2.8 two component system DNA-binding transcriptional dual regulator compare
PP_0377 -0.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_5054 -0.8 -1.2 glutaredoxin 3 compare
PP_1128 -0.8 -2.1 OmpA family protein compare
PP_1778 -0.8 -3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_2681 -0.8 -1.9 coenzyme PQQ synthesis protein D compare
PP_4480 -0.8 -4.5 arginine N-succinyltransferase, subunit alpha compare
PP_0363 -0.8 -5.8 8-amino-7-oxononanoate synthase compare
PP_2345 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4793 -0.8 -1.7 conserved protein of unknown function compare
PP_4262 -0.8 -1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4099 -0.8 -6.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3946 -0.8 -1.4 HTH-type transcriptional repressor NicR compare
PP_0593 -0.8 -1.0 putative ribosome-binding factor compare
PP_3411 -0.8 -1.4 conserved protein of unknown function compare
PP_4789 -0.8 -3.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5227 -0.8 -4.5 diaminopimelate decarboxylase compare
PP_1237 -0.8 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1553 -0.8 -1.8 conserved protein of unknown function compare
PP_5748 -0.7 -1.3 cytochrome c heme lyase subunit compare
PP_2388 -0.7 -2.4 Transporter, LysE family compare
PP_5055 -0.7 -2.7 Sulfurtransferase compare
PP_5652 -0.7 -1.4 conserved protein of unknown function, phage origin compare
PP_4546 -0.7 -2.8 ATP-dependent helicase HrpA compare
PP_0513 -0.7 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1344 -0.7 -2.0 conserved protein of unknown function compare
PP_4804 -0.7 -1.6 RlpA-like lipoprotein compare
PP_5445 -0.7 -2.2 conserved protein of unknown function compare
PP_3947 -0.7 -2.8 nicotinate dehydrogenase subunit A compare
PP_4264 -0.7 -3.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5106 -0.7 -2.5 conserved inner membrane protein compare
PP_5604 -0.7 -1.5 putative subtilisin-like serine protease compare
PP_2475 -0.7 -2.6 Transcriptional regulator, TetR family compare
PP_2922 -0.7 -3.2 Urea amidolyase-related protein compare
PP_2168 -0.7 -3.8 Transaldolase compare
PP_3509 -0.6 -2.4 Glyoxalase family protein compare
PP_1788 -0.6 -2.0 conserved protein of unknown function compare
PP_1493 -0.6 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2214 -0.6 -2.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1439 -0.6 -1.0 conserved exported protein of unknown function compare
PP_2414 -0.6 -1.2 conserved exported protein of unknown function compare
PP_4126 -0.6 -0.7 NADH-quinone oxidoreductase subunit I compare
PP_5000 -0.6 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_5546 -0.6 -1.4 conserved protein of unknown function compare
PP_4267 -0.6 -1.6 Recombination protein RecR compare
PP_4004 -0.6 -1.4 DNA translocase FtsK compare
PP_4693 -0.6 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_5267 -0.6 -1.4 putative cytochrome c5 compare
PP_5704 -0.6 -2.7 conserved protein of unknown function compare
PP_0608 -0.6 -2.9 putative type 4 fimbrial biogenesis protein compare
PP_0630 -0.6 -0.9 DNA gyrase inhibitor YacG compare
PP_3789 -0.6 -3.8 putative Efflux transporter compare
PP_5328 -0.6 -1.7 putative phosphate transport system permease protein compare
PP_1218 -0.6 -1.7 putative acyl-CoA thioesterase compare
PP_4684 -0.6 -3.1 conserved protein of unknown function with kinase-like domain compare
PP_4504 -0.6 -1.1 conserved exported protein of unknown function compare
PP_1397 -0.6 -1.7 conserved protein of unknown function compare
PP_4828 -0.6 -0.8 Precorrin-8X methylmutase compare
PP_5327 -0.6 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0711 -0.6 -2.4 putative hydrolase compare
PP_3341 -0.6 -1.8 nickel-responsive regulator compare
PP_0607 -0.6 -1.4 putative Type IV pili biogenesis protein FimT compare
PP_1646 -0.6 -2.8 putative Thioredoxin compare
PP_4018 -0.6 -1.6 Acetyltransferase, GNAT family compare
PP_4782 -0.6 -2.4 Phosphomethylpyrimidine kinase compare
PP_5337 -0.6 -1.8 LysR family transcriptional regulator compare
PP_2768 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1293 -0.6 -1.0 molybdopterin synthase small subunit compare
PP_2748 -0.5 -1.5 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2030 -0.5 -2.3 conserved protein of unknown function compare
PP_4379 -0.5 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1441 -0.5 -2.5 tRNA (cmo5U34)-methyltransferase compare
PP_1309 -0.5 -2.9 conserved exported protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-pyroglutamic acid in Pseudomonas putida KT2440

For nitrogen source L-pyroglutamic acid across organisms