Experiment set28IT041 for Pseudomonas putida KT2440

Compare to:

L-pyroglutamic acid nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_0801 +1.0 2.0 conserved exported protein of unknown function compare
PP_1215 +1.0 1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5393 +0.9 1.4 putative metal-binding chaperone compare
PP_1142 +0.9 1.3 conserved protein of unknown function compare
PP_3365 +0.8 1.5 Acetolactate synthase compare
PP_1410 +0.8 1.4 conserved protein of unknown function compare
PP_2530 +0.8 2.2 conserved protein of unknown function compare
PP_4994 +0.8 4.3 conserved protein of unknown function compare
PP_2341 +0.7 2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_3883 +0.7 2.6 putative Phage holin compare
PP_2999 +0.7 1.8 Glyoxalase family protein compare
PP_3971 +0.7 1.5 conserved protein of unknown function compare
PP_4271 +0.7 1.0 conserved protein of unknown function compare
PP_5053 +0.7 4.1 Protein-export protein SecB compare
PP_1898 +0.7 2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5706 +0.6 2.2 Sec translocation complex - SecG subunit compare
PP_3307 +0.6 1.6 conserved protein of unknown function compare
PP_3532 +0.6 1.6 Transcriptional regulator, AsnC family compare
PP_0959 +0.6 1.6 phospholipid ABC transporter compare
PP_t12 +0.6 1.0 tRNA-Thr compare
PP_3398 +0.6 1.9 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1045 +0.6 0.8 Type II secretion pathway protein XcpP compare
PP_t29 +0.6 1.6 tRNA-Ala compare
PP_5675 +0.6 2.4 conserved protein of unknown function compare
PP_4993 +0.5 2.4 Glutathione synthetase compare
PP_4227 +0.5 1.3 conserved protein of unknown function compare
PP_4787 +0.5 2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1198 +0.5 2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0025 +0.5 1.1 hypothetical protein compare
PP_2568 +0.5 1.2 Ring-cleaving dioxygenase compare
PP_4171 +0.5 4.8 conserved exported protein of unknown function compare
PP_0905 +0.5 1.4 conserved exported protein of unknown function compare
PP_2903 +0.5 1.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5610 +0.5 1.3 protein of unknown function compare
PP_3094 +0.5 1.3 conserved exported protein of unknown function compare
PP_3480 +0.5 1.9 conserved protein of unknown function compare
PP_2226 +0.5 2.6 putative K(+)/H(+) antiporter subunit F compare
PP_1691 +0.5 1.7 conserved protein of unknown function compare
PP_2163 +0.5 3.0 VacJ lipoprotein compare
PP_2291 +0.5 1.8 conserved protein of unknown function compare
PP_5508 +0.5 1.0 conserved protein of unknown function compare
PP_2722 +0.5 1.8 conserved protein of unknown function compare
PP_1655 +0.5 3.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0575 +0.5 3.2 conserved membrane protein of unknown function compare
PP_0086 +0.5 1.5 conserved protein of unknown function compare
PP_0194 +0.5 2.2 Transcriptional regulatory protein AlgP compare
PP_5083 +0.5 1.9 putative Type IV pili biogenesis protein PilM compare
PP_5338 +0.5 1.0 aspartate ammonia-lyase compare
PP_1113 +0.5 3.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4332 +0.5 1.5 Chemotaxis protein CheW compare
PP_4835 +0.4 1.2 conserved exported protein of unknown function compare
PP_2087 +0.4 1.3 CmpX protein compare
PP_4223 +0.4 1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5582 +0.4 1.2 conserved protein of unknown function compare
PP_2889 +0.4 2.4 putative Transmembrane regulator PrtR compare
PP_3460 +0.4 1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4559 +0.4 2.1 peptide deformylase compare
PP_4561 +0.4 0.7 stress response protein compare
PP_3143 +0.4 1.9 Transcriptional regulator, LysR family compare
PP_4367 +0.4 1.6 Flagellar assembly protein FliH compare
PP_4757 +0.4 2.8 D-glucarate dehydratase / L-idarate epimerase compare
PP_4038 +0.4 2.5 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_3280 +0.4 2.2 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_0258 +0.4 1.9 regulator of murein cross-linking compare
PP_4797 +0.4 1.1 conserved protein of unknown function compare
PP_3643 +0.4 1.5 putative Oxidoreductase compare
PP_4396 +0.4 1.4 conserved protein of unknown function compare
PP_3234 +0.4 1.7 Heat shock protein, HSP20 family compare
PP_2802 +0.4 1.9 Amino acid permease family protein compare
PP_2958 +0.4 2.4 Glutaredoxin compare
PP_0692 +0.4 1.9 conserved protein of unknown function compare
PP_5331 +0.4 1.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1808 +0.4 1.6 glucose-6-phosphate isomerase compare
PP_2972 +0.4 1.3 conserved protein of unknown function compare
PP_5658 +0.4 1.3 protein of unknown function compare
PP_2712 +0.4 1.0 conserved exported protein of unknown function compare
PP_0232 +0.4 0.7 ATP-binding taurine transporter subunit compare
PP_1824 +0.4 1.0 Smr domain protein compare
PP_1013 +0.4 2.4 Sensor histidine kinase compare
PP_5621 +0.4 0.8 protein of unknown function compare
PP_0236 +0.4 1.5 NAD(P)H-dependent FMN reductase subunit compare
PP_2878 +0.4 1.0 conserved protein of unknown function compare
PP_2503 +0.4 1.5 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_5017 +0.4 0.7 Sec-independent protein translocase protein TatB compare
PP_1742 +0.4 1.8 conserved inner membrane protein of unknown function compare
PP_5735 +0.4 1.4 conserved hypothetical protein compare
PP_2581 +0.4 0.8 conserved protein of unknown function compare
PP_0197 +0.4 1.8 conserved protein of unknown function compare
PP_4817 +0.4 1.9 MaoC domain protein compare
PP_2793 +0.4 1.3 Acyl-CoA dehydrogenase family protein compare
PP_2210 +0.4 1.5 LysR family transcriptional regulator compare
PP_5423 +0.4 0.9 conserved membrane protein of unknown function compare
PP_2060 +0.4 1.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4328 +0.4 2.0 conserved protein of unknown function compare
PP_2462 +0.4 1.3 conserved protein of unknown function compare
PP_5671 +0.4 1.9 conserved protein of unknown function compare
PP_3531 +0.4 1.9 conserved exported protein of unknown function compare
PP_0001 +0.4 0.8 probable chromosome-partitioning protein compare
PP_3374 +0.4 1.5 conserved protein of unknown function compare
PP_5008 +0.4 1.1 Poly granule-associated protein compare
PP_5232 +0.4 0.9 conserved protein of unknown function compare
PP_1783 +0.4 0.6 dTDP-glucose pyrophosphorylase compare
PP_5575 +0.4 1.0 conserved protein of unknown function compare
PP_4929 +0.4 1.7 Transcriptional regulator, LysR family compare
PP_3512 +0.4 1.2 conserved membrane protein of unknown function compare
PP_4066 +0.4 1.4 methylglutaconyl-CoA hydratase compare
PP_1381 +0.4 0.7 4-carboxymuconolactone decarboxylase compare
PP_4173 +0.4 2.8 Sensor histidine kinase/response regulator compare
PP_2126 +0.4 1.6 DNA-binding response regulator, LuxR family compare
PP_3902 +0.4 1.0 conserved protein of unknown function compare
PP_4528 +0.3 0.8 conserved protein of unknown function compare
PP_4706 +0.3 1.6 conserved protein of unknown function compare
PP_1736 +0.3 1.2 conserved protein of unknown function compare
PP_3145 +0.3 2.4 conserved protein of unknown function compare
PP_2306 +0.3 1.1 conserved exported protein of unknown function compare
PP_3392 +0.3 1.0 conserved protein of unknown function compare
PP_5717 +0.3 1.5 conserved protein of unknown function compare
PP_0839 +0.3 1.2 tRNA Cm32/Um32 methyltransferase compare
PP_1099 +0.3 0.8 Cold shock protein CapB compare
PP_1438 +0.3 1.6 response regulator compare
PP_2123 +0.3 2.0 molybdenum::molybdopterin ligase compare
PP_5191 +0.3 1.0 conserved exported protein of unknown function compare
PP_5711 +0.3 1.6 protein of unknown function compare
PP_5487 +0.3 1.3 conserved protein of unknown function compare
PP_4701 +0.3 0.6 glucose-6-phosphate isomerase compare
PP_4199 +0.3 0.6 putative Lipoprotein compare
PP_2360 +0.3 2.0 putative type 1 pili subunit CsuA/B protein compare
PP_4102 +0.3 1.7 conserved protein of unknown function compare
PP_3475 +0.3 1.9 putative type II secretory pathway, pseudopilin pulG-related signal peptide protein compare
PP_2172 +0.3 1.7 conserved exported protein of unknown function compare
PP_4150 +0.3 2.2 microcin C transporter - ATP binding subunit compare
PP_4820 +0.3 1.6 tRNA-dihydrouridine synthase B compare
PP_4861 +0.3 1.7 conserved protein of unknown function compare
PP_0856 +0.3 1.5 conserved lipoprotein of unknown function compare
PP_3770 +0.3 0.8 conserved protein of unknown function compare
PP_3539 +0.3 0.8 putative Transcriptional regulator compare
PP_1662 +0.3 1.5 conserved protein of unknown function compare
PP_0921 +0.3 1.6 Transcriptional regulator, ArsR family compare
PP_0574 +0.3 2.8 DNA-binding response regulator, LuxR family compare
PP_1151 +0.3 1.8 conserved protein of unknown function compare
PP_3380 +0.3 1.1 2-ketogluconate utilization repressor compare
PP_1647 +0.3 1.9 conserved protein of unknown function compare
PP_1979 +0.3 1.6 putative Hydrolase compare
PP_1178 +0.3 1.1 conserved protein of unknown function compare
PP_1074 +0.3 1.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5169 +0.3 2.1 sulfate ABC transporter, inner membrane subunit CysW compare
PP_0048 +0.3 0.9 conserved protein of unknown function compare
PP_5469 +0.3 1.7 putative SAM-dependent methyltransferase compare
PP_1982 +0.3 1.7 small heat shock protein IbpA compare
PP_5667 +0.3 1.1 putative microcin B17-like-processing protein, McbC family compare
PP_0958 +0.3 1.8 phospholipid ABC transporter ATP-binding subunit compare
PP_2778 +0.3 2.1 3-oxoacyl-(Acyl-carrier-protein) synthase II compare
PP_2593 +0.3 1.5 Ferric siderophore ABC transporter, permease protein compare
PP_3810 +0.3 1.1 conserved protein of unknown function compare
PP_2848 +0.3 1.4 urease accessory protein compare
PP_5733 +0.3 2.0 putative metal-binding protein compare
PP_1623 +0.3 2.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_3874 +0.3 0.9 conserved protein of unknown function compare
PP_3190 +0.3 1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_3328 +0.3 1.1 putative Ring-cleaving dioxygenase compare
PP_4238 +0.3 1.2 conserved protein of unknown function compare
PP_4581 +0.3 0.9 putative amidotransferase compare
PP_0092 +0.3 1.5 putative lipoprotein compare
PP_5066 +0.3 1.4 K(+)/H(+) antiporter NhaP2 compare
PP_4541 +0.3 1.7 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_4833 +0.3 2.0 SURF1 domain protein compare
PP_4365 +0.3 1.4 Flagellar protein FliJ compare
PP_5495 +0.3 0.5 protein of unknown function compare
PP_3028 +0.3 1.5 conserved protein of unknown function compare
PP_0941 +0.3 1.0 putative ribosome associated protein compare
PP_3034 +0.3 1.2 putative Regulator protein compare
PP_0054 +0.3 1.9 conserved membrane protein of unknown function compare
PP_5691 +0.3 1.8 conserved protein of unknown function compare
PP_4394 +0.3 2.3 flagella basal body P-ring formation protein compare
PP_5451 +0.3 1.2 protein of unknown function compare
PP_1184 +0.3 1.9 Dienelactone hydrolase family protein compare
PP_3935 +0.3 1.1 conserved protein of unknown function compare
PP_4265 +0.3 1.2 DNA-binding transcriptional dual regulator compare
PP_3714 +0.3 1.8 Muconolactone Delta-isomerase compare
PP_5063 +0.3 1.2 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_3314 +0.3 1.5 Heat shock protein, HSP20 family compare
PP_0960 +0.3 1.2 phospholipid ABC transporter binding protein compare
PP_5491 +0.3 1.0 conserved protein of unknown function with SEC-C motif domain compare
PP_5446 +0.3 1.3 protein of unknown function compare
PP_5565 +0.3 1.7 conserved protein of unknown function compare
PP_0547 +0.3 1.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4569 +0.3 1.2 conserved protein of unknown function compare
PP_1929 +0.3 2.0 arsenite/antimonite transporter compare
PP_0173 +0.3 2.0 putative transcriptional factor-related protein compare
PP_5093 +0.3 0.4 twitching motility protein compare
PP_4361 +0.3 1.6 Flagellar hook-length control protein FliK compare
PP_4382 +0.3 2.1 Peptidoglycan hydrolase FlgJ compare
PP_3989 +0.3 1.4 DNA-cytosine methyltransferase compare
PP_5551 +0.3 1.4 conserved protein of unknown function compare
PP_4792 +0.3 1.0 conserved exported protein of unknown function compare
PP_5563 +0.3 1.9 conserved membrane protein of unknown function compare
PP_5388 +0.3 1.2 probable exported copper efflux protein compare
PP_4760 +0.3 0.9 Alcohol dehydrogenase, zinc-containing compare
PP_1392 +0.3 2.1 putative NAD-binding protein compare
PP_4808 +0.3 0.7 23S rRNA m3psi1915 methyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source L-pyroglutamic acid in Pseudomonas putida KT2440

For nitrogen source L-pyroglutamic acid across organisms