Experiment set28IT040 for Pseudomonas putida KT2440

Compare to:

L-Pipecolic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.6 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -4.9 -12.3 3-isopropylmalate dehydrogenase compare
PP_0082 -4.5 -6.2 tryptophan synthase alpha chain compare
PP_1088 -4.5 -16.0 Argininosuccinate synthase compare
PP_0293 -4.4 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -4.3 -12.6 Branched-chain-amino-acid aminotransferase compare
PP_1986 -4.2 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_4724 -4.2 -12.9 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.1 -23.9 Carbamoyl-phosphate synthase large chain compare
PP_0967 -4.1 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -3.9 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -3.9 -6.5 tryptophan synthase beta chain compare
PP_4678 -3.8 -15.9 Ketol-acid reductoisomerase compare
PP_1079 -3.7 -9.9 Ornithine carbamoyltransferase compare
PP_0420 -3.7 -14.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5260 -3.7 -10.4 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_4679 -3.7 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.7 -15.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -3.7 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -3.7 -10.5 phosphoserine phosphatase compare
PP_0966 -3.6 -13.6 Histidinol dehydrogenase compare
PP_0421 -3.6 -9.9 Anthranilate phosphoribosyltransferase compare
PP_4890 -3.5 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -3.5 -8.6 Argininosuccinate lyase compare
PP_0289 -3.5 -10.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -3.5 -18.5 Anthranilate synthase component 1 compare
PP_1985 -3.4 -8.1 3-isopropylmalate dehydratase large subunit compare
PP_4058 -3.4 -16.4 1,4-alpha-glucan branching enzyme compare
PP_0422 -3.4 -9.0 Indole-3-glycerol phosphate synthase compare
PP_5097 -3.1 -16.1 homoserine O-acetyltransferase compare
PP_0965 -3.1 -11.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5047 -3.1 -8.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5128 -3.0 -8.3 Dihydroxy-acid dehydratase compare
PP_1912 -3.0 -8.3 Phosphate acyltransferase compare
PP_0292 -3.0 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4999 -2.9 -3.4 dihydroorotase-like protein compare
PP_5098 -2.8 -10.9 methionine biosynthesis protein MetW compare
PP_2001 -2.8 -13.1 O-succinylhomoserine sulfhydrylase compare
PP_5289 -2.8 -4.1 Acetylglutamate kinase compare
PP_4108 -2.7 -7.7 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_5185 -2.7 -8.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1589 -2.6 -12.8 uridylyltransferase compare
PP_5048 -2.6 -6.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5257 -2.6 -14.4 L-pipecolate oxidase conserved
PP_5014 -2.4 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_5258 -2.4 -9.3 L-piperidine-6-carboxylate dehydrogenase conserved
PP_2088 -2.3 -5.9 RNA polymerase sigma factor SigX compare
PP_1025 -2.2 -10.2 2-isopropylmalate synthase compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0339 -2.0 -6.5 Pyruvate dehydrogenase E1 component compare
PP_0719 -2.0 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2402 -2.0 -2.9 putative Sensor histidine kinase compare
PP_3999 -2.0 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0291 -2.0 -2.4 conserved protein of unknown function compare
PP_5015 -2.0 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1109 -1.9 -12.5 Transcriptional regulator, GntR family compare
PP_2371 -1.9 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_0401 -1.7 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_1110 -1.7 -5.5 serine acetyltransferase compare
PP_2327 -1.7 -9.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4004 -1.6 -2.6 DNA translocase FtsK compare
PP_2168 -1.6 -9.2 Transaldolase compare
PP_4895 -1.5 -3.6 tRNA dimethylallyltransferase compare
PP_2328 -1.5 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_1215 -1.5 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0691 -1.5 -4.9 Glutamate 5-kinase compare
PP_1111 -1.4 -5.0 putative Synthetase compare
PP_1664 -1.4 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_2370 -1.4 -3.0 conserved protein of unknown function compare
PP_5095 -1.4 -2.1 pyrroline-5-carboxylate reductase compare
PP_1994 -1.3 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_4106 -1.3 -9.6 gamma-aminobutyrate permease compare
PP_5322 -1.3 -5.5 putative metal ion transporter compare
PP_2000 -1.3 -1.7 amidophosphoribosyl transferase compare
PP_2388 -1.3 -4.8 Transporter, LysE family compare
PP_4493 -1.3 -10.0 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_5076 -1.3 -10.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_1231 -1.2 -5.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5075 -1.2 -9.1 glutamate synthase (NADPH) beta subunit compare
PP_3590 -1.2 -5.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5279 -1.2 -3.1 conserved protein of unknown function compare
PP_2390 -1.2 -6.7 Transcriptional regulator, LysR family compare
PP_0833 -1.1 -2.4 queuine tRNA-ribosyltransferase compare
PP_5227 -1.1 -6.6 diaminopimelate decarboxylase compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5303 -1.1 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0888 -1.1 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2433 -1.0 -2.6 conserved protein of unknown function compare
PP_0787 -1.0 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4696 -0.9 -4.2 Nitrogen regulation protein NR(I) compare
PP_5483 -0.9 -2.3 conserved protein of unknown function compare
PP_0630 -0.9 -1.3 DNA gyrase inhibitor YacG compare
PP_5008 -0.9 -2.0 Poly granule-associated protein compare
PP_4789 -0.9 -3.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4136 -0.9 -1.1 Transcriptional regulator, LuxR family compare
PP_2280 -0.8 -2.3 conserved protein of unknown function compare
PP_1783 -0.8 -0.8 dTDP-glucose pyrophosphorylase compare
PP_4546 -0.8 -3.1 ATP-dependent helicase HrpA compare
PP_2756 -0.8 -1.6 conserved protein of unknown function compare
PP_5230 -0.8 -2.1 Tyrosine recombinase XerC compare
PP_1022 -0.8 -2.8 glucose 6-phosphate-1-dehydrogenase compare
PP_1214 -0.8 -2.0 putative transcriptional regulatory protein compare
PP_5748 -0.8 -1.7 cytochrome c heme lyase subunit compare
PP_4480 -0.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_4964 -0.8 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_2302 -0.7 -2.5 DNA-binding, ATP-dependent protease compare
PP_2307 -0.7 -2.5 conserved protein of unknown function compare
PP_4213 -0.7 -2.6 putative dipeptidase compare
PP_0832 -0.7 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4695 -0.7 -5.5 Sensory box histidine kinase compare
PP_4944 -0.7 -2.0 Carbamoyltransferase compare
PP_3647 -0.6 -3.1 putative Oxidoreductase compare
PP_1217 -0.6 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4364 -0.6 -3.1 putative Anti-sigma F factor antagonist compare
PP_3924 -0.6 -3.0 conserved protein of unknown function compare
PP_2414 -0.6 -0.9 conserved exported protein of unknown function compare
PP_2462 -0.6 -0.9 conserved protein of unknown function compare
PP_5337 -0.6 -2.0 LysR family transcriptional regulator compare
PP_4226 -0.6 -3.1 conserved protein of unknown function compare
PP_2030 -0.6 -2.8 conserved protein of unknown function compare
PP_3473 -0.6 -1.5 curli secretion and assembly outer membrane associated component compare
PP_1702 -0.6 -1.6 Recombination-associated protein RdgC compare
PP_0914 -0.6 -4.0 GGDEF domain protein compare
PP_3892 -0.6 -1.5 conserved protein of unknown function compare
PP_3318 -0.6 -1.7 conserved protein of unknown function compare
PP_4880 -0.6 -3.0 exoribonuclease R compare
PP_0182 -0.6 -1.8 conserved protein of unknown function compare
PP_3234 -0.6 -1.5 Heat shock protein, HSP20 family compare
PP_4109 -0.6 -1.3 conserved protein of unknown function compare
PP_4133 -0.6 -1.6 Transcriptional regulator-related protein compare
PP_1439 -0.6 -1.2 conserved exported protein of unknown function compare
PP_4829 -0.5 -1.8 putative precorrin-3B synthase compare
PP_1656 -0.5 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_5216 -0.5 -1.4 exopolyphosphatase compare
PP_3884 -0.5 -2.5 Phage holin, lambda family compare
PP_4782 -0.5 -2.0 Phosphomethylpyrimidine kinase compare
PP_5104 -0.5 -3.2 thiazole synthase compare
PP_5001 -0.5 -1.5 protease HslVU, ATPase component compare
PP_t10 -0.5 -1.3 tRNA-Pro compare
PP_1503 -0.5 -1.9 conserved protein of unknown function compare
PP_0122 -0.5 -1.9 conserved exported protein of unknown function compare
PP_1836 -0.5 -1.2 putative metal transporter, ZIP family compare
PP_1468 -0.5 -1.5 Tyrosine recombinase XerD compare
PP_5628 -0.5 -1.5 conserved protein of unknown function compare
PP_1834 -0.5 -2.2 conserved protein of unknown function compare
PP_2624 -0.5 -2.2 conserved protein of unknown function compare
PP_4122 -0.5 -0.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4593 -0.5 -1.2 conserved protein of unknown function compare
PP_1493 -0.5 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0887 -0.5 -3.0 Sensor histidine kinase compare
PP_5652 -0.5 -1.3 conserved protein of unknown function, phage origin compare
PP_4808 -0.5 -1.4 23S rRNA m3psi1915 methyltransferase compare
PP_4847 -0.5 -1.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_4481 -0.5 -2.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5143 -0.5 -1.3 conserved membrane protein of unknown function compare
PP_5253 -0.5 -1.5 Arylesterase compare
PP_4504 -0.5 -1.0 conserved exported protein of unknown function compare
PP_4961 -0.5 -1.0 putative Lipoprotein compare
PP_5659 -0.5 -2.1 protein of unknown function compare
PP_4104 -0.5 -2.8 Glutathione S-transferase family protein compare
PP_3121 -0.5 -1.7 transcriptional regulator, LysR family compare
PP_3241 -0.5 -1.1 conserved exported protein of unknown function compare
PP_4997 -0.5 -0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_1208 -0.5 -1.6 conserved protein of unknown function, SlyX family compare
PP_1224 -0.5 -3.1 periplasmic subunit of the TolQRA transport system compare
PP_2820 -0.5 -1.3 HTH-type transcriptional regulator nfxB compare
PP_3474 -0.5 -2.7 putative Curli fiber protein CsgE compare
PP_3649 -0.5 -0.6 Transcriptional regulator, GntR family compare
PP_5500 -0.5 -1.8 protein of unknown function compare
PP_1872 -0.5 -3.5 glutamate-pyruvate aminotransferase compare
PP_2074 -0.5 -1.6 Transcriptional regulator, LysR family compare
PP_4362 -0.5 -1.4 conserved protein of unknown function compare
PP_1697 -0.5 -1.7 transcriptional regulator, GntR family compare
PP_0585 -0.4 -1.2 putative metal-sensitive transcriptional regulator, MerR family compare
PP_5350 -0.4 -2.4 Transcriptional regulator, RpiR family compare
PP_2145 -0.4 -2.7 beta-N-acetylglucosaminidase compare
PP_2340 -0.4 -1.6 conserved protein of unknown function compare
PP_3637 -0.4 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4628 -0.4 -2.3 conserved protein of unknown function compare
PP_5575 -0.4 -1.2 conserved protein of unknown function compare
PP_4287 -0.4 -2.0 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
PP_t57 -0.4 -2.3 tRNA-Arg compare
PP_3244 -0.4 -1.5 Magnesium transporter, MgtC family compare
PP_2070 -0.4 -1.2 Transcriptional regulator, AraC family compare
PP_0566 -0.4 -0.9 translation-related factor compare
PP_0153 -0.4 -0.7 hypothetical protein compare
PP_4296 -0.4 -1.1 conserved exported protein of unknown function compare
PP_5090 -0.4 -0.9 putative cell division protein compare
PP_3597 -0.4 -1.5 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_2044 -0.4 -1.2 conserved inner membrane protein of unknown function compare
PP_3935 -0.4 -1.7 conserved protein of unknown function compare
PP_1190 -0.4 -1.8 conserved protein of unknown function compare
PP_2929 -0.4 -2.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_0513 -0.4 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3384 -0.4 -1.5 gluconate 2-dehydrogenase gamma subunit compare
PP_0653 -0.4 -1.1 conserved protein of unknown function compare
PP_2203 -0.4 -1.5 conserved protein of unknown function compare
PP_5508 -0.4 -0.8 conserved protein of unknown function compare
PP_5035 -0.4 -2.1 Histidine utilization repressor compare
PP_2389 -0.4 -2.1 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Pipecolic Acid in Pseudomonas putida KT2440

For nitrogen source L-Pipecolic Acid across organisms