Experiment set28IT039 for Pseudomonas putida KT2440

Compare to:

L-Pipecolic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0290 -4.5 -11.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4724 -4.4 -17.6 Carbamoyl-phosphate synthase small chain compare
PP_1988 -4.4 -12.2 3-isopropylmalate dehydrogenase compare
PP_0293 -4.4 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -4.3 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_3511 -4.2 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_0289 -4.1 -9.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4723 -4.1 -22.9 Carbamoyl-phosphate synthase large chain compare
PP_0083 -4.1 -6.3 tryptophan synthase beta chain compare
PP_0292 -4.1 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -4.0 -13.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -4.0 -7.6 tryptophan synthase alpha chain compare
PP_4909 -3.9 -11.8 phosphoserine phosphatase compare
PP_5289 -3.9 -7.0 Acetylglutamate kinase compare
PP_0966 -3.8 -14.4 Histidinol dehydrogenase compare
PP_5048 -3.8 -8.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0184 -3.8 -9.1 Argininosuccinate lyase compare
PP_0422 -3.8 -10.0 Indole-3-glycerol phosphate synthase compare
PP_4680 -3.8 -17.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -3.8 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -3.7 -18.7 Anthranilate synthase component 1 compare
PP_4679 -3.7 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -3.7 -5.9 3-isopropylmalate dehydratase small subunit compare
PP_1088 -3.6 -13.2 Argininosuccinate synthase compare
PP_0420 -3.6 -11.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4890 -3.6 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -3.5 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -3.5 -7.6 Anthranilate phosphoribosyltransferase compare
PP_4678 -3.3 -18.3 Ketol-acid reductoisomerase compare
PP_4058 -3.3 -15.5 1,4-alpha-glucan branching enzyme compare
PP_0965 -3.2 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -3.1 -7.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -3.0 -10.5 Dihydroxy-acid dehydratase compare
PP_5258 -3.0 -8.9 L-piperidine-6-carboxylate dehydrogenase conserved
PP_1079 -2.8 -10.3 Ornithine carbamoyltransferase compare
PP_5097 -2.8 -16.1 homoserine O-acetyltransferase compare
PP_5260 -2.8 -9.4 2-oxoadipate decarboxylase/hydroxylase (2-hydroxyglutarate synthase) (from data) compare
PP_5155 -2.8 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1589 -2.7 -12.7 uridylyltransferase compare
PP_2371 -2.7 -7.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -2.7 -12.1 O-succinylhomoserine sulfhydrylase compare
PP_5098 -2.7 -9.6 methionine biosynthesis protein MetW compare
PP_5047 -2.6 -8.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5257 -2.4 -13.7 L-pipecolate oxidase conserved
PP_1025 -2.3 -11.7 2-isopropylmalate synthase compare
PP_4910 -2.3 -2.6 conserved protein of unknown function compare
PP_2328 -2.3 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_4108 -2.2 -7.6 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_4799 -2.2 -1.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1110 -2.1 -6.7 serine acetyltransferase compare
PP_3999 -2.1 -6.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1664 -2.1 -5.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1109 -2.0 -13.2 Transcriptional regulator, GntR family compare
PP_2088 -2.0 -5.5 RNA polymerase sigma factor SigX compare
PP_1912 -1.9 -6.7 Phosphate acyltransferase compare
PP_2370 -1.9 -3.1 conserved protein of unknown function compare
PP_5015 -1.9 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0888 -1.7 -3.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2327 -1.7 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1215 -1.5 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_0691 -1.5 -5.8 Glutamate 5-kinase compare
PP_4106 -1.5 -9.4 gamma-aminobutyrate permease compare
PP_1231 -1.5 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1293 -1.4 -2.3 molybdopterin synthase small subunit compare
PP_0339 -1.4 -5.7 Pyruvate dehydrogenase E1 component compare
PP_0787 -1.4 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0291 -1.4 -2.4 conserved protein of unknown function compare
PP_2168 -1.3 -7.4 Transaldolase compare
PP_1702 -1.3 -2.8 Recombination-associated protein RdgC compare
PP_4804 -1.3 -2.1 RlpA-like lipoprotein compare
PP_3590 -1.3 -6.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5090 -1.3 -1.7 putative cell division protein compare
PP_2388 -1.2 -4.4 Transporter, LysE family compare
PP_1216 -1.2 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4493 -1.2 -9.7 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_5322 -1.2 -5.9 putative metal ion transporter compare
PP_1111 -1.2 -3.8 putative Synthetase compare
PP_0719 -1.2 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5075 -1.1 -8.5 glutamate synthase (NADPH) beta subunit compare
PP_4789 -1.1 -3.9 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4895 -1.1 -2.9 tRNA dimethylallyltransferase compare
PP_5076 -1.1 -8.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_1994 -1.0 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4902 -1.0 -2.2 Oligoribonuclease compare
PP_4004 -1.0 -2.2 DNA translocase FtsK compare
PP_0065 -1.0 -2.7 NAD-binding component of TrK potassium transporter compare
PP_0735 -1.0 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_3892 -0.9 -2.2 conserved protein of unknown function compare
PP_5227 -0.9 -4.8 diaminopimelate decarboxylase compare
PP_5303 -0.9 -3.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -0.9 -1.5 pyrroline-5-carboxylate reductase compare
PP_1654 -0.9 -2.4 cysteine synthase B compare
PP_2000 -0.9 -1.3 amidophosphoribosyl transferase compare
PP_2568 -0.9 -1.5 Ring-cleaving dioxygenase compare
PP_2390 -0.8 -4.7 Transcriptional regulator, LysR family compare
PP_4696 -0.8 -2.8 Nitrogen regulation protein NR(I) compare
PP_3505 -0.8 -2.4 conserved protein of unknown function compare
PP_1022 -0.8 -2.9 glucose 6-phosphate-1-dehydrogenase compare
PP_t10 -0.8 -2.0 tRNA-Pro compare
PP_1783 -0.8 -0.7 dTDP-glucose pyrophosphorylase compare
PP_5331 -0.8 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_3376 -0.8 -3.4 putative phosphonate dehydrogenase compare
PP_1237 -0.8 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1632 -0.8 -1.7 conserved protein of unknown function compare
PP_1153 -0.7 -1.9 putative lipoprotein compare
PP_3198 -0.7 -1.7 Ferredoxin, 2Fe-2S compare
PP_0833 -0.7 -1.6 queuine tRNA-ribosyltransferase compare
PP_0195 -0.7 -1.9 conserved protein of unknown function compare
PP_5054 -0.7 -1.5 glutaredoxin 3 compare
PP_0306 -0.7 -2.6 conserved protein of unknown function compare
PP_5640 -0.7 -1.9 conserved protein of unknown function compare
PP_2307 -0.7 -1.5 conserved protein of unknown function compare
PP_1224 -0.7 -3.7 periplasmic subunit of the TolQRA transport system compare
PP_5313 -0.7 -1.1 DNA-binding protein HU-alpha compare
PP_3757 -0.7 -2.2 Chemotaxis protein CheY compare
PP_2631 -0.7 -1.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1468 -0.6 -1.4 Tyrosine recombinase XerD compare
PP_1629 -0.6 -1.6 Protein RecA compare
PP_4480 -0.6 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_4532 -0.6 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4880 -0.6 -3.2 exoribonuclease R compare
PP_5748 -0.6 -1.4 cytochrome c heme lyase subunit compare
PP_2306 -0.6 -1.7 conserved exported protein of unknown function compare
PP_1428 -0.6 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_5248 -0.6 -1.0 putative hydrolase compare
PP_1122 -0.6 -1.4 OmpA family protein compare
PP_4481 -0.6 -3.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1528 -0.6 -1.4 conserved protein of unknown function compare
PP_1999 -0.6 -1.5 membrane protein required for colicin V production compare
PP_4793 -0.6 -1.0 conserved protein of unknown function compare
PP_4268 -0.6 -0.9 nucleoid-associated broad specificity regulator compare
PP_1679 -0.6 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0164 -0.6 -3.3 conserved protein of unknown function compare
PP_4296 -0.6 -1.2 conserved exported protein of unknown function compare
PP_5241 -0.6 -1.7 DNA-binding response regulator, LuxR family compare
PP_2402 -0.6 -1.2 putative Sensor histidine kinase compare
PP_0003 -0.6 -2.0 16S RNA methyltransferase compare
PP_5471 -0.6 -1.1 putative response regulator receiver protein compare
PP_3164 -0.6 -1.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_3508 -0.5 -2.0 Protein CobW compare
PP_4695 -0.5 -4.3 Sensory box histidine kinase compare
PP_4830 -0.5 -2.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_3201 -0.5 -2.7 BNR domain protein compare
PP_4199 -0.5 -0.8 putative Lipoprotein compare
PP_5338 -0.5 -0.9 aspartate ammonia-lyase compare
PP_1020 -0.5 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_0610 -0.5 -1.7 conserved exported protein of unknown function compare
PP_3591 -0.5 -2.1 Delta 1-piperideine-2-carboxylate reductase compare
PP_0040 -0.5 -1.5 hypothetical protein compare
PP_0887 -0.5 -3.2 Sensor histidine kinase compare
PP_1834 -0.5 -2.4 conserved protein of unknown function compare
PP_1344 -0.5 -1.5 conserved protein of unknown function compare
PP_5028 -0.5 -1.8 proline iminopeptidase compare
PP_5035 -0.5 -2.9 Histidine utilization repressor compare
PP_3048 -0.5 -1.6 conserved protein of unknown function compare
PP_4419 -0.5 -1.4 transposase compare
PP_3205 -0.5 -2.5 Fumarylacetoacetate hydrolase family protein compare
PP_4482 -0.5 -2.5 Transcriptional regulator, AraC family compare
PP_3241 -0.5 -1.2 conserved exported protein of unknown function compare
PP_2137 -0.5 -0.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_0182 -0.5 -2.1 conserved protein of unknown function compare
PP_0122 -0.5 -1.3 conserved exported protein of unknown function compare
PP_0959 -0.5 -1.3 phospholipid ABC transporter compare
PP_4824 -0.5 -2.5 Sensor histidine kinase/response regulator compare
PP_1062 -0.5 -1.5 MutT/nudix family protein compare
PP_0980 -0.5 -2.3 Probable cytosol aminopeptidase compare
PP_3649 -0.5 -0.6 Transcriptional regulator, GntR family compare
PP_2900 -0.5 -1.4 conserved protein of unknown function compare
PP_5327 -0.5 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_4697 -0.5 -2.5 poly(A) polymerase compare
PP_5104 -0.5 -3.4 thiazole synthase compare
PP_0406 -0.5 -2.4 Nucleotidyltransferase family protein compare
PP_3888 -0.5 -2.0 conserved protein of unknown function compare
PP_5445 -0.5 -2.0 conserved protein of unknown function compare
PP_4364 -0.5 -1.7 putative Anti-sigma F factor antagonist compare
PP_3908 -0.5 -1.5 conserved protein of unknown function compare
PP_4829 -0.5 -1.6 putative precorrin-3B synthase compare
PP_1426 -0.5 -3.9 L-aspartate oxidase compare
PP_1788 -0.5 -1.7 conserved protein of unknown function compare
PP_5216 -0.5 -1.5 exopolyphosphatase compare
PP_1435 -0.5 -1.7 DNA repair protein RecO compare
PP_2433 -0.5 -1.2 conserved protein of unknown function compare
PP_2302 -0.5 -1.6 DNA-binding, ATP-dependent protease compare
PP_1186 -0.5 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_2820 -0.5 -1.5 HTH-type transcriptional regulator nfxB compare
PP_5233 -0.4 -3.2 ammonium transporter AmtB compare
PP_5337 -0.4 -1.5 LysR family transcriptional regulator compare
PP_5483 -0.4 -1.3 conserved protein of unknown function compare
PP_1217 -0.4 -1.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2121 -0.4 -1.1 putative Lipoprotein compare
PP_2854 -0.4 -2.2 conserved exported protein of unknown function compare
PP_5441 -0.4 -1.2 protein of unknown function compare
PP_3637 -0.4 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2764 -0.4 -1.7 FMN reductase (NADPH) compare
PP_1656 -0.4 -3.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_0432 -0.4 -2.0 N-acetyl-gamma-glutamyl-phosphate reductase 1 compare
PP_5638 -0.4 -2.6 conserved protein of unknown function compare
PP_4690 -0.4 -1.8 Rieske 2Fe-2S family protein compare
PP_4892 -0.4 -1.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Pipecolic Acid in Pseudomonas putida KT2440

For nitrogen source L-Pipecolic Acid across organisms