Experiment set28IT037 for Pseudomonas putida KT2440

Compare to:

Adenine hydrochloride hydrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -4.9 -12.5 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.9 -3.3 dihydroorotase-like protein compare
PP_0966 -4.8 -15.6 Histidinol dehydrogenase compare
PP_4723 -4.7 -24.8 Carbamoyl-phosphate synthase large chain compare
PP_3511 -4.7 -9.0 Branched-chain-amino-acid aminotransferase compare
PP_4364 -4.5 -7.6 putative Anti-sigma F factor antagonist compare
PP_1988 -4.3 -11.9 3-isopropylmalate dehydrogenase compare
PP_5076 -4.2 -23.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_5155 -4.2 -7.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5075 -4.1 -18.2 glutamate synthase (NADPH) beta subunit compare
PP_0083 -4.1 -6.3 tryptophan synthase beta chain compare
PP_1986 -4.1 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_1985 -4.1 -9.0 3-isopropylmalate dehydratase large subunit compare
PP_4909 -4.1 -10.9 phosphoserine phosphatase compare
PP_5289 -4.1 -6.4 Acetylglutamate kinase compare
PP_0082 -4.1 -7.8 tryptophan synthase alpha chain compare
PP_5014 -4.0 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4678 -4.0 -19.8 Ketol-acid reductoisomerase compare
PP_4890 -4.0 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -3.9 -14.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -3.8 -15.3 Argininosuccinate synthase compare
PP_0290 -3.8 -12.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5128 -3.8 -11.4 Dihydroxy-acid dehydratase compare
PP_4679 -3.8 -7.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.8 -19.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5097 -3.7 -15.5 homoserine O-acetyltransferase compare
PP_1022 -3.6 -7.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0164 -3.6 -13.4 conserved protein of unknown function compare
PP_0420 -3.6 -14.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -3.5 -9.7 Anthranilate phosphoribosyltransferase compare
PP_1079 -3.5 -10.9 Ornithine carbamoyltransferase compare
PP_0289 -3.5 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -3.4 -8.1 methionine biosynthesis protein MetW compare
PP_2001 -3.4 -11.6 O-succinylhomoserine sulfhydrylase compare
PP_1995 -3.4 -11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -3.3 -9.1 Indole-3-glycerol phosphate synthase compare
PP_0787 -3.3 -5.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0417 -3.3 -18.6 Anthranilate synthase component 1 compare
PP_0965 -3.3 -9.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -3.3 -10.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0339 -3.1 -6.3 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.1 -8.3 Nitrogen regulation protein NR(I) compare
PP_2168 -3.1 -10.7 Transaldolase compare
PP_0184 -3.0 -7.2 Argininosuccinate lyase compare
PP_3530 -3.0 -8.8 putative S-ureidoglycine aminohydrolase compare
PP_1231 -2.9 -6.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3999 -2.8 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -2.7 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0691 -2.6 -5.8 Glutamate 5-kinase compare
PP_5348 -2.6 -13.1 Transcriptional regulator, LysR family compare
PP_2370 -2.6 -3.6 conserved protein of unknown function compare
PP_4287 -2.6 -5.6 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase conserved
PP_2414 -2.5 -1.7 conserved exported protein of unknown function compare
PP_5347 -2.4 -13.8 pyruvate carboxylase subunit A compare
PP_2250 -2.4 -10.0 Transcriptional regulator, LysR family compare
PP_2371 -2.4 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_3821 -2.4 -15.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0127 -2.4 -9.5 Thiol:disulfide interchange protein compare
PP_2327 -2.4 -12.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1025 -2.4 -9.2 2-isopropylmalate synthase compare
PP_2251 -2.3 -10.2 conserved membrane protein of unknown function compare
PP_4799 -2.3 -1.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2388 -2.2 -6.6 Transporter, LysE family compare
PP_5015 -2.2 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5346 -2.2 -9.3 pyruvate carboxylase subunit B compare
PP_5303 -2.1 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2328 -2.0 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_1109 -1.7 -10.8 Transcriptional regulator, GntR family compare
PP_1110 -1.7 -3.8 serine acetyltransferase compare
PP_1994 -1.7 -2.7 tRNA pseudouridine (38-40)synthase compare
PP_4943 -1.7 -2.7 putative Glycosyl transferase compare
PP_0719 -1.6 -1.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4782 -1.6 -6.2 Phosphomethylpyrimidine kinase compare
PP_0291 -1.6 -2.5 conserved protein of unknown function compare
PP_2390 -1.6 -7.2 Transcriptional regulator, LysR family compare
PP_5048 -1.5 -8.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1111 -1.5 -6.5 putative Synthetase compare
PP_1654 -1.5 -3.5 cysteine synthase B compare
PP_0735 -1.5 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1362 -1.5 -4.0 pyruvate kinase II compare
PP_0362 -1.5 -9.9 Biotin synthase compare
PP_4004 -1.4 -2.8 DNA translocase FtsK compare
PP_4286 -1.4 -8.0 allantoinase conserved
PP_1912 -1.4 -5.2 Phosphate acyltransferase compare
PP_2378 -1.4 -1.5 Fe/S biogenesis protein NfuA compare
PP_4910 -1.4 -1.8 conserved protein of unknown function compare
PP_4879 -1.3 -3.0 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5227 -1.3 -8.0 diaminopimelate decarboxylase compare
PP_0809 -1.3 -8.1 disulfide bond formation protein B compare
PP_5322 -1.3 -6.5 putative metal ion transporter compare
PP_5350 -1.3 -5.4 Transcriptional regulator, RpiR family compare
PP_3926 -1.2 -2.8 short-chain dehydrogenase compare
PP_3790 -1.2 -7.4 diaminopimelate epimerase compare
PP_4984 -1.2 -8.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2000 -1.2 -1.7 amidophosphoribosyl transferase compare
PP_1493 -1.2 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1328 -1.2 -2.1 Protein MraZ compare
PP_3484 -1.1 -2.1 Response regulator receiver protein compare
PP_5104 -1.1 -7.3 thiazole synthase compare
PP_0401 -1.1 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_3417 -1.1 -5.5 D-gluconate transporter compare
PP_5508 -1.1 -1.7 conserved protein of unknown function compare
PP_2345 -1.0 -3.2 conserved exported protein of unknown function compare
PP_4058 -1.0 -6.7 1,4-alpha-glucan branching enzyme compare
PP_1632 -1.0 -2.1 conserved protein of unknown function compare
PP_3286 -1.0 -4.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1702 -0.9 -2.4 Recombination-associated protein RdgC compare
PP_5748 -0.9 -1.9 cytochrome c heme lyase subunit compare
PP_1589 -0.9 -6.2 uridylyltransferase compare
PP_1233 -0.9 -4.2 sulfurtransferase compare
PP_1426 -0.9 -6.8 L-aspartate oxidase compare
PP_0846 -0.9 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_4561 -0.9 -1.1 stress response protein compare
PP_4285 -0.9 -3.8 5-hydroxyisourate hydrolase compare
PP_1468 -0.9 -1.4 Tyrosine recombinase XerD compare
PP_4997 -0.9 -2.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5230 -0.8 -1.5 Tyrosine recombinase XerC compare
PP_0363 -0.8 -6.3 8-amino-7-oxononanoate synthase compare
PP_0566 -0.8 -1.6 translation-related factor compare
PP_1303 -0.8 -5.3 Sulfate adenylyltransferase subunit 2 compare
PP_4700 -0.8 -2.9 pantothenate synthetase compare
PP_3892 -0.8 -2.0 conserved protein of unknown function compare
PP_1764 -0.8 -3.3 Phosphoglycolate phosphatase 2 compare
PP_0364 -0.8 -5.5 pimeloyl-[acp] methyl ester esterase compare
PP_2322 -0.8 -6.4 Major outer membrane lipoprotein compare
PP_1348 -0.8 -4.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3241 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0834 -0.8 -2.0 Sec translocation complex subunit YajC compare
PP_5055 -0.8 -3.5 Sulfurtransferase compare
PP_2765 -0.8 -1.4 putative Sulfonate monooxygenase MsuD compare
PP_1009 -0.8 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3447 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_4829 -0.8 -2.3 putative precorrin-3B synthase compare
PP_5216 -0.8 -2.8 exopolyphosphatase compare
PP_0065 -0.8 -2.2 NAD-binding component of TrK potassium transporter compare
PP_4989 -0.7 -2.3 Protein PilJ compare
PP_5047 -0.7 -3.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3971 -0.7 -1.6 conserved protein of unknown function compare
PP_0377 -0.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_3946 -0.7 -1.6 HTH-type transcriptional repressor NicR compare
PP_4789 -0.7 -2.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2070 -0.7 -2.3 Transcriptional regulator, AraC family compare
PP_5248 -0.7 -1.4 putative hydrolase compare
PP_3409 -0.7 -2.0 putative Cobalamin biosynthesis protein cobE compare
PP_0365 -0.7 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2845 -0.7 -3.6 urease subunit alpha compare
PP_1293 -0.7 -1.3 molybdopterin synthase small subunit compare
PP_1366 -0.7 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_0366 -0.7 -3.0 dethiobiotin synthetase compare
PP_0914 -0.7 -4.5 GGDEF domain protein compare
PP_4917 -0.7 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5331 -0.7 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_1217 -0.7 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1826 -0.7 -1.3 Hydrolase, isochorismatase family compare
PP_1553 -0.6 -1.5 conserved protein of unknown function compare
PP_3244 -0.6 -2.6 Magnesium transporter, MgtC family compare
PP_0122 -0.6 -1.6 conserved exported protein of unknown function compare
PP_3384 -0.6 -2.4 gluconate 2-dehydrogenase gamma subunit compare
PP_4701 -0.6 -0.9 glucose-6-phosphate isomerase compare
PP_3098 -0.6 -1.0 conserved protein of unknown function compare
PP_3198 -0.6 -1.3 Ferredoxin, 2Fe-2S compare
PP_4695 -0.6 -4.7 Sensory box histidine kinase compare
PP_3829 -0.6 -2.3 Molybdenum transport system permease protein ModB compare
PP_5640 -0.6 -1.7 conserved protein of unknown function compare
PP_4126 -0.6 -0.8 NADH-quinone oxidoreductase subunit I compare
PP_4828 -0.6 -1.2 Precorrin-8X methylmutase compare
PP_2784 -0.6 -3.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4922 -0.6 -4.4 Phosphomethylpyrimidine synthase compare
PP_3789 -0.6 -4.2 putative Efflux transporter compare
PP_0833 -0.6 -2.0 queuine tRNA-ribosyltransferase compare
PP_4296 -0.6 -1.4 conserved exported protein of unknown function compare
PP_2118 -0.6 -1.8 conserved protein of unknown function compare
PP_4988 -0.6 -3.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2160 -0.6 -2.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2302 -0.6 -2.2 DNA-binding, ATP-dependent protease compare
PP_1734 -0.6 -0.9 Probable septum site-determining protein MinC compare
PP_1304 -0.6 -3.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0949 -0.6 -2.8 putative ATP-binding protein UPF0042 compare
PP_0393 -0.6 -0.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1190 -0.6 -2.3 conserved protein of unknown function compare
PP_1397 -0.6 -2.2 conserved protein of unknown function compare
PP_4874 -0.6 -0.6 50S ribosomal protein L9 compare
PP_5241 -0.5 -1.2 DNA-binding response regulator, LuxR family compare
PP_1367 -0.5 -2.9 formyltetrahydrofolate hydrolase compare
PP_2773 -0.5 -1.3 conserved protein of unknown function compare
PP_1020 -0.5 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_4363 -0.5 -4.0 Sensor histidine kinase/response regulator compare
PP_4699 -0.5 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5001 -0.5 -1.7 protease HslVU, ATPase component compare
PP_4880 -0.5 -3.0 exoribonuclease R compare
PP_1679 -0.5 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0406 -0.5 -2.5 Nucleotidyltransferase family protein compare
PP_2088 -0.5 -2.1 RNA polymerase sigma factor SigX compare
PP_1598 -0.5 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_2624 -0.5 -1.5 conserved protein of unknown function compare
PP_2324 -0.5 -3.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1326 -0.5 -1.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0002 -0.5 -3.3 probable chromosome partition protein compare
PP_5486 -0.5 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas putida KT2440

For nitrogen source Adenine hydrochloride hydrate across organisms