Experiment set28IT036 for Pseudomonas putida KT2440

Compare to:

Uracil nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0596 -6.7 -11.2 Omega-amino acid--pyruvate aminotransferase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0293 -5.4 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1988 -4.8 -10.7 3-isopropylmalate dehydrogenase compare
PP_0290 -4.7 -10.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5075 -4.7 -14.1 glutamate synthase (NADPH) beta subunit compare
PP_0292 -4.7 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -4.5 -11.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -4.5 -11.9 Transaldolase compare
PP_5076 -4.4 -22.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_4678 -4.4 -17.1 Ketol-acid reductoisomerase compare
PP_4890 -4.4 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_4058 -4.4 -14.4 1,4-alpha-glucan branching enzyme compare
PP_4909 -4.3 -10.8 phosphoserine phosphatase compare
PP_0691 -4.3 -7.0 Glutamate 5-kinase compare
PP_4680 -4.3 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.3 -5.8 tryptophan synthase alpha chain compare
PP_4724 -4.2 -13.3 Carbamoyl-phosphate synthase small chain compare
PP_5128 -4.2 -9.6 Dihydroxy-acid dehydratase compare
PP_5047 -4.2 -9.6 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4038 -4.1 -8.4 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_5014 -4.0 -3.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2001 -4.0 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_5098 -3.9 -9.6 methionine biosynthesis protein MetW compare
PP_3511 -3.9 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_0966 -3.8 -14.4 Histidinol dehydrogenase compare
PP_4723 -3.8 -21.9 Carbamoyl-phosphate synthase large chain compare
PP_0083 -3.7 -6.2 tryptophan synthase beta chain compare
PP_0967 -3.7 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0184 -3.7 -8.2 Argininosuccinate lyase compare
PP_1088 -3.7 -13.5 Argininosuccinate synthase compare
PP_5185 -3.6 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -3.5 -6.9 Indole-3-glycerol phosphate synthase compare
PP_0965 -3.5 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4679 -3.4 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -3.4 -17.3 Anthranilate synthase component 1 compare
PP_1985 -3.4 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_1079 -3.4 -8.6 Ornithine carbamoyltransferase compare
PP_5097 -3.4 -15.3 homoserine O-acetyltransferase compare
PP_2433 -3.4 -5.6 conserved protein of unknown function compare
PP_1995 -3.3 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5048 -3.2 -7.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1654 -3.1 -3.0 cysteine synthase B compare
PP_0420 -3.1 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4037 -3.1 -9.6 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_0421 -2.9 -6.7 Anthranilate phosphoribosyltransferase compare
PP_5015 -2.8 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2370 -2.7 -3.6 conserved protein of unknown function compare
PP_0846 -2.7 -2.7 DnaK-like molecular chaperone specific for IscU compare
PP_5155 -2.7 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -2.6 -6.8 Nitrogen regulation protein NR(I) compare
PP_4036 -2.6 -6.1 D-hydantoinase/dihydropyrimidinase compare
PP_5289 -2.5 -5.9 Acetylglutamate kinase compare
PP_2328 -2.5 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_3376 -2.4 -7.4 putative phosphonate dehydrogenase compare
PP_1589 -2.3 -10.4 uridylyltransferase compare
PP_2371 -2.3 -6.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1623 -2.2 -7.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_1025 -2.1 -8.0 2-isopropylmalate synthase compare
PP_0595 -2.1 -5.5 Transcriptional regulator, LysR family compare
PP_4799 -2.0 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0339 -2.0 -5.6 Pyruvate dehydrogenase E1 component compare
PP_5095 -1.9 -2.4 pyrroline-5-carboxylate reductase compare
PP_4004 -1.9 -2.2 DNA translocase FtsK compare
PP_5227 -1.8 -6.7 diaminopimelate decarboxylase compare
PP_5347 -1.7 -9.3 pyruvate carboxylase subunit A compare
PP_3999 -1.7 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2088 -1.7 -5.3 RNA polymerase sigma factor SigX compare
PP_0291 -1.7 -3.3 conserved protein of unknown function compare
PP_2000 -1.7 -1.2 amidophosphoribosyl transferase compare
PP_5348 -1.7 -7.9 Transcriptional regulator, LysR family compare
PP_5114 -1.7 -2.0 putative adenine methyltransferase compare
PP_2302 -1.6 -3.5 DNA-binding, ATP-dependent protease compare
PP_4060 -1.4 -11.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2378 -1.4 -1.0 Fe/S biogenesis protein NfuA compare
PP_0848 -1.4 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0164 -1.4 -7.0 conserved protein of unknown function compare
PP_4874 -1.4 -1.2 50S ribosomal protein L9 compare
PP_1217 -1.3 -2.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3052 -1.3 -1.7 conserved protein of unknown function compare
PP_5346 -1.3 -7.1 pyruvate carboxylase subunit B compare
PP_3519 -1.3 -1.6 putative Lipoprotein compare
PP_5303 -1.3 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1328 -1.3 -1.8 Protein MraZ compare
PP_0597 -1.2 -8.8 methylmalonate-semialdehyde dehydrogenase compare
PP_5233 -1.2 -6.9 ammonium transporter AmtB compare
PP_3946 -1.2 -2.0 HTH-type transcriptional repressor NicR compare
PP_3377 -1.2 -8.7 2-ketogluconate transporter, putative compare
PP_0735 -1.1 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_3380 -1.1 -2.9 2-ketogluconate utilization repressor compare
PP_4993 -1.1 -3.2 Glutathione synthetase compare
PP_5225 -1.1 -2.0 frataxin compare
PP_4561 -1.1 -1.2 stress response protein compare
PP_4532 -1.0 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0362 -1.0 -7.2 Biotin synthase compare
PP_1198 -1.0 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1231 -1.0 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2575 -1.0 -2.0 conserved exported protein of unknown function compare
PP_1679 -1.0 -3.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2720 -1.0 -1.8 conserved protein of unknown function compare
PP_4593 -1.0 -1.9 conserved protein of unknown function compare
PP_4804 -0.9 -1.8 RlpA-like lipoprotein compare
PP_3241 -0.9 -1.8 conserved exported protein of unknown function compare
PP_3637 -0.9 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4697 -0.9 -3.2 poly(A) polymerase compare
PP_1826 -0.9 -2.5 Hydrolase, isochorismatase family compare
PP_0002 -0.9 -5.2 probable chromosome partition protein compare
PP_1322 -0.9 -1.9 putative Lipoprotein compare
PP_3365 -0.9 -1.1 Acetolactate synthase compare
PP_0556 -0.8 -1.9 Acetoin catabolism protein compare
PP_0642 -0.8 -2.9 conserved membrane protein of unknown function compare
PP_1702 -0.8 -1.9 Recombination-associated protein RdgC compare
PP_1381 -0.8 -1.1 4-carboxymuconolactone decarboxylase compare
PP_4695 -0.8 -5.6 Sensory box histidine kinase compare
PP_4546 -0.8 -2.9 ATP-dependent helicase HrpA compare
PP_2160 -0.8 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5267 -0.8 -1.8 putative cytochrome c5 compare
PP_1055 -0.8 -2.0 Type II secretion pathway protein GspN compare
PP_5575 -0.8 -1.9 conserved protein of unknown function compare
PP_5322 -0.8 -4.1 putative metal ion transporter compare
PP_5090 -0.8 -0.9 putative cell division protein compare
PP_5000 -0.8 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_4782 -0.7 -3.3 Phosphomethylpyrimidine kinase compare
PP_1757 -0.7 -3.0 DNA-binding transcriptional dual regulator compare
PP_4329 -0.7 -2.2 FlhB domain protein compare
PP_5104 -0.7 -5.2 thiazole synthase compare
PP_3378 -0.7 -1.7 putative 2-ketogluconokinase compare
PP_0040 -0.7 -1.3 hypothetical protein compare
PP_1233 -0.7 -2.4 sulfurtransferase compare
PP_4503 -0.7 -2.5 DNA-binding response regulator compare
PP_1111 -0.7 -2.8 putative Synthetase compare
PP_2306 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4895 -0.7 -1.8 tRNA dimethylallyltransferase compare
PP_4098 -0.7 -1.2 UvrABC system protein C compare
PP_1605 -0.7 -2.0 Ribonuclease HII compare
PP_1109 -0.7 -5.6 Transcriptional regulator, GntR family compare
PP_2144 -0.7 -2.0 Transcriptional regulator, TetR family compare
PP_5007 -0.7 -2.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5055 -0.7 -2.8 Sulfurtransferase compare
PP_5093 -0.7 -0.7 twitching motility protein compare
PP_3770 -0.7 -1.7 conserved protein of unknown function compare
PP_2327 -0.7 -3.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5216 -0.7 -1.4 exopolyphosphatase compare
PP_2414 -0.7 -1.4 conserved exported protein of unknown function compare
PP_2402 -0.7 -1.0 putative Sensor histidine kinase compare
PP_3384 -0.7 -2.4 gluconate 2-dehydrogenase gamma subunit compare
PP_3239 -0.6 -2.0 putative cointegrate resolution protein T Tn4652 compare
PP_1664 -0.6 -1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_5507 -0.6 -1.9 protein of unknown function compare
PP_4364 -0.6 -2.6 putative Anti-sigma F factor antagonist compare
PP_4627 -0.6 -3.2 transcriptional regulator, LysR family compare
PP_3205 -0.6 -3.0 Fumarylacetoacetate hydrolase family protein compare
PP_0787 -0.6 -2.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5521 -0.6 -3.9 protein of unknown function compare
PP_1348 -0.6 -3.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1677 -0.6 -2.1 Adenosyl-cobyric acid synthase compare
PP_3597 -0.6 -2.4 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_0305 -0.6 -1.8 HTH-type transcriptional regulator CdhR compare
PP_5338 -0.6 -0.9 aspartate ammonia-lyase compare
PP_1456 -0.6 -3.0 conserved membrane protein of unknown function compare
PP_3443 -0.6 -4.1 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_4880 -0.6 -2.9 exoribonuclease R compare
PP_3758 -0.6 -2.8 Response regulator/sensor histidine kinase compare
PP_2784 -0.6 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5508 -0.6 -0.9 conserved protein of unknown function compare
PP_5145 -0.6 -5.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3824 -0.6 -2.1 conserved exported protein of unknown function compare
PP_5085 -0.6 -4.0 malic enzyme B compare
PP_4236 -0.6 -2.3 putative Thiol:disulfide interchange protein dsbE compare
PP_5483 -0.6 -1.2 conserved protein of unknown function compare
PP_0677 -0.6 -2.4 putative Lipoprotein compare
PP_2714 -0.6 -3.1 Sensor histidine kinase compare
PP_1215 -0.6 -0.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_5582 -0.6 -1.2 conserved protein of unknown function compare
PP_1428 -0.6 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_4997 -0.5 -1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0653 -0.5 -1.3 conserved protein of unknown function compare
PP_2883 -0.5 -1.6 conserved protein of unknown function compare
PP_2631 -0.5 -0.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0035 -0.5 -1.3 putative bactoprenol-linked glycose transferase compare
PP_5393 -0.5 -0.6 putative metal-binding chaperone compare
PP_2820 -0.5 -1.4 HTH-type transcriptional regulator nfxB compare
PP_1451 -0.5 -2.2 conserved exported protein of unknown function compare
PP_5427 -0.5 -2.6 conserved exported protein of unknown function compare
PP_4943 -0.5 -0.9 putative Glycosyl transferase compare
PP_5552 -0.5 -1.5 conserved protein of unknown function compare
PP_1143 -0.5 -2.6 3-hydroxyisobutyrate dehydrogenase family protein compare
PP_0878 -0.5 -2.6 dipeptide ABC transporter, binding subunit compare
PP_1455 -0.5 -1.8 conserved protein of unknown function compare
PP_2745 -0.5 -2.5 Universal stress protein family compare
PP_1304 -0.5 -3.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5327 -0.5 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_2061 -0.5 -2.2 conserved protein of unknown function compare
PP_1224 -0.5 -3.2 periplasmic subunit of the TolQRA transport system compare
PP_4311 -0.5 -2.7 putative D-amino acid dehydrogenase 2 small subunit compare
PP_5445 -0.5 -1.2 conserved protein of unknown function compare
PP_0301 -0.5 -2.2 betainyl-CoA thiolase compare
PP_2845 -0.5 -2.4 urease subunit alpha compare
PP_1442 -0.5 -2.0 conserved protein of unknown function compare
PP_1493 -0.5 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Uracil in Pseudomonas putida KT2440

For nitrogen source Uracil across organisms