Experiment set28IT035 for Pseudomonas putida KT2440

Compare to:

Uracil nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0596 -6.0 -14.6 Omega-amino acid--pyruvate aminotransferase compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -4.8 -10.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -4.7 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_4058 -4.6 -14.5 1,4-alpha-glucan branching enzyme compare
PP_4680 -4.6 -18.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.6 -5.4 tryptophan synthase alpha chain compare
PP_1988 -4.5 -9.9 3-isopropylmalate dehydrogenase compare
PP_4909 -4.4 -11.6 phosphoserine phosphatase compare
PP_5076 -4.4 -21.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_0289 -4.4 -10.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5075 -4.3 -15.1 glutamate synthase (NADPH) beta subunit compare
PP_3511 -4.3 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_0184 -4.3 -8.6 Argininosuccinate lyase compare
PP_4890 -4.3 -8.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5047 -4.2 -9.0 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0292 -4.1 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4679 -4.1 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -4.1 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1986 -4.0 -5.5 3-isopropylmalate dehydratase small subunit compare
PP_0422 -3.9 -10.0 Indole-3-glycerol phosphate synthase compare
PP_2168 -3.9 -12.5 Transaldolase compare
PP_0965 -3.9 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4724 -3.9 -13.3 Carbamoyl-phosphate synthase small chain compare
PP_1995 -3.9 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -3.8 -13.0 Histidinol dehydrogenase compare
PP_4678 -3.8 -15.4 Ketol-acid reductoisomerase compare
PP_0691 -3.7 -7.1 Glutamate 5-kinase compare
PP_4723 -3.7 -22.0 Carbamoyl-phosphate synthase large chain compare
PP_5098 -3.7 -10.1 methionine biosynthesis protein MetW compare
PP_0083 -3.6 -6.9 tryptophan synthase beta chain compare
PP_5014 -3.6 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5097 -3.6 -15.7 homoserine O-acetyltransferase compare
PP_5128 -3.5 -8.3 Dihydroxy-acid dehydratase compare
PP_5048 -3.4 -6.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5185 -3.4 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1088 -3.4 -14.0 Argininosuccinate synthase compare
PP_4037 -3.3 -12.6 NADP-dependent dihydropyrimidine dehydrogenase subunit compare
PP_2001 -3.3 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_0417 -3.2 -18.2 Anthranilate synthase component 1 compare
PP_1079 -3.1 -8.8 Ornithine carbamoyltransferase compare
PP_5289 -3.1 -6.5 Acetylglutamate kinase compare
PP_0420 -3.1 -11.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4038 -3.0 -8.8 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_4036 -3.0 -5.8 D-hydantoinase/dihydropyrimidinase compare
PP_0421 -2.8 -7.9 Anthranilate phosphoribosyltransferase compare
PP_5095 -2.8 -2.6 pyrroline-5-carboxylate reductase compare
PP_1623 -2.6 -7.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5155 -2.4 -4.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5015 -2.4 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1589 -2.3 -11.6 uridylyltransferase compare
PP_1654 -2.3 -3.4 cysteine synthase B compare
PP_1216 -2.2 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2371 -2.2 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0595 -2.1 -7.3 Transcriptional regulator, LysR family compare
PP_0846 -2.1 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_1025 -2.1 -8.2 2-isopropylmalate synthase compare
PP_5227 -2.0 -7.2 diaminopimelate decarboxylase compare
PP_4799 -1.9 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2302 -1.9 -3.8 DNA-binding, ATP-dependent protease compare
PP_2328 -1.9 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_2088 -1.9 -4.5 RNA polymerase sigma factor SigX compare
PP_3376 -1.9 -5.4 putative phosphonate dehydrogenase compare
PP_4696 -1.8 -6.2 Nitrogen regulation protein NR(I) compare
PP_2370 -1.8 -3.0 conserved protein of unknown function compare
PP_0339 -1.8 -5.4 Pyruvate dehydrogenase E1 component compare
PP_5090 -1.7 -2.5 putative cell division protein compare
PP_0735 -1.7 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5346 -1.7 -8.3 pyruvate carboxylase subunit B compare
PP_5347 -1.6 -8.9 pyruvate carboxylase subunit A compare
PP_5303 -1.6 -4.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4060 -1.6 -11.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0848 -1.5 -3.3 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4895 -1.5 -3.5 tRNA dimethylallyltransferase compare
PP_5267 -1.4 -2.3 putative cytochrome c5 compare
PP_2433 -1.4 -2.6 conserved protein of unknown function compare
PP_3378 -1.4 -2.9 putative 2-ketogluconokinase compare
PP_5233 -1.4 -7.5 ammonium transporter AmtB compare
PP_0164 -1.4 -8.0 conserved protein of unknown function compare
PP_1702 -1.3 -2.6 Recombination-associated protein RdgC compare
PP_1468 -1.3 -2.0 Tyrosine recombinase XerD compare
PP_4004 -1.3 -2.2 DNA translocase FtsK compare
PP_4199 -1.2 -1.3 putative Lipoprotein compare
PP_3999 -1.2 -4.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3377 -1.2 -9.0 2-ketogluconate transporter, putative compare
PP_0597 -1.2 -8.9 methylmalonate-semialdehyde dehydrogenase compare
PP_3380 -1.1 -3.6 2-ketogluconate utilization repressor compare
PP_5322 -1.1 -5.3 putative metal ion transporter compare
PP_5348 -1.1 -6.5 Transcriptional regulator, LysR family compare
PP_0787 -1.1 -4.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0291 -1.1 -2.2 conserved protein of unknown function compare
PP_1237 -1.1 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2378 -1.0 -1.0 Fe/S biogenesis protein NfuA compare
PP_1110 -1.0 -2.9 serine acetyltransferase compare
PP_1198 -1.0 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4109 -1.0 -2.8 conserved protein of unknown function compare
PP_5100 -1.0 -1.9 dITP/XTP pyrophosphatase compare
PP_1328 -1.0 -1.5 Protein MraZ compare
PP_2820 -1.0 -3.5 HTH-type transcriptional regulator nfxB compare
PP_0362 -0.9 -7.2 Biotin synthase compare
PP_4910 -0.9 -1.4 conserved protein of unknown function compare
PP_0002 -0.9 -5.5 probable chromosome partition protein compare
PP_2000 -0.9 -1.2 amidophosphoribosyl transferase compare
PP_5104 -0.9 -5.6 thiazole synthase compare
PP_1022 -0.9 -3.7 glucose 6-phosphate-1-dehydrogenase compare
PP_5225 -0.9 -1.7 frataxin compare
PP_4952 -0.9 -1.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0852 -0.9 -2.6 Transcriptional regulator, Cro/CI family compare
PP_0319 -0.9 -2.0 conserved protein of unknown function compare
PP_2631 -0.9 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3245 -0.8 -1.6 conserved protein of unknown function compare
PP_5571 -0.8 -1.3 conserved protein of unknown function compare
PP_t49 -0.8 -2.5 tRNA-Met compare
PP_0948 -0.8 -1.5 Phosphocarrier protein HPr compare
PP_5552 -0.8 -2.6 conserved protein of unknown function compare
PP_2203 -0.8 -2.1 conserved protein of unknown function compare
PP_2793 -0.8 -1.9 Acyl-CoA dehydrogenase family protein compare
PP_1826 -0.8 -1.9 Hydrolase, isochorismatase family compare
PP_1217 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1757 -0.8 -3.3 DNA-binding transcriptional dual regulator compare
PP_4695 -0.8 -5.4 Sensory box histidine kinase compare
PP_0719 -0.8 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3926 -0.8 -1.7 short-chain dehydrogenase compare
PP_3938 -0.8 -1.5 conserved protein of unknown function compare
PP_5507 -0.8 -1.8 protein of unknown function compare
PP_1783 -0.8 -0.7 dTDP-glucose pyrophosphorylase compare
PP_3758 -0.8 -3.8 Response regulator/sensor histidine kinase compare
PP_4364 -0.8 -3.1 putative Anti-sigma F factor antagonist compare
PP_2029 -0.8 -1.7 von Willebrand factor type A domain protein compare
PP_1326 -0.8 -2.0 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0963 -0.8 -1.7 putative BolA family protein compare
PP_2857 -0.7 -1.3 conserved exported protein of unknown function compare
PP_5230 -0.7 -2.1 Tyrosine recombinase XerC compare
PP_2144 -0.7 -2.3 Transcriptional regulator, TetR family compare
PP_0273 -0.7 -3.1 conserved protein of unknown function compare
PP_1322 -0.7 -1.6 putative Lipoprotein compare
PP_5114 -0.7 -1.3 putative adenine methyltransferase compare
PP_3447 -0.7 -1.0 conserved membrane protein of unknown function compare
PP_2327 -0.7 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1813 -0.7 -2.0 ComEA-related protein compare
PP_4005 -0.7 -2.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_1231 -0.7 -2.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0775 -0.7 -1.7 conserved protein of unknown function compare
PP_1938 -0.7 -1.6 conserved protein of unknown function compare
PP_1664 -0.7 -2.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_2307 -0.7 -1.3 conserved protein of unknown function compare
PP_3241 -0.7 -1.4 conserved exported protein of unknown function compare
PP_3286 -0.7 -2.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1041 -0.7 -1.7 twin arginine protein export complex subunit compare
PP_3035 -0.7 -1.4 conserved protein of unknown function compare
PP_2747 -0.7 -1.5 conserved protein of unknown function compare
PP_4296 -0.6 -1.2 conserved exported protein of unknown function compare
PP_2568 -0.6 -1.1 Ring-cleaving dioxygenase compare
PP_5546 -0.6 -2.0 conserved protein of unknown function compare
PP_3649 -0.6 -0.6 Transcriptional regulator, GntR family compare
PP_2880 -0.6 -1.7 Transcriptional regulator, TetR family compare
PP_1366 -0.6 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_1344 -0.6 -1.1 conserved protein of unknown function compare
PP_5508 -0.6 -1.0 conserved protein of unknown function compare
PP_1109 -0.6 -5.3 Transcriptional regulator, GntR family compare
PP_4880 -0.6 -3.1 exoribonuclease R compare
PP_5604 -0.6 -1.4 putative subtilisin-like serine protease compare
PP_2550 -0.6 -1.7 putative transcriptional regulatory protein compare
PP_1233 -0.6 -2.5 sulfurtransferase compare
PP_5465 -0.6 -3.2 conserved protein of unknown function compare
PP_0401 -0.6 -0.8 Ribosomal RNA small subunit methyltransferase A compare
PP_2060 -0.6 -1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_5145 -0.6 -5.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5338 -0.6 -0.9 aspartate ammonia-lyase compare
PP_1994 -0.6 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_2415 -0.6 -3.2 putative acetyltransferase, GNAT family compare
PP_2290 -0.6 -2.5 conserved protein of unknown function compare
PP_4726 -0.6 -2.1 Chaperone protein DnaJ compare
PP_4406 -0.6 -1.8 conserved protein of unknown function compare
PP_4993 -0.6 -1.9 Glutathione synthetase compare
PP_1153 -0.6 -2.0 putative lipoprotein compare
PP_1860 -0.6 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
PP_1739 -0.6 -1.6 conserved membrane protein of unknown function compare
PP_3243 -0.6 -1.4 Acetyltransferase, GNAT family compare
PP_1734 -0.6 -0.6 Probable septum site-determining protein MinC compare
PP_1236 -0.6 -2.8 putative Glycine cleavage system transcriptional repressor compare
PP_4902 -0.6 -1.9 Oligoribonuclease compare
PP_3443 -0.6 -4.0 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0643 -0.6 -1.4 protein of unknown function compare
PP_0040 -0.5 -1.8 hypothetical protein compare
PP_2475 -0.5 -2.0 Transcriptional regulator, TetR family compare
PP_4804 -0.5 -1.3 RlpA-like lipoprotein compare
PP_4879 -0.5 -1.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3757 -0.5 -1.7 Chemotaxis protein CheY compare
PP_5723 -0.5 -2.4 protein of unknown function compare
PP_3770 -0.5 -2.2 conserved protein of unknown function compare
PP_5295 -0.5 -0.8 conserved protein of unknown function compare
PP_1523 -0.5 -2.1 conserved protein of unknown function compare
PP_1068 -0.5 -2.5 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_4981 -0.5 -1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_5085 -0.5 -3.5 malic enzyme B compare
PP_2402 -0.5 -1.1 putative Sensor histidine kinase compare
PP_1677 -0.5 -2.2 Adenosyl-cobyric acid synthase compare
PP_5216 -0.5 -1.1 exopolyphosphatase compare
PP_3833 -0.5 -2.0 Response regulator compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Uracil in Pseudomonas putida KT2440

For nitrogen source Uracil across organisms