Experiment set28IT034 for Pseudomonas putida KT2440

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.7 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -5.4 -24.4 Carbamoyl-phosphate synthase large chain compare
PP_1988 -5.2 -11.1 3-isopropylmalate dehydrogenase compare
PP_4724 -5.1 -15.3 Carbamoyl-phosphate synthase small chain compare
PP_1088 -5.0 -13.7 Argininosuccinate synthase compare
PP_4909 -4.8 -11.2 phosphoserine phosphatase compare
PP_0184 -4.7 -7.8 Argininosuccinate lyase compare
PP_4678 -4.7 -19.2 Ketol-acid reductoisomerase compare
PP_0082 -4.6 -5.5 tryptophan synthase alpha chain compare
PP_5185 -4.6 -8.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -4.6 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_1985 -4.5 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0966 -4.5 -12.7 Histidinol dehydrogenase compare
PP_0292 -4.3 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -4.2 -18.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -4.2 -8.6 Ornithine carbamoyltransferase compare
PP_0417 -4.1 -19.2 Anthranilate synthase component 1 compare
PP_0421 -4.1 -8.4 Anthranilate phosphoribosyltransferase compare
PP_0420 -4.0 -14.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -4.0 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_0083 -4.0 -6.1 tryptophan synthase beta chain compare
PP_5128 -4.0 -9.5 Dihydroxy-acid dehydratase compare
PP_0422 -3.9 -9.1 Indole-3-glycerol phosphate synthase compare
PP_0289 -3.9 -10.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0967 -3.9 -14.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0965 -3.8 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -3.8 -16.9 homoserine O-acetyltransferase compare
PP_4999 -3.8 -3.6 dihydroorotase-like protein compare
PP_1912 -3.8 -8.3 Phosphate acyltransferase compare
PP_1995 -3.8 -11.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2371 -3.7 -7.1 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -3.7 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -3.6 -5.6 Acetylglutamate kinase compare
PP_2001 -3.6 -12.4 O-succinylhomoserine sulfhydrylase compare
PP_0787 -3.3 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -3.3 -8.5 methionine biosynthesis protein MetW compare
PP_0291 -3.2 -4.3 conserved protein of unknown function compare
PP_5155 -3.2 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5014 -3.1 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_2328 -3.1 -8.1 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -3.0 -3.5 conserved protein of unknown function compare
PP_2327 -3.0 -12.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -3.0 -3.8 serine acetyltransferase compare
PP_4890 -2.9 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_2388 -2.9 -7.2 Transporter, LysE family compare
PP_3999 -2.9 -4.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2402 -2.7 -3.1 putative Sensor histidine kinase compare
PP_0691 -2.6 -6.2 Glutamate 5-kinase compare
PP_1025 -2.5 -8.4 2-isopropylmalate synthase compare
PP_5095 -2.4 -2.8 pyrroline-5-carboxylate reductase compare
PP_5015 -2.3 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2390 -2.3 -9.8 Transcriptional regulator, LysR family compare
PP_1231 -2.3 -6.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1216 -2.3 -2.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0339 -2.2 -5.8 Pyruvate dehydrogenase E1 component compare
PP_3598 -2.1 -11.4 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) compare
PP_4799 -2.1 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1109 -2.0 -11.3 Transcriptional regulator, GntR family compare
PP_5114 -1.9 -2.3 putative adenine methyltransferase compare
PP_1664 -1.8 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_2448 -1.7 -10.8 Gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
PP_4895 -1.7 -3.3 tRNA dimethylallyltransferase compare
PP_0214 -1.7 -6.7 4-aminobutyrate aminotransferase compare
PP_1994 -1.7 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_1111 -1.6 -6.9 putative Synthetase compare
PP_4199 -1.5 -1.5 putative Lipoprotein compare
PP_5303 -1.5 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4696 -1.5 -5.4 Nitrogen regulation protein NR(I) compare
PP_5076 -1.4 -11.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_5184 -1.3 -6.7 glutamylpolyamine synthetase conserved
PP_5093 -1.3 -1.5 twitching motility protein compare
PP_5075 -1.3 -8.7 glutamate synthase (NADPH) beta subunit compare
PP_5278 -1.3 -4.1 4-guanidinobutyraldehyde dehydrogenase conserved
PP_1233 -1.3 -4.9 sulfurtransferase compare
PP_1426 -1.3 -9.2 L-aspartate oxidase compare
PP_2000 -1.3 -1.4 amidophosphoribosyl transferase compare
PP_4782 -1.3 -3.6 Phosphomethylpyrimidine kinase compare
PP_5227 -1.2 -6.6 diaminopimelate decarboxylase compare
PP_1022 -1.2 -4.5 glucose 6-phosphate-1-dehydrogenase compare
PP_4045 -1.1 -3.3 conserved protein of unknown function compare
PP_0393 -1.1 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0719 -1.1 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1654 -1.0 -2.5 cysteine synthase B compare
PP_5104 -1.0 -4.8 thiazole synthase compare
PP_5337 -1.0 -2.8 LysR family transcriptional regulator compare
PP_1293 -1.0 -1.3 molybdopterin synthase small subunit compare
PP_5350 -1.0 -4.4 Transcriptional regulator, RpiR family compare
PP_3926 -0.9 -2.1 short-chain dehydrogenase compare
PP_4910 -0.9 -1.4 conserved protein of unknown function compare
PP_4700 -0.9 -3.1 pantothenate synthetase compare
PP_1702 -0.9 -2.0 Recombination-associated protein RdgC compare
PP_1348 -0.8 -4.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4789 -0.8 -4.2 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0127 -0.8 -5.1 Thiol:disulfide interchange protein compare
PP_4136 -0.8 -1.1 Transcriptional regulator, LuxR family compare
PP_3312 -0.8 -1.7 putative Heat shock protein compare
PP_3417 -0.8 -3.6 D-gluconate transporter compare
PP_5230 -0.8 -2.3 Tyrosine recombinase XerC compare
PP_3790 -0.8 -4.5 diaminopimelate epimerase compare
PP_1217 -0.8 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3376 -0.8 -4.0 putative phosphonate dehydrogenase compare
PP_0512 -0.8 -1.8 hypothetical protein compare
PP_4364 -0.8 -3.0 putative Anti-sigma F factor antagonist compare
PP_5007 -0.8 -2.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1605 -0.8 -2.3 Ribonuclease HII compare
PP_2153 -0.8 -2.5 conserved protein of unknown function compare
PP_3757 -0.8 -2.7 Chemotaxis protein CheY compare
PP_5216 -0.8 -3.1 exopolyphosphatase compare
PP_2389 -0.8 -2.1 conserved protein of unknown function compare
PP_4922 -0.8 -5.2 Phosphomethylpyrimidine synthase compare
PP_1528 -0.8 -1.8 conserved protein of unknown function compare
PP_4004 -0.7 -1.6 DNA translocase FtsK compare
PP_1826 -0.7 -2.2 Hydrolase, isochorismatase family compare
PP_0809 -0.7 -5.0 disulfide bond formation protein B compare
PP_0319 -0.7 -1.3 conserved protein of unknown function compare
PP_0833 -0.7 -2.0 queuine tRNA-ribosyltransferase compare
PP_4593 -0.7 -1.6 conserved protein of unknown function compare
PP_4362 -0.7 -2.3 conserved protein of unknown function compare
PP_4917 -0.7 -1.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3409 -0.7 -1.5 putative Cobalamin biosynthesis protein cobE compare
PP_3506 -0.7 -2.4 Magnesium chelatase, subunit ChII compare
PP_2253 -0.7 -1.8 Transcriptional regulator, GntR family compare
PP_4546 -0.7 -2.7 ATP-dependent helicase HrpA compare
PP_4268 -0.7 -1.2 nucleoid-associated broad specificity regulator compare
PP_3590 -0.7 -3.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1589 -0.7 -4.2 uridylyltransferase compare
PP_1362 -0.7 -2.3 pyruvate kinase II compare
PP_0003 -0.7 -2.8 16S RNA methyltransferase compare
PP_2168 -0.7 -4.4 Transaldolase compare
PP_4824 -0.7 -3.1 Sensor histidine kinase/response regulator compare
PP_2677 -0.7 -2.0 conserved exported protein of unknown function compare
PP_5248 -0.7 -1.0 putative hydrolase compare
PP_1208 -0.7 -0.8 conserved protein of unknown function, SlyX family compare
PP_3434 -0.7 -1.8 conserved protein of unknown function compare
PP_5048 -0.7 -3.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1683 -0.6 -1.5 Transcriptional regulator, MarR family compare
PP_5619 -0.6 -2.5 protein of unknown function compare
PP_3036 -0.6 -2.8 conserved protein of unknown function compare
PP_5322 -0.6 -3.5 putative metal ion transporter compare
PP_t57 -0.6 -2.2 tRNA-Arg compare
PP_5035 -0.6 -3.3 Histidine utilization repressor compare
PP_5491 -0.6 -1.6 conserved protein of unknown function with SEC-C motif domain compare
PP_5507 -0.6 -2.5 protein of unknown function compare
PP_1435 -0.6 -2.8 DNA repair protein RecO compare
PP_1493 -0.6 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2306 -0.6 -1.5 conserved exported protein of unknown function compare
PP_0827 -0.6 -2.3 putative phosphonate transport system permease protein PtxC compare
PP_3508 -0.6 -2.1 Protein CobW compare
PP_4989 -0.6 -2.0 Protein PilJ compare
PP_4695 -0.6 -4.5 Sensory box histidine kinase compare
PP_3789 -0.6 -4.2 putative Efflux transporter compare
PP_4223 -0.6 -1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4556 -0.6 -1.9 conserved protein of unknown function compare
PP_4126 -0.6 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_1632 -0.6 -1.2 conserved protein of unknown function compare
PP_0855 -0.6 -1.6 conserved protein of unknown function compare
PP_2907 -0.6 -1.7 DNA-binding response regulator compare
PP_1428 -0.6 -0.4 Sigma factor AlgU negative regulatory protein compare
PP_2929 -0.6 -4.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5628 -0.6 -1.1 conserved protein of unknown function compare
PP_3833 -0.6 -3.1 Response regulator compare
PP_4707 -0.6 -1.9 OsmY-related protein compare
PP_4879 -0.6 -1.9 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5704 -0.6 -2.6 conserved protein of unknown function compare
PP_1131 -0.6 -2.6 outer membrane lipoprotein compare
PP_0362 -0.6 -3.9 Biotin synthase compare
PP_5486 -0.6 -1.3 conserved protein of unknown function compare
PP_5453 -0.6 -1.2 conserved protein of unknown function compare
PP_4814 -0.6 -2.0 ATP-dependent protease La domain protein compare
PP_1055 -0.5 -1.5 Type II secretion pathway protein GspN compare
PP_4925 -0.5 -1.8 conserved protein of unknown function compare
PP_5441 -0.5 -2.0 protein of unknown function compare
PP_4804 -0.5 -1.4 RlpA-like lipoprotein compare
PP_5168 -0.5 -1.6 sulfate/thiosulfate import ATP-binding protein compare
PP_4342 -0.5 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_0757 -0.5 -2.7 conserved protein of unknown function compare
PP_4424 -0.5 -1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0888 -0.5 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_2928 -0.5 -3.9 Saccharopine dehydrogenase compare
PP_2169 -0.5 -3.0 tRNA-dihydrouridine synthase A compare
PP_2181 -0.5 -3.0 Transcriptional regulator, Cro/CI family compare
PP_3647 -0.5 -2.2 putative Oxidoreductase compare
PP_3081 -0.5 -1.6 conserved protein of unknown function compare
PP_2725 -0.5 -1.5 Protease PfpI compare
PP_0119 -0.5 -2.1 putative zinc uptake regulation protein ZUR compare
PP_2762 -0.5 -2.9 acyl-CoA dehydrogenase/oxidase family protein compare
PP_4829 -0.5 -2.0 putative precorrin-3B synthase compare
PP_5017 -0.5 -0.7 Sec-independent protein translocase protein TatB compare
PP_1097 -0.5 -0.9 Methionine--tRNA ligase compare
PP_5348 -0.5 -3.2 Transcriptional regulator, LysR family compare
PP_4504 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0080 -0.5 -2.2 conserved protein of unknown function compare
PP_0164 -0.5 -3.2 conserved protein of unknown function compare
PP_4897 -0.5 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PP_4988 -0.5 -2.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2646 -0.5 -2.3 conserved protein of unknown function compare
PP_5659 -0.5 -2.1 protein of unknown function compare
PP_0949 -0.5 -2.2 putative ATP-binding protein UPF0042 compare
PP_1326 -0.5 -1.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas putida KT2440

For nitrogen source Putrescine Dihydrochloride across organisms