Experiment set28IT032 for Pseudomonas putida KT2440

Compare to:

Cadaverine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0290 -6.0 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0293 -5.5 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4680 -5.3 -17.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -5.2 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -5.2 -10.6 phosphoserine phosphatase compare
PP_1088 -5.2 -13.8 Argininosuccinate synthase compare
PP_1988 -5.1 -10.2 3-isopropylmalate dehydrogenase compare
PP_0289 -5.0 -10.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0184 -5.0 -6.9 Argininosuccinate lyase compare
PP_4723 -5.0 -20.4 Carbamoyl-phosphate synthase large chain compare
PP_0966 -4.9 -14.8 Histidinol dehydrogenase compare
PP_0292 -4.9 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -4.8 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -4.8 -14.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -4.8 -19.0 Ketol-acid reductoisomerase compare
PP_1079 -4.7 -9.3 Ornithine carbamoyltransferase compare
PP_0082 -4.7 -5.5 tryptophan synthase alpha chain compare
PP_1985 -4.6 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_0420 -4.6 -15.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -4.6 -8.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -4.6 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_0691 -4.6 -7.6 Glutamate 5-kinase compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_3511 -4.4 -9.6 Branched-chain-amino-acid aminotransferase compare
PP_0965 -4.4 -12.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -4.3 -5.9 tryptophan synthase beta chain compare
PP_5014 -4.3 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_4890 -4.3 -7.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0417 -4.2 -19.7 Anthranilate synthase component 1 compare
PP_5015 -4.2 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4724 -4.2 -8.7 Carbamoyl-phosphate synthase small chain compare
PP_5128 -4.1 -8.5 Dihydroxy-acid dehydratase compare
PP_0422 -4.0 -6.7 Indole-3-glycerol phosphate synthase compare
PP_5098 -4.0 -10.5 methionine biosynthesis protein MetW compare
PP_0421 -3.8 -6.8 Anthranilate phosphoribosyltransferase compare
PP_2001 -3.8 -10.9 O-succinylhomoserine sulfhydrylase compare
PP_0787 -3.6 -6.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5289 -3.5 -5.1 Acetylglutamate kinase compare
PP_5097 -3.5 -15.0 homoserine O-acetyltransferase compare
PP_2371 -3.4 -7.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -3.4 -8.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5155 -3.3 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5278 -3.1 -8.1 4-guanidinobutyraldehyde dehydrogenase compare
PP_2168 -3.0 -12.3 Transaldolase compare
PP_4058 -2.9 -15.2 1,4-alpha-glucan branching enzyme compare
PP_2370 -2.9 -3.9 conserved protein of unknown function compare
PP_5177 -2.9 -10.3 spermidine/putrescine ABC transporter - permease subunit compare
PP_5179 -2.8 -10.3 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_1109 -2.7 -13.0 Transcriptional regulator, GntR family compare
PP_5178 -2.7 -12.6 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_1025 -2.7 -9.8 2-isopropylmalate synthase compare
PP_4696 -2.6 -7.1 Nitrogen regulation protein NR(I) compare
PP_5076 -2.5 -16.3 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -2.4 -12.6 glutamate synthase (NADPH) beta subunit compare
PP_5048 -2.3 -6.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5181 -2.3 -14.5 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_2328 -2.3 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_1111 -2.2 -6.3 putative Synthetase compare
PP_2327 -2.2 -8.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1215 -2.1 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1110 -2.1 -2.1 serine acetyltransferase compare
PP_3999 -2.1 -5.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5047 -2.0 -5.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0719 -1.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4874 -1.9 -1.2 50S ribosomal protein L9 compare
PP_1664 -1.8 -4.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1589 -1.8 -8.8 uridylyltransferase compare
PP_1912 -1.8 -5.8 Phosphate acyltransferase compare
PP_5095 -1.7 -2.1 pyrroline-5-carboxylate reductase compare
PP_4799 -1.7 -1.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0630 -1.6 -1.8 DNA gyrase inhibitor YacG compare
PP_4895 -1.6 -3.6 tRNA dimethylallyltransferase compare
PP_1022 -1.6 -5.6 glucose 6-phosphate-1-dehydrogenase compare
PP_3790 -1.5 -8.9 diaminopimelate epimerase compare
PP_2388 -1.5 -5.7 Transporter, LysE family compare
PP_0214 -1.5 -6.3 4-aminobutyrate aminotransferase compare
PP_2000 -1.5 -1.7 amidophosphoribosyl transferase compare
PP_0291 -1.5 -1.6 conserved protein of unknown function compare
PP_2307 -1.4 -2.3 conserved protein of unknown function compare
PP_1216 -1.4 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0957 -1.4 -2.8 D-arabinose 5-phosphate isomerase compare
PP_0339 -1.3 -5.3 Pyruvate dehydrogenase E1 component compare
PP_4943 -1.3 -2.5 putative Glycosyl transferase compare
PP_2177 -1.3 -3.6 putative transcriptional regulator compare
PP_4593 -1.3 -2.3 conserved protein of unknown function compare
PP_2180 -1.2 -8.0 polyamine:pyruvate transaminase compare
PP_5303 -1.2 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1233 -1.2 -4.7 sulfurtransferase compare
PP_4782 -1.2 -3.9 Phosphomethylpyrimidine kinase compare
PP_0833 -1.2 -1.8 queuine tRNA-ribosyltransferase compare
PP_5486 -1.1 -2.3 conserved protein of unknown function compare
PP_5104 -1.1 -7.6 thiazole synthase compare
PP_4004 -1.1 -2.0 DNA translocase FtsK compare
PP_5182 -1.1 -4.2 polyamine:pyruvate transaminase compare
PP_4891 -1.0 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5347 -1.0 -6.8 pyruvate carboxylase subunit A compare
PP_1004 -1.0 -2.3 conserved protein of unknown function compare
PP_2390 -1.0 -5.2 Transcriptional regulator, LysR family compare
PP_5346 -1.0 -4.7 pyruvate carboxylase subunit B compare
PP_0653 -1.0 -2.1 conserved protein of unknown function compare
PP_4695 -0.9 -6.9 Sensory box histidine kinase compare
PP_3376 -0.9 -3.7 putative phosphonate dehydrogenase compare
PP_1654 -0.9 -2.2 cysteine synthase B compare
PP_1826 -0.9 -2.8 Hydrolase, isochorismatase family compare
PP_1217 -0.9 -2.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4681 -0.9 -2.2 conserved protein of unknown function compare
PP_0643 -0.9 -2.1 protein of unknown function compare
PP_2044 -0.9 -2.0 conserved inner membrane protein of unknown function compare
PP_2899 -0.9 -1.8 conserved exported protein of unknown function compare
PP_2029 -0.9 -2.5 von Willebrand factor type A domain protein compare
PP_3434 -0.9 -1.8 conserved protein of unknown function compare
PP_0319 -0.9 -2.1 conserved protein of unknown function compare
PP_5350 -0.9 -3.3 Transcriptional regulator, RpiR family compare
PP_0401 -0.8 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_1568 -0.8 -1.4 conserved protein of unknown function compare
PP_0949 -0.8 -3.6 putative ATP-binding protein UPF0042 compare
PP_4701 -0.8 -1.0 glucose-6-phosphate isomerase compare
PP_2910 -0.8 -4.8 L-2-hydroxyglutarate oxidase compare
PP_2088 -0.8 -2.2 RNA polymerase sigma factor SigX compare
PP_1410 -0.8 -0.9 conserved protein of unknown function compare
PP_2253 -0.8 -2.0 Transcriptional regulator, GntR family compare
PP_4964 -0.8 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_3892 -0.8 -1.9 conserved protein of unknown function compare
PP_0122 -0.8 -2.6 conserved exported protein of unknown function compare
PP_4828 -0.8 -1.3 Precorrin-8X methylmutase compare
PP_5227 -0.8 -4.8 diaminopimelate decarboxylase compare
PP_3840 -0.8 -1.7 conserved protein of unknown function compare
PP_3239 -0.8 -2.1 putative cointegrate resolution protein T Tn4652 compare
PP_1426 -0.8 -5.9 L-aspartate oxidase compare
PP_4793 -0.8 -1.7 conserved protein of unknown function compare
PP_5230 -0.8 -1.8 Tyrosine recombinase XerC compare
PP_5456 -0.8 -1.1 conserved protein of unknown function compare
PP_4379 -0.7 -4.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0346 -0.7 -3.9 putative Heptose kinase WapQ compare
PP_2475 -0.7 -2.6 Transcriptional regulator, TetR family compare
PP_1346 -0.7 -3.8 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_2136 -0.7 -2.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2336 -0.7 -2.3 aconitate hydratase 1 compare
PP_1528 -0.7 -1.9 conserved protein of unknown function compare
PP_3776 -0.7 -4.8 putative permease (RarD protein) compare
PP_4480 -0.7 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_5180 -0.7 -2.6 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_2340 -0.7 -2.6 conserved protein of unknown function compare
PP_0711 -0.7 -2.4 putative hydrolase compare
PP_5045 -0.7 -2.6 tRNA sulfurtransferase compare
PP_4875 -0.7 -3.4 conserved membrane protein of unknown function compare
PP_4910 -0.7 -1.2 conserved protein of unknown function compare
PP_0513 -0.7 -1.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4739 -0.7 -2.3 conserved protein of unknown function compare
PP_2345 -0.7 -1.9 conserved exported protein of unknown function compare
PP_3102 -0.7 -2.6 conserved protein of unknown function compare
PP_4804 -0.7 -1.5 RlpA-like lipoprotein compare
PP_5183 -0.7 -2.5 glutamylpolyamine synthetase compare
PP_1468 -0.7 -1.4 Tyrosine recombinase XerD compare
PP_0846 -0.7 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_2378 -0.7 -0.9 Fe/S biogenesis protein NfuA compare
PP_5322 -0.6 -3.2 putative metal ion transporter compare
PP_4913 -0.6 -2.8 conserved protein of unknown function compare
PP_3946 -0.6 -1.3 HTH-type transcriptional repressor NicR compare
PP_0607 -0.6 -1.9 putative Type IV pili biogenesis protein FimT compare
PP_1702 -0.6 -1.6 Recombination-associated protein RdgC compare
PP_1293 -0.6 -0.8 molybdopterin synthase small subunit compare
PP_4531 -0.6 -2.4 conserved exported protein of unknown function compare
PP_4204 -0.6 -2.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3770 -0.6 -1.9 conserved protein of unknown function compare
PP_2148 -0.6 -4.7 transcription-repair coupling factor compare
PP_5644 -0.6 -1.8 conserved membrane protein of unknown function compare
PP_5519 -0.6 -1.8 conserved protein of unknown function of phage origin compare
PP_5575 -0.6 -1.7 conserved protein of unknown function compare
PP_4138 -0.6 -2.2 Chromate reductase compare
PP_4789 -0.6 -2.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2858 -0.6 -1.8 conserved exported protein of unknown function compare
PP_2181 -0.6 -2.8 Transcriptional regulator, Cro/CI family compare
PP_3244 -0.6 -3.3 Magnesium transporter, MgtC family compare
PP_5331 -0.6 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_1734 -0.6 -0.6 Probable septum site-determining protein MinC compare
PP_5114 -0.6 -1.0 putative adenine methyltransferase compare
PP_4364 -0.6 -3.1 putative Anti-sigma F factor antagonist compare
PP_4848 -0.6 -1.8 Curved DNA-binding protein compare
PP_0250 -0.6 -1.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1062 -0.6 -1.6 MutT/nudix family protein compare
PP_5583 -0.6 -1.8 conserved protein of unknown function compare
PP_4917 -0.6 -1.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5652 -0.6 -1.6 conserved protein of unknown function, phage origin compare
PP_3378 -0.6 -0.9 putative 2-ketogluconokinase compare
PP_2784 -0.6 -1.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1764 -0.6 -3.2 Phosphoglycolate phosphatase 2 compare
PP_3380 -0.5 -2.2 2-ketogluconate utilization repressor compare
PP_1999 -0.5 -1.3 membrane protein required for colicin V production compare
PP_3789 -0.5 -3.1 putative Efflux transporter compare
PP_1348 -0.5 -2.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1679 -0.5 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1028 -0.5 -2.0 Transcriptional regulator, LysR family compare
PP_4879 -0.5 -1.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2653 -0.5 -2.0 Transcriptional regulator, Cro/CI family compare
PP_2322 -0.5 -3.6 Major outer membrane lipoprotein compare
PP_1362 -0.5 -1.5 pyruvate kinase II compare
PP_2070 -0.5 -1.5 Transcriptional regulator, AraC family compare
PP_4726 -0.5 -1.9 Chaperone protein DnaJ compare
PP_0362 -0.5 -3.8 Biotin synthase compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Cadaverine in Pseudomonas putida KT2440

For nitrogen source Cadaverine across organisms