Experiment set28IT031 for Pseudomonas putida KT2440

Compare to:

Cadaverine nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_1988 -5.7 -10.2 3-isopropylmalate dehydrogenase compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -5.6 -14.1 Histidinol dehydrogenase compare
PP_0691 -5.4 -7.4 Glutamate 5-kinase compare
PP_4724 -5.2 -13.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -5.2 -21.8 Carbamoyl-phosphate synthase large chain compare
PP_0290 -5.1 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -5.0 -19.1 Ketol-acid reductoisomerase compare
PP_4680 -4.9 -19.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.8 -14.9 Argininosuccinate synthase compare
PP_1985 -4.7 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_0082 -4.7 -5.6 tryptophan synthase alpha chain compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0967 -4.6 -14.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -4.6 -10.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.6 -9.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -4.5 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -4.4 -12.0 phosphoserine phosphatase compare
PP_0422 -4.3 -9.4 Indole-3-glycerol phosphate synthase compare
PP_4679 -4.2 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -4.1 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0420 -4.1 -13.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1079 -4.1 -6.2 Ornithine carbamoyltransferase compare
PP_0083 -4.0 -6.7 tryptophan synthase beta chain compare
PP_1986 -4.0 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_0421 -4.0 -9.0 Anthranilate phosphoribosyltransferase compare
PP_5098 -4.0 -11.5 methionine biosynthesis protein MetW compare
PP_0965 -4.0 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -3.9 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_2001 -3.9 -11.9 O-succinylhomoserine sulfhydrylase compare
PP_0417 -3.9 -19.3 Anthranilate synthase component 1 compare
PP_5015 -3.9 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -3.8 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5289 -3.7 -6.8 Acetylglutamate kinase compare
PP_0184 -3.7 -9.3 Argininosuccinate lyase compare
PP_5097 -3.6 -15.9 homoserine O-acetyltransferase compare
PP_0787 -3.6 -7.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5014 -3.5 -4.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_5128 -3.4 -8.2 Dihydroxy-acid dehydratase compare
PP_4890 -3.3 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_1109 -3.1 -14.1 Transcriptional regulator, GntR family compare
PP_1025 -2.9 -9.8 2-isopropylmalate synthase compare
PP_2168 -2.9 -12.6 Transaldolase compare
PP_5075 -2.9 -15.4 glutamate synthase (NADPH) beta subunit compare
PP_5278 -2.9 -5.9 4-guanidinobutyraldehyde dehydrogenase compare
PP_5179 -2.7 -11.1 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_2327 -2.7 -12.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -2.7 -3.6 serine acetyltransferase compare
PP_2371 -2.6 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5076 -2.6 -16.6 L-glutamate synthase(NADPH) alpha subunit compare
PP_5048 -2.5 -6.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_3999 -2.5 -5.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5181 -2.4 -14.7 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_1111 -2.4 -5.9 putative Synthetase compare
PP_5178 -2.4 -12.2 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_1231 -2.4 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2328 -2.4 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_2370 -2.4 -3.8 conserved protein of unknown function compare
PP_4058 -2.3 -14.1 1,4-alpha-glucan branching enzyme compare
PP_5177 -2.3 -8.9 spermidine/putrescine ABC transporter - permease subunit compare
PP_5047 -2.2 -9.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4696 -2.0 -6.0 Nitrogen regulation protein NR(I) compare
PP_0401 -2.0 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_4895 -1.9 -3.7 tRNA dimethylallyltransferase compare
PP_1216 -1.8 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2402 -1.8 -2.6 putative Sensor histidine kinase compare
PP_1912 -1.7 -5.5 Phosphate acyltransferase compare
PP_0291 -1.7 -2.3 conserved protein of unknown function compare
PP_0735 -1.7 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_0719 -1.7 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1589 -1.7 -8.6 uridylyltransferase compare
PP_4799 -1.6 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5303 -1.6 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2388 -1.5 -4.8 Transporter, LysE family compare
PP_0214 -1.5 -6.5 4-aminobutyrate aminotransferase compare
PP_3790 -1.4 -8.7 diaminopimelate epimerase compare
PP_0833 -1.4 -2.4 queuine tRNA-ribosyltransferase compare
PP_2180 -1.3 -7.6 polyamine:pyruvate transaminase compare
PP_2177 -1.2 -4.0 putative transcriptional regulator compare
PP_4937 -1.2 -1.5 toluene tolerance protein compare
PP_1233 -1.1 -4.0 sulfurtransferase compare
PP_1293 -1.1 -1.1 molybdopterin synthase small subunit compare
PP_0339 -1.1 -4.5 Pyruvate dehydrogenase E1 component compare
PP_4004 -1.1 -2.2 DNA translocase FtsK compare
PP_2390 -1.1 -5.3 Transcriptional regulator, LysR family compare
PP_5347 -1.0 -6.6 pyruvate carboxylase subunit A compare
PP_5104 -1.0 -6.4 thiazole synthase compare
PP_4782 -1.0 -4.5 Phosphomethylpyrimidine kinase compare
PP_4789 -1.0 -4.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4126 -1.0 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4910 -1.0 -1.6 conserved protein of unknown function compare
PP_4695 -1.0 -6.6 Sensory box histidine kinase compare
PP_3409 -0.9 -2.8 putative Cobalamin biosynthesis protein cobE compare
PP_2910 -0.9 -5.6 L-2-hydroxyglutarate oxidase compare
PP_5346 -0.9 -4.7 pyruvate carboxylase subunit B compare
PP_1664 -0.9 -2.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_2000 -0.9 -1.3 amidophosphoribosyl transferase compare
PP_3376 -0.9 -3.6 putative phosphonate dehydrogenase compare
PP_5183 -0.9 -2.9 glutamylpolyamine synthetase compare
PP_1366 -0.9 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1826 -0.8 -2.3 Hydrolase, isochorismatase family compare
PP_1426 -0.8 -7.0 L-aspartate oxidase compare
PP_5582 -0.8 -1.7 conserved protein of unknown function compare
PP_3551 -0.8 -1.1 DNA-binding response regulator, LuxR family compare
PP_1679 -0.8 -3.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1022 -0.8 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_2217 -0.8 -1.9 enoyl-CoA hydratase compare
PP_4892 -0.8 -3.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5182 -0.8 -3.0 polyamine:pyruvate transaminase compare
PP_2088 -0.8 -1.9 RNA polymerase sigma factor SigX compare
PP_4944 -0.8 -2.2 Carbamoyltransferase compare
PP_5348 -0.7 -4.6 Transcriptional regulator, LysR family compare
PP_5322 -0.7 -4.0 putative metal ion transporter compare
PP_5331 -0.7 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4247 -0.7 -1.6 Exonuclease compare
PP_2745 -0.7 -2.2 Universal stress protein family compare
PP_4726 -0.7 -2.8 Chaperone protein DnaJ compare
PP_1268 -0.7 -2.5 putative HtrA suppressor protein sohA compare
PP_4379 -0.7 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1215 -0.7 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1217 -0.7 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4008 -0.7 -3.5 ATP-dependent serine protease compare
PP_4480 -0.7 -4.3 arginine N-succinyltransferase, subunit alpha compare
PP_3833 -0.7 -2.9 Response regulator compare
PP_0345 -0.7 -2.2 putative Heptose kinase WapP compare
PP_5714 -0.7 -2.1 conserved protein of unknown function compare
PP_3789 -0.7 -3.7 putative Efflux transporter compare
PP_5350 -0.7 -2.0 Transcriptional regulator, RpiR family compare
PP_1493 -0.7 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1348 -0.7 -2.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0040 -0.6 -1.9 hypothetical protein compare
PP_t12 -0.6 -0.8 tRNA-Thr compare
PP_0919 -0.6 -2.3 conserved protein of unknown function compare
PP_5329 -0.6 -2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5575 -0.6 -1.3 conserved protein of unknown function compare
PP_1055 -0.6 -1.7 Type II secretion pathway protein GspN compare
PP_2389 -0.6 -2.7 conserved protein of unknown function compare
PP_5008 -0.6 -1.5 Poly granule-associated protein compare
PP_3757 -0.6 -1.5 Chemotaxis protein CheY compare
PP_1770 -0.6 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5227 -0.6 -3.7 diaminopimelate decarboxylase compare
PP_3776 -0.6 -3.9 putative permease (RarD protein) compare
PP_1214 -0.6 -1.7 putative transcriptional regulatory protein compare
PP_4159 -0.6 -0.9 Potassium-transporting ATPase C chain compare
PP_5114 -0.6 -0.8 putative adenine methyltransferase compare
PP_1654 -0.6 -1.6 cysteine synthase B compare
PP_3580 -0.6 -1.9 conserved protein of unknown function compare
PP_4212 -0.6 -3.1 pyoverdine biosynthesis related protein compare
PP_3590 -0.6 -3.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3408 -0.6 -2.1 cobalt transporter subunit A compare
PP_5090 -0.6 -0.7 putative cell division protein compare
PP_5471 -0.6 -1.1 putative response regulator receiver protein compare
PP_5552 -0.6 -1.8 conserved protein of unknown function compare
PP_2475 -0.6 -2.1 Transcriptional regulator, TetR family compare
PP_3245 -0.6 -1.2 conserved protein of unknown function compare
PP_3312 -0.6 -1.3 putative Heat shock protein compare
PP_5100 -0.6 -1.8 dITP/XTP pyrophosphatase compare
PP_1994 -0.6 -1.2 tRNA pseudouridine (38-40)synthase compare
PP_2429 -0.6 -1.0 putative Membrane protein compare
PP_2929 -0.6 -3.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2144 -0.6 -2.0 Transcriptional regulator, TetR family compare
PP_2378 -0.6 -0.8 Fe/S biogenesis protein NfuA compare
PP_2748 -0.6 -1.9 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_5327 -0.6 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_0362 -0.6 -4.2 Biotin synthase compare
PP_4258 -0.5 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_0832 -0.5 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1062 -0.5 -1.9 MutT/nudix family protein compare
PP_3380 -0.5 -2.0 2-ketogluconate utilization repressor compare
PP_0949 -0.5 -2.5 putative ATP-binding protein UPF0042 compare
PP_5204 -0.5 -1.8 conserved protein of unknown function compare
PP_5352 -0.5 -3.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1672 -0.5 -3.2 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5106 -0.5 -1.5 conserved inner membrane protein compare
PP_5533 -0.5 -1.0 conserved protein of unknown function compare
PP_4561 -0.5 -0.7 stress response protein compare
PP_1326 -0.5 -1.5 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2442 -0.5 -1.3 conserved protein of unknown function, DUF480 family compare
PP_4891 -0.5 -2.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1304 -0.5 -3.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1734 -0.5 -0.6 Probable septum site-determining protein MinC compare
PP_5180 -0.5 -1.9 spermidine/putrescine ABC transporter - periplasmic subunit compare
PP_1697 -0.5 -1.9 transcriptional regulator, GntR family compare
PP_5045 -0.5 -2.1 tRNA sulfurtransferase compare
PP_5701 -0.5 -0.7 conserved protein of unknown function compare
PP_5095 -0.5 -0.8 pyrroline-5-carboxylate reductase compare
PP_4426 -0.5 -2.0 Amino acid ABC transporter, permease protein compare
PP_4129 -0.5 -0.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2631 -0.5 -1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2148 -0.5 -3.8 transcription-repair coupling factor compare
PP_4880 -0.5 -2.7 exoribonuclease R compare
PP_1303 -0.5 -2.8 Sulfate adenylyltransferase subunit 2 compare
PP_5594 -0.5 -1.5 conserved protein of unknown function compare
PP_2070 -0.5 -1.2 Transcriptional regulator, AraC family compare
PP_4922 -0.5 -3.7 Phosphomethylpyrimidine synthase compare
PP_2181 -0.5 -2.1 Transcriptional regulator, Cro/CI family compare
PP_3563 -0.5 -1.5 conserved exported protein of unknown function compare
PP_3398 -0.5 -1.7 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4296 -0.5 -1.3 conserved exported protein of unknown function compare
PP_3241 -0.5 -1.1 conserved exported protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source Cadaverine in Pseudomonas putida KT2440

For nitrogen source Cadaverine across organisms