Experiment set28IT025 for Pseudomonas putida KT2440

Compare to:

3,5-Dinitrosalicylic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0691 -2.7 -4.9 Glutamate 5-kinase compare
PP_1898 -2.7 -5.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4004 -2.4 -2.3 DNA translocase FtsK compare
PP_0856 -2.3 -4.8 conserved lipoprotein of unknown function compare
PP_1999 -2.2 -1.8 membrane protein required for colicin V production compare
PP_4058 -2.2 -9.2 1,4-alpha-glucan branching enzyme compare
PP_2320 -2.1 -10.3 conserved exported protein of unknown function compare
PP_1186 -2.0 -4.6 two component system DNA-binding transcriptional dual regulator compare
PP_0959 -2.0 -2.7 phospholipid ABC transporter compare
PP_4799 -1.9 -1.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2322 -1.9 -9.4 Major outer membrane lipoprotein compare
PP_5095 -1.8 -2.0 pyrroline-5-carboxylate reductase compare
PP_4994 -1.8 -5.7 conserved protein of unknown function compare
PP_4940 -1.8 -7.4 Putative glycosyltransferase compare
PP_0719 -1.8 -1.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1994 -1.8 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_4874 -1.7 -1.1 50S ribosomal protein L9 compare
PP_0127 -1.7 -5.8 Thiol:disulfide interchange protein compare
PP_3821 -1.7 -8.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1206 -1.7 -6.8 basic-amino-acid specific porin OprD compare
PP_0063 -1.7 -4.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1111 -1.7 -4.6 putative Synthetase compare
PP_4910 -1.6 -2.1 conserved protein of unknown function compare
PP_2370 -1.6 -2.5 conserved protein of unknown function compare
PP_1385 -1.6 -13.5 Probable efflux pump membrane transporter TtgB compare
PP_1185 -1.6 -6.7 Outer membrane protein H1 compare
PP_1232 -1.6 -6.3 conserved exported protein of unknown function compare
PP_1386 -1.6 -11.2 Probable efflux pump periplasmic linker TtgA compare
PP_5652 -1.5 -1.6 conserved protein of unknown function, phage origin compare
PP_3946 -1.5 -1.5 HTH-type transcriptional repressor NicR compare
PP_1656 -1.5 -8.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1779 -1.5 -6.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1109 -1.4 -10.7 Transcriptional regulator, GntR family compare
PP_4999 -1.4 -2.1 dihydroorotase-like protein compare
PP_1384 -1.4 -8.8 Probable efflux pump outer membrane protein TtgC compare
PP_1802 -1.4 -9.8 glycosyl transferase compare
PP_1110 -1.4 -3.4 serine acetyltransferase compare
PP_4268 -1.4 -1.4 nucleoid-associated broad specificity regulator compare
PP_5552 -1.3 -1.6 conserved protein of unknown function compare
PP_4528 -1.3 -1.6 conserved protein of unknown function compare
PP_4938 -1.3 -6.6 putative Glycosyl transferase compare
PP_5393 -1.3 -1.0 putative metal-binding chaperone compare
PP_1293 -1.2 -1.4 molybdopterin synthase small subunit compare
PP_3829 -1.2 -2.8 Molybdenum transport system permease protein ModB compare
PP_4126 -1.2 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_3884 -1.2 -3.1 Phage holin, lambda family compare
PP_2820 -1.2 -3.9 HTH-type transcriptional regulator nfxB compare
PP_4008 -1.1 -3.6 ATP-dependent serine protease compare
PP_4723 -1.1 -9.0 Carbamoyl-phosphate synthase large chain compare
PP_0512 -1.1 -2.6 hypothetical protein compare
PP_3037 -1.1 -2.6 C4-type zinc finger protein, DksA/TraR family compare
PP_1801 -1.1 -5.8 Glycosyl transferase WbpY compare
PP_4895 -1.1 -2.7 tRNA dimethylallyltransferase compare
PP_2510 -1.1 -1.5 conserved protein of unknown function compare
PP_1776 -1.1 -8.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0319 -1.1 -2.0 conserved protein of unknown function compare
PP_4531 -1.1 -2.5 conserved exported protein of unknown function compare
PP_5338 -1.0 -1.0 aspartate ammonia-lyase compare
PP_0122 -1.0 -2.1 conserved exported protein of unknown function compare
PP_4724 -1.0 -5.1 Carbamoyl-phosphate synthase small chain compare
PP_1774 -1.0 -2.3 conserved exported protein of unknown function compare
PP_2323 -1.0 -5.2 conserved protein of unknown function compare
PP_3198 -1.0 -1.6 Ferredoxin, 2Fe-2S compare
PP_4890 -1.0 -3.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0401 -1.0 -1.4 Ribosomal RNA small subunit methyltransferase A compare
PP_0938 -1.0 -5.6 conserved protein of unknown function compare
PP_4936 -1.0 -3.2 O-antigen polymerase compare
PP_2299 -1.0 -2.6 Trigger factor compare
PP_1294 -1.0 -2.0 molybdopterin synthase large subunit compare
PP_1778 -0.9 -3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4482 -0.9 -2.5 Transcriptional regulator, AraC family compare
PP_4941 -0.9 -4.3 conserved exported protein of unknown function compare
PP_3185 -0.9 -3.4 Pet18 protein compare
PP_3892 -0.9 -1.6 conserved protein of unknown function compare
PP_1208 -0.9 -2.4 conserved protein of unknown function, SlyX family compare
PP_5204 -0.9 -2.3 conserved protein of unknown function compare
PP_4803 -0.9 -5.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1805 -0.9 -7.0 Polysaccharide biosynthesis protein compare
PP_1187 -0.9 -5.5 sensor protein compare
PP_1233 -0.9 -2.5 sulfurtransferase compare
PP_2773 -0.9 -1.4 conserved protein of unknown function compare
PP_3384 -0.9 -3.4 gluconate 2-dehydrogenase gamma subunit compare
PP_0958 -0.9 -3.7 phospholipid ABC transporter ATP-binding subunit compare
PP_1224 -0.9 -3.0 periplasmic subunit of the TolQRA transport system compare
PP_4159 -0.9 -1.4 Potassium-transporting ATPase C chain compare
PP_1568 -0.8 -1.1 conserved protein of unknown function compare
PP_4271 -0.8 -0.7 conserved protein of unknown function compare
PP_4696 -0.8 -2.8 Nitrogen regulation protein NR(I) compare
PP_0630 -0.8 -0.9 DNA gyrase inhibitor YacG compare
PP_4340 -0.8 -2.5 response regulator for chemotactic signal transduction compare
PP_1804 -0.8 -2.4 Glycosyl transferase WbpL compare
PP_2070 -0.8 -1.9 Transcriptional regulator, AraC family compare
PP_1780 -0.8 -7.0 putative mannosyltransferase compare
PP_5525 -0.8 -2.5 conserved exported protein of unknown function compare
PP_5610 -0.8 -1.3 protein of unknown function compare
PP_1214 -0.8 -1.3 putative transcriptional regulatory protein compare
PP_5487 -0.8 -2.0 conserved protein of unknown function compare
PP_0556 -0.8 -2.1 Acetoin catabolism protein compare
PP_1500 -0.8 -4.8 putative Lipoprotein compare
PP_3916 -0.8 -1.4 conserved protein of unknown function compare
PP_4338 -0.8 -4.0 Chemotaxis histidine kinase CheA compare
PP_3434 -0.8 -0.6 conserved protein of unknown function compare
PP_5528 -0.8 -1.7 conserved protein of unknown function compare
PP_1783 -0.7 -0.5 dTDP-glucose pyrophosphorylase compare
PP_4263 -0.7 -1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4505 -0.7 -3.6 Sensor histidine kinase compare
PP_0653 -0.7 -1.3 conserved protein of unknown function compare
PP_1654 -0.7 -1.5 cysteine synthase B compare
PP_5168 -0.7 -1.5 sulfate/thiosulfate import ATP-binding protein compare
PP_4392 -0.7 -3.7 chemotaxis protein methyltransferase compare
PP_1435 -0.7 -2.3 DNA repair protein RecO compare
PP_t57 -0.7 -2.7 tRNA-Arg compare
PP_0962 -0.7 -2.1 toluene-tolerance protein compare
PP_2340 -0.7 -2.0 conserved protein of unknown function compare
PP_1381 -0.7 -0.8 4-carboxymuconolactone decarboxylase compare
PP_1051 -0.7 -2.3 Type II secretion pathway protein XcpV compare
PP_0957 -0.7 -1.3 D-arabinose 5-phosphate isomerase compare
PP_5748 -0.7 -1.0 cytochrome c heme lyase subunit compare
PP_0989 -0.7 -1.2 glycine cleavage system H protein 1 compare
PP_5007 -0.7 -1.3 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1268 -0.7 -1.5 putative HtrA suppressor protein sohA compare
PP_4845 -0.7 -2.1 putative Urea ABC transporter, ATP-binding protein compare
PP_5612 -0.7 -2.5 protein of unknown function compare
PP_4609 -0.7 -3.1 conserved membrane protein of unknown function compare
PP_4642 -0.7 -0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_4060 -0.7 -5.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1697 -0.6 -1.8 transcriptional regulator, GntR family compare
PP_4050 -0.6 -4.7 glycogen synthase compare
PP_5609 -0.6 -1.7 conserved protein of unknown function compare
PP_1198 -0.6 -1.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0757 -0.6 -2.3 conserved protein of unknown function compare
PP_4260 -0.6 -2.7 conserved protein of unknown function compare
PP_1528 -0.6 -1.6 conserved protein of unknown function compare
PP_2950 -0.6 -1.9 conserved protein of unknown function compare
PP_3048 -0.6 -1.6 conserved protein of unknown function compare
PP_3580 -0.6 -1.5 conserved protein of unknown function compare
PP_4122 -0.6 -0.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4937 -0.6 -0.9 toluene tolerance protein compare
PP_4504 -0.6 -1.0 conserved exported protein of unknown function compare
PP_1153 -0.6 -1.3 putative lipoprotein compare
PP_3328 -0.6 -1.5 putative Ring-cleaving dioxygenase compare
PP_5217 -0.6 -5.4 Polyphosphate kinase compare
PP_1217 -0.6 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2677 -0.6 -1.4 conserved exported protein of unknown function compare
PP_3971 -0.6 -0.9 conserved protein of unknown function compare
PP_2416 -0.6 -1.2 putative Iron ABC transporter, ATP-binding protein compare
PP_1218 -0.6 -1.8 putative acyl-CoA thioesterase compare
PP_2253 -0.6 -0.7 Transcriptional regulator, GntR family compare
PP_0439 -0.6 -2.6 conserved protein of unknown function compare
PP_0007 -0.6 -1.3 conserved hypothetical protein compare
PP_1679 -0.6 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5279 -0.6 -1.5 conserved protein of unknown function compare
PP_2844 -0.6 -2.3 Urease subunit beta compare
PP_5674 -0.6 -1.3 conserved protein of unknown function compare
PP_3903 -0.6 -0.8 conserved protein of unknown function compare
PP_0685 -0.6 -1.6 conserved protein of unknown function compare
PP_4475 -0.6 -2.7 succinylglutamate desuccinylase compare
PP_2718 -0.6 -1.3 arsenic resistance transcriptional regulator compare
PP_0035 -0.6 -1.4 putative bactoprenol-linked glycose transferase compare
PP_3662 -0.6 -3.1 conserved protein of unknown function compare
PP_3473 -0.6 -1.9 curli secretion and assembly outer membrane associated component compare
PP_2976 -0.6 -1.2 putative transposase compare
PP_4449 -0.6 -1.5 conserved protein of unknown function compare
PP_4098 -0.6 -1.0 UvrABC system protein C compare
PP_4699 -0.6 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0524 -0.6 -2.4 putative Periplasmic cobalamin-binding protein HutB compare
PP_0677 -0.6 -1.6 putative Lipoprotein compare
PP_5047 -0.6 -2.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2306 -0.6 -1.0 conserved exported protein of unknown function compare
PP_0809 -0.5 -3.3 disulfide bond formation protein B compare
PP_1986 -0.5 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_3341 -0.5 -2.0 nickel-responsive regulator compare
PP_4362 -0.5 -1.4 conserved protein of unknown function compare
PP_5427 -0.5 -2.1 conserved exported protein of unknown function compare
PP_3757 -0.5 -1.3 Chemotaxis protein CheY compare
PP_3371 -0.5 -1.9 Sensor histidine kinase compare
PP_2779 -0.5 -2.7 putative Beta-ketoacyl synthase compare
PP_5248 -0.5 -0.8 putative hydrolase compare
PP_3800 -0.5 -2.7 conserved protein of unknown function compare
PP_2088 -0.5 -1.8 RNA polymerase sigma factor SigX compare
PP_0607 -0.5 -1.5 putative Type IV pili biogenesis protein FimT compare
PP_2907 -0.5 -1.5 DNA-binding response regulator compare
PP_0711 -0.5 -1.2 putative hydrolase compare
PP_4320 -0.5 -2.6 cytochrome c-type biogenesis protein compare
PP_3241 -0.5 -0.9 conserved exported protein of unknown function compare
PP_1326 -0.5 -1.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2511 -0.5 -1.4 conserved protein of unknown function compare
PP_3978 -0.5 -1.7 conserved protein of unknown function compare
PP_1820 -0.5 -2.0 Benzoate transport protein compare
PP_3024 -0.5 -1.9 conserved protein of unknown function compare
PP_5059 -0.5 -2.8 conserved exported protein of unknown function compare
PP_3693 -0.5 -1.3 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1038 -0.5 -1.1 conserved protein of unknown function compare
PP_1575 -0.5 -1.5 conserved protein of unknown function compare
PP_1800 -0.5 -3.3 Oxidoreductase Rmd compare
PP_3539 -0.5 -1.1 putative Transcriptional regulator compare
PP_1131 -0.5 -1.1 outer membrane lipoprotein compare
PP_2816 -0.5 -1.4 putative Transcriptional regulator NfxB compare
PP_2624 -0.5 -1.6 conserved protein of unknown function compare
PP_2402 -0.5 -1.1 putative Sensor histidine kinase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source 3,5-Dinitrosalicylic acid in Pseudomonas putida KT2440

For nitrogen source 3,5-Dinitrosalicylic acid across organisms